2MTAL

Crystal structure of a ternary electron transfer complex between methylamine dehydrogenase, amicyanin and a c-type cytochrome
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
Knots found
sequence length
125
structure length
124
Chain Sequence
TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords METHYLAMINE DEHYDROGENASE (HEAVY SUBUNIT)
publication title Structure of an electron transfer complex: methylamine dehydrogenase, amicyanin, and cytochrome c551i.
pubmed rcsb
source organism Paracoccus denitrificans
total genus 29
structure length 124
sequence length 125
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.1: Methylamine dehydrogenase (amicyanin).
pdb deposition date 1993-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2mtaL00
2AGXD 2AGLD 1MAFL 2IURD 2AGYD 2I0TD 3RN0C 2J55L 2J57K 3SVWC 2HJ4D 4K3IC 3SXTC 1MAEL 3C75L 2AH1D 2H3XB 2HXCD 3PXSC 3ORVC 2I0SD 2J56L 4FA1C 4FA4C 1MDAL 1MG2B 2BBKL 3L4OC 4Y5RC 3SJLC 2OK6D 2OIZD 4FA5C 2OJYD 4O1QC 2IUVD 3PXWC 3L4MC 3RMZC 1MG3B 3RLMC 4L3GC 2AGZD 2MADL 4L3HC 3RN1C 4FA9C 2I0RD 3SWSC 2GC7B 3SLEC 4FB1C 2IUPD 2IAAB 2GC4B 2HJBD 2HKRD 2IUQD 4FAVC 2OK4D 2HKMD 4L1QC 2H47B 2AH0D 2MTAL 2AGWD 3PXTC 2Q7QD 4FANC
chains in the Genus database with same CATH superfamily
2AGXD 2AGLD 1MAFL 2IURD 2AGYD 2I0TD 3RN0C 2J55L 2J57K 3SVWC 2HJ4D 4K3IC 3SXTC 1MAEL 3C75L 2AH1D 2H3XB 2HXCD 3PXSC 3ORVC 2I0SD 2J56L 4FA1C 4FA4C 1MDAL 1MG2B 2BBKL 3L4OC 4Y5RC 3SJLC 2OK6D 2OIZD 4FA5C 2OJYD 4O1QC 2IUVD 3PXWC 3L4MC 3RMZC 1MG3B 3RLMC 4L3GC 2AGZD 2MADL 4L3HC 3RN1C 4FA9C 2I0RD 3SWSC 2GC7B 3SLEC 4FB1C 2IUPD 2IAAB 2GC4B 2HJBD 2HKRD 2IUQD 4FAVC 2OK4D 2HKMD 4L1QC 2H47B 2AH0D 2MTAL 2AGWD 3PXTC 2Q7QD 4FANC
chains in the Genus database with same CATH topology
2AGXD 2AGLD 1MAFL 2IURD 2AGYD 2I0TD 3RN0C 2J55L 2J57K 3SVWC 2HJ4D 4K3IC 3SXTC 1MAEL 3C75L 2AH1D 2H3XB 2HXCD 3PXSC 3ORVC 2I0SD 2J56L 4FA1C 4FA4C 1MDAL 1MG2B 2BBKL 3L4OC 4Y5RC 3SJLC 2OK6D 2OIZD 4FA5C 2OJYD 4O1QC 2IUVD 3PXWC 3L4MC 3RMZC 1MG3B 3RLMC 4L3GC 2AGZD 2MADL 4L3HC 3RN1C 4FA9C 2I0RD 3SWSC 2GC7B 3SLEC 4FB1C 2IUPD 2IAAB 2GC4B 2HJBD 2HKRD 2IUQD 4FAVC 2OK4D 2HKMD 4L1QC 2H47B 2AH0D 2MTAL 2AGWD 3PXTC 2Q7QD 