2W5SA

Structure-based mechanism of lipoteichoic acid synthesis by staphylococcus aureus ltas.
Total Genus 163
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
163
Knots found
sequence length
424
structure length
424
Chain Sequence
SEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROCESSED GLYCEROL PHOSPHATE LIPOTEICHOIC ACID SYNTHASE
publication title Structure-Based Mechanism of Lipoteichoic Acid Synthesis by Staphylococcus Aureus Ltas.
pubmed doi rcsb
source organism Staphylococcus aureus
total genus 163
structure length 424
sequence length 424
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2008-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2w5sA02
3NKRA 2XR9A 3BDGB 3ED4A 1ZEBA 1ELXA 4TN0A 1AJBA 5C66A 2X98A 1SHNA 4KAYA 4ZG6A 2IUCB 4LREA 3UO0A 1N2KA 3T02A 4LRDA 1KHNA 5DLTA 1AJAA 5KXAA 3E2DA 2GSUA 2W5VA 1E1ZP 3T00A 3NKQA 4LR8A 1ALJA 5L0EA 3SZYA 3B5QA 2GSNA 5L0KA 4ZGAA 2G9YA 4UPHA 3TWZA 1O98A 1Y6VA 2W8DA 2ZKTA 2GSOA 3KD8A 1KHLA 1ELZA 4NWJA 2W5RA 4GTZA 3NVLA 3Q3QA 3BDGA 3BDFA 3WAVA 3IGZB 4LR2A 4FDJA 4N7TA 4MIVA 1P49A 1EW2A 3IDDA 3UNYA 3TX0A 2ANHA 4KJDA 1KH9A 2VQRA 5DLWA 1EI6A 5EGHA 5HRTA 1HQAA 2W5XA 4LRBA 1ALIA 1URBA 4KAVA 3SZZA 2GA3A 1E33P 1ALKA 3DPCA 3NKOA 4MHXA 2QZUA 4LR7A 1ALHA 1EW8A 1KHJA 4QAXA 2W5SA 3UN2A 3NKMA 1Y7AA 4GTWA 1ED8A 4UPIA 4UOPA 4CYRA 3M7VA 1ANIA 1URAA 5K4PA 3M8YA 4ZG7A 5GRRA 2W5WA 1N2LA 5IJQA 5AJ9A 1KH7A 3NKPA 5INHA 5LRMA 4UPLA 4GTXA 4GTYA 1O99A 4LRFA 4NWXA 5LRNA 1HDHA 3WAWA 3CMRA 1B8JA 3DYCA 5TJ3A 1E2SP 3TG0A 1ED9A 2IUCA 1SHQA 3WBHA 4UORA 1AJDA 1EQJA 1ANJA 3MK2A 3IGYB 3OT9A 1KHKA 3A52A 1ZEDA 1ELYA 5IJSA 2IFYA 1E3CP 4UPKA 4UOOA 4CXSA 5DLVA 4B56A 1AUKA 1ZEFA 1EJJA 3WAXA 1K7HA 3BDHA 3WAYA 2GLQA 1EW9A 2D1GA 2XRGA 5EGEA 4LRCA 2W5QA 4LQYA 1KH4A 4CXUA 3T01A 4CYSA 5LIAA 3MK0A 4LR9A 4CXKA 4KJGA 4LRAA 5L0BA 2W5TA 5GOVA 1KH5A 3UN3A 3NKNA 4KM4A 4ZG9A 1HJKA 4FDIA 3MK1A 3UN5A 3M8ZA 2RH6A 1FSUA 3LXQA 5LQQA 1AJCA 3M8WA 2W8SA 4MY4A 4YR1A
