2Q7QD

Crystal structure of alcaligenes faecalis aadh in complex with p-chlorobenzylamine.
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
Knots found
sequence length
109
structure length
108
Chain Sequence
EVNSCDYWRHCAVDGFLCSCCGGTTTTCPPGSTPSPISIGTCHNPHDGKDYLISYHDCCGKTACGRCQCNTQTRERPGYEFFLHNDVNWCMANENSTFHCTTSVLVGL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Aralkylamine dehydrogenase light chain
publication title Isotope effects reveal that para-substituted benzylamines are poor reactivity probes of the quinoprotein mechanism for aromatic amine dehydrogenase.
pubmed doi rcsb
source organism Alcaligenes faecalis
total genus 24
structure length 108
sequence length 109
chains with identical sequence H
other databases KnotProt 2.0: K
ec nomenclature ec 1.4.9.2: Aralkylamine dehydrogenase (azurin).
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02975 Me-amine-dh_L Methylamine dehydrogenase, L chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.30.10 Mainly Beta Sandwich Electron Transport Ethylamine Dehydrogenase Methylamine/Aralkylamine dehydrogenase light chain 2q7qD00
2AGXD 2HJBD 2HKMD 2HJ4D 2IAAB 2AH0D 4Y5RC 2J56L 3C75L 3RMZC 3SVWC 2I0TD 4FA4C 2H3XB 2J57K 1MAFL 2AGYD 3SWSC 2IUQD 3PXWC 4L1QC 3SLEC 2OIZD 4L3HC 2I0RD 4FA9C 3L4OC 2I0SD 2IUPD 2OK4D 4FAVC 1MG2B 2IUVD 2GC4B 3PXSC 3RN1C 2AGZD 2H47B 2OJYD 2GC7B 3SXTC 3L4MC 4L3GC 2AGLD 1MAEL 2MTAL 1MG3B 3RLMC 2AH1D 4FANC 4FB1C 2HXCD 3ORVC 1MDAL 4FA1C 2OK6D 3RN0C 3PXTC 2J55L 3SJLC 2IURD 2MADL 4FA5C 4K3IC 2AGWD 2Q7QD 2HKRD 2BBKL 4O1QC
chains in the Genus database with same CATH superfamily
2AGXD 2HJBD 2HKMD 2HJ4D 2IAAB 2AH0D 4Y5RC 2J56L 3C75L 3RMZC 3SVWC 2I0TD 4FA4C 2H3XB 2J57K 1MAFL 2AGYD 3SWSC 2IUQD 3PXWC 4L1QC 3SLEC 2OIZD 4L3HC 2I0RD 4FA9C 3L4OC 2I0SD 2IUPD 2OK4D 4FAVC 1MG2B 2IUVD 2GC4B 3PXSC 3RN1C 2AGZD 2H47B 2OJYD 2GC7B 3SXTC 3L4MC 4L3GC 2AGLD 1MAEL 2MTAL 1MG3B 3RLMC 2AH1D 4FANC 4FB1C 2HXCD 3ORVC 1MDAL 4FA1C 2OK6D 3RN0C 3PXTC 2J55L 3SJLC 2IURD 2MADL 4FA5C 4K3IC 2AGWD 2Q7QD 2HKRD 2BBKL 4O1QC
chains in the Genus database with same CATH topology