4FANC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGX D;  2AGL D;  1MAF L;  2IUR D;  2AGY D;  2I0T D;  3RN0 C;  2J55 L;  2J57 K;  3SVW C;  2HJ4 D;  4K3I C;  3SXT C;  1MAE L;  3C75 L;  2AH1 D;  2H3X B;  2HXC D;  3PXS C;  3ORV C;  2I0S D;  2J56 L;  4FA1 C;  4FA4 C;  1MDA L;  1MG2 B;  2BBK L;  3L4O C;  4Y5R C;  3SJL C;  2OK6 D;  2OIZ D;  4FA5 C;  2OJY D;  4O1Q C;  2IUV D;  3PXW C;  3L4M C;  3RMZ C;  1MG3 B;  3RLM C;  4L3G C;  2AGZ D;  2MAD L;  4L3H C;  3RN1 C;  4FA9 C;  2I0R D;  3SWS C;  2GC7 B;  3SLE C;  4FB1 C;  2IUP D;  2IAA B;  2GC4 B;  2HJB D;  2HKR D;  2IUQ D;  4FAV C;  2OK4 D;  2HKM D;  4L1Q C;  2H47 B;  2AH0 D;  2MTA L;  2AGW D;  3PXT C;  2Q7Q D;  4FAN C; 
#chains in the Genus database with same CATH topology
 2AGX D;  2AGL D;  1MAF L;  2IUR D;  2AGY D;  2I0T D;  3RN0 C;  2J55 L;  2J57 K;  3SVW C;  2HJ4 D;  4K3I C;  3SXT C;  1MAE L;  3C75 L;  2AH1 D;  2H3X B;  2HXC D;  3PXS C;  3ORV C;  2I0S D;  2J56 L;  4FA1 C;  4FA4 C;  1MDA L;  1MG2 B;  2BBK L;  3L4O C;  4Y5R C;  3SJL C;  2OK6 D;  2OIZ D;  4FA5 C;  2OJY D;  4O1Q C;  2IUV D;  3PXW C;  3L4M C;  3RMZ C;  1MG3 B;  3RLM C;  4L3G C;  2AGZ D;  2MAD L;  4L3H C;  3RN1 C;  4FA9 C;  2I0R D;  3SWS C;  2GC7 B;  3SLE C;  4FB1 C;  2IUP D;  2IAA B;  2GC4 B;  2HJB D;  2HKR D;  2IUQ D;  4FAV C;  2OK4 D;  2HKM D;  4L1Q C;  2H47 B;  2AH0 D;  2MTA L;  2AGW D;  3PXT C;  2Q7Q D;  4FAN C; 
#chains in the Genus database with same CATH homology
 2AGX D;  2AGL D;  1MAF L;  2IUR D;  2AGY D;  2I0T D;  3RN0 C;  2J55 L;  2J57 K;  3SVW C;  2HJ4 D;  4K3I C;  3SXT C;  1MAE L;  3C75 L;  2AH1 D;  2H3X B;  2HXC D;  3PXS C;  3ORV C;  2I0S D;  2J56 L;  4FA1 C;  4FA4 C;  1MDA L;  1MG2 B;  2BBK L;  3L4O C;  4Y5R C;  3SJL C;  2OK6 D;  2OIZ D;  4FA5 C;  2OJY D;  4O1Q C;  2IUV D;  3PXW C;  3L4M C;  3RMZ C;  1MG3 B;  3RLM C;  4L3G C;  2AGZ D;  2MAD L;  4L3H C;  3RN1 C;  4FA9 C;  2I0R D;  3SWS C;  2GC7 B;  3SLE C;  4FB1 C;  2IUP D;  2IAA B;  2GC4 B;  2HJB D;  2HKR D;  2IUQ D;  4FAV C;  2OK4 D;  2HKM D;  4L1Q C;  2H47 B;  2AH0 D;  2MTA L;  2AGW D;  3PXT C;  2Q7Q D;  4FAN C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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