chains in the Genus database with same CATH superfamily
3NKRA 2XR9A 3BDGB 3ED4A 1ZEBA 1ELXA 4TN0A 1AJBA 5C66A 2X98A 1SHNA 4KAYA 4ZG6A 2IUCB 4LREA 3UO0A 1N2KA 3T02A 4LRDA 1KHNA 5DLTA 1AJAA 5KXAA 3E2DA 2GSUA 2W5VA 1E1ZP 3T00A 3NKQA 4LR8A 1ALJA 5L0EA 3SZYA 3B5QA 2GSNA 5L0KA 4ZGAA 2G9YA 4UPHA 3TWZA 1O98A 1Y6VA 2W8DA 2ZKTA 2GSOA 3KD8A 1KHLA 1ELZA 4NWJA 2W5RA 4GTZA 3NVLA 3Q3QA 3BDGA 3BDFA 3WAVA 3IGZB 4LR2A 4FDJA 4N7TA 4MIVA 1P49A 1EW2A 3IDDA 3UNYA 3TX0A 2ANHA 4KJDA 1KH9A 2VQRA 5DLWA 1EI6A 5EGHA 5HRTA 1HQAA 2W5XA 4LRBA 1ALIA 1URBA 4KAVA 3SZZA 2GA3A 1E33P 1ALKA 3DPCA 3NKOA 4MHXA 2QZUA 4LR7A 1ALHA 1EW8A 1KHJA 4QAXA 2W5SA 3UN2A 3NKMA 1Y7AA 4GTWA 1ED8A 4UPIA 4UOPA 4CYRA 3M7VA 1ANIA 1URAA 5K4PA 3M8YA 4ZG7A 5GRRA 2W5WA 1N2LA 5IJQA 5AJ9A 1KH7A 3NKPA 5INHA 5LRMA 4UPLA 4GTXA 4GTYA 1O99A 4LRFA 4NWXA 5LRNA 1HDHA 3WAWA 3CMRA 1B8JA 3DYCA 5TJ3A 1E2SP 3TG0A 1ED9A 2IUCA 1SHQA 3WBHA 4UORA 1AJDA 1EQJA 1ANJA 3MK2A 3IGYB 3OT9A 1KHKA 3A52A 1ZEDA 1ELYA 5IJSA 2IFYA 1E3CP 4UPKA 4UOOA 4CXSA 5DLVA 4B56A 1AUKA 1ZEFA 1EJJA 3WAXA 1K7HA 3BDHA 3WAYA 2GLQA 1EW9A 2D1GA 2XRGA 5EGEA 4LRCA 2W5QA 4LQYA 1KH4A 4CXUA 3T01A 4CYSA 5LIAA 3MK0A 4LR9A 4CXKA 4KJGA 4LRAA 5L0BA 2W5TA 5GOVA 1KH5A 3UN3A 3NKNA 4KM4A 4ZG9A 1HJKA 4FDIA 3MK1A 3UN5A 3M8ZA 2RH6A 1FSUA 3LXQA 5LQQA 1AJCA 3M8WA 2W8SA 4MY4A 4YR1A
chains in the Genus database with same CATH topology
3NKRA 2XR9A 3BDGB 3ED4A 1ZEBA 1ELXA 4TN0A 1AJBA 5C66A 2X98A 1SHNA 4KAYA 4ZG6A 2IUCB 4LREA 3UO0A 1N2KA 3T02A 4LRDA 1KHNA 5DLTA 1AJAA 5KXAA 3E2DA 2GSUA 2W5VA 1E1ZP 3T00A 3NKQA 4LR8A 1ALJA 5L0EA 3SZYA 3B5QA 2GSNA 5L0KA 4ZGAA 2G9YA 4UPHA 3TWZA 1O98A 1Y6VA 2W8DA 2ZKTA 2GSOA 3KD8A 1KHLA 1ELZA 4NWJA 2W5RA 4GTZA 3NVLA 3Q3QA 3BDGA 3BDFA 3WAVA 3IGZB 4LR2A 4FDJA 4N7TA 4MIVA 1P49A 1EW2A 3IDDA 3UNYA 3TX0A 2ANHA 4KJDA 1KH9A 2VQRA 5DLWA 1EI6A 5EGHA 5HRTA 1HQAA 2W5XA 4LRBA 1ALIA 1URBA 4KAVA 3SZZA 2GA3A 1E33P 1ALKA 3DPCA 3NKOA 4MHXA 2QZUA 4LR7A 1ALHA 1EW8A 1KHJA 4QAXA 2W5SA 3UN2A 3NKMA 1Y7AA 4GTWA 1ED8A 4UPIA 4UOPA 4CYRA 3M7VA 1ANIA 1URAA 5K4PA 3M8YA 4ZG7A 5GRRA 2W5WA 1N2LA 5IJQA 5AJ9A 1KH7A 3NKPA 5INHA 5LRMA 4UPLA 4GTXA 4GTYA 1O99A 4LRFA 4NWXA 5LRNA 1HDHA 3WAWA 3CMRA 1B8JA 3DYCA 5TJ3A 1E2SP 3TG0A 1ED9A 2IUCA 1SHQA 3WBHA 4UORA 1AJDA 1EQJA 1ANJA 3MK2A 3IGYB 3OT9A 1KHKA 3A52A 1ZEDA 1ELYA 5IJSA 2IFYA 1E3CP 4UPKA 4UOOA 4CXSA 5DLVA 4B56A 1AUKA 1ZEFA 1EJJA 3WAXA 1K7HA 3BDHA 3WAYA 2GLQA 1EW9A 2D1GA 2XRGA 5EGEA 4LRCA 2W5QA 4LQYA 1KH4A 4CXUA 3T01A 4CYSA 5LIAA 3MK0A 4LR9A 4CXKA 4KJGA 4LRAA 5L0BA 2W5TA 5GOVA 1KH5A 3UN3A 3NKNA 4KM4A 4ZG9A 1HJKA 4FDIA 3MK1A 3UN5A 3M8ZA 2RH6A 1FSUA 3LXQA 5LQQA 1AJCA 3M8WA 2W8SA 4MY4A 4YR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NKR A;  2XR9 A;  3BDG B;  3ED4 A;  1ZEB A;  1ELX A;  4TN0 A;  1AJB A;  5C66 A;  2X98 A;  1SHN A;  4KAY A;  4ZG6 A;  2IUC B;  4LRE A;  3UO0 A;  1N2K A;  3T02 A;  4LRD A;  1KHN A;  5DLT A;  1AJA A;  5KXA A;  3E2D A;  2GSU A;  2W5V A;  1E1Z P;  3T00 A;  3NKQ A;  4LR8 A;  1ALJ A;  5L0E A;  3SZY A;  3B5Q A;  2GSN A;  5L0K A;  4ZGA A;  2G9Y A;  4UPH A;  3TWZ A;  1O98 A;  1Y6V A;  2W8D A;  2ZKT A;  2GSO A;  3KD8 A;  1KHL A;  1ELZ A;  4NWJ A;  2W5R A;  4GTZ A;  3NVL A;  3Q3Q A;  3BDG A;  3BDF A;  3WAV A;  3IGZ B;  4LR2 A;  4FDJ A;  4N7T A;  4MIV A;  1P49 A;  1EW2 A;  3IDD A;  3UNY A;  3TX0 A;  2ANH A;  4KJD A;  1KH9 A;  2VQR A;  5DLW A;  1EI6 A;  5EGH A;  5HRT A;  1HQA A;  2W5X A;  4LRB A;  1ALI A;  1URB A;  4KAV A;  3SZZ A;  2GA3 A;  1E33 P;  1ALK A;  3DPC A;  3NKO A;  4MHX A;  2QZU A;  4LR7 A;  1ALH A;  1EW8 A;  1KHJ A;  4QAX A;  2W5S A;  3UN2 A;  3NKM A;  1Y7A A;  4GTW A;  1ED8 A;  4UPI A;  4UOP A;  4CYR A;  3M7V A;  1ANI A;  1URA A;  5K4P A;  3M8Y A;  4ZG7 A;  5GRR A;  2W5W A;  1N2L A;  5IJQ A;  5AJ9 A;  1KH7 A;  3NKP A;  5INH A;  5LRM A;  4UPL A;  4GTX A;  4GTY A;  1O99 A;  4LRF A;  4NWX A;  5LRN A;  1HDH A;  3WAW A;  3CMR A