2AGXD 2HJBD 2HKMD 2HJ4D 2IAAB 2AH0D 4Y5RC 2J56L 3C75L 3RMZC 3SVWC 2I0TD 4FA4C 2H3XB 2J57K 1MAFL 2AGYD 3SWSC 2IUQD 3PXWC 4L1QC 3SLEC 2OIZD 4L3HC 2I0RD 4FA9C 3L4OC 2I0SD 2IUPD 2OK4D 4FAVC 1MG2B 2IUVD 2GC4B 3PXSC 3RN1C 2AGZD 2H47B 2OJYD 2GC7B 3SXTC 3L4MC 4L3GC 2AGLD 1MAEL 2MTAL 1MG3B 3RLMC 2AH1D 4FANC 4FB1C 2HXCD 3ORVC 1MDAL 4FA1C 2OK6D 3RN0C 3PXTC 2J55L 3SJLC 2IURD 2MADL 4FA5C 4K3IC 2AGWD 2Q7QD 2HKRD 2BBKL 4O1QC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AGX D;  2HJB D;  2HKM D;  2HJ4 D;  2IAA B;  2AH0 D;  4Y5R C;  2J56 L;  3C75 L;  3RMZ C;  3SVW C;  2I0T D;  4FA4 C;  2H3X B;  2J57 K;  1MAF L;  2AGY D;  3SWS C;  2IUQ D;  3PXW C;  4L1Q C;  3SLE C;  2OIZ D;  4L3H C;  2I0R D;  4FA9 C;  3L4O C;  2I0S D;  2IUP D;  2OK4 D;  4FAV C;  1MG2 B;  2IUV D;  2GC4 B;  3PXS C;  3RN1 C;  2AGZ D;  2H47 B;  2OJY D;  2GC7 B;  3SXT C;  3L4M C;  4L3G C;  2AGL D;  1MAE L;  2MTA L;  1MG3 B;  3RLM C;  2AH1 D;  4FAN C;  4FB1 C;  2HXC D;  3ORV C;  1MDA L;  4FA1 C;  2OK6 D;  3RN0 C;  3PXT C;  2J55 L;  3SJL C;  2IUR D;  2MAD L;  4FA5 C;  4K3I C;  2AGW D;  2Q7Q D;  2HKR D;  2BBK L;  4O1Q C; 
#chains in the Genus database with same CATH topology
 2AGX D;  2HJB D;  2HKM D;  2HJ4 D;  2IAA B;  2AH0 D;  4Y5R C;  2J56 L;  3C75 L;  3RMZ C;  3SVW C;  2I0T D;  4FA4 C;  2H3X B;  2J57 K;  1MAF L;  2AGY D;  3SWS C;  2IUQ D;  3PXW C;  4L1Q C;  3SLE C;  2OIZ D;  4L3H C;  2I0R D;  4FA9 C;  3L4O C;  2I0S D;  2IUP D;  2OK4 D;  4FAV C;  1MG2 B;  2IUV D;  2GC4 B;  3PXS C;  3RN1 C;  2AGZ D;  2H47 B;  2OJY D;  2GC7 B;  3SXT C;  3L4M C;  4L3G C;  2AGL D;  1MAE L;  2MTA L;  1MG3 B;  3RLM C;  2AH1 D;  4FAN C;  4FB1 C;  2HXC D;  3ORV C;  1MDA L;  4FA1 C;  2OK6 D;  3RN0 C;  3PXT C;  2J55 L;  3SJL C;  2IUR D;  2MAD L;  4FA5 C;  4K3I C;  2AGW D;  2Q7Q D;  2HKR D;  2BBK L;  4O1Q C; 
#chains in the Genus database with same CATH homology
 2AGX D;  2HJB D;  2HKM D;  2HJ4 D;  2IAA B;  2AH0 D;  4Y5R C;  2J56 L;  3C75 L;  3RMZ C;  3SVW C;  2I0T D;  4FA4 C;  2H3X B;  2J57 K;  1MAF L;  2AGY D;  3SWS C;  2IUQ D;  3PXW C;  4L1Q C;  3SLE C;  2OIZ D;  4L3H C;  2I0R D;  4FA9 C;  3L4O C;  2I0S D;  2IUP D;  2OK4 D;  4FAV C;  1MG2 B;  2IUV D;  2GC4 B;  3PXS C;  3RN1 C;  2AGZ D;  2H47 B;  2OJY D;  2GC7 B;  3SXT C;  3L4M C;  4L3G C;  2AGL D;  1MAE L;  2MTA L;  1MG3 B;  3RLM C;  2AH1 D;  4FAN C;  4FB1 C;  2HXC D;  3ORV C;  1MDA L;  4FA1 C;  2OK6 D;  3RN0 C;  3PXT C;  2J55 L;  3SJL C;  2IUR D;  2MAD L;  4FA5 C;  4K3I C;  2AGW D;  2Q7Q D;  2HKR D;  2BBK L;  4O1Q C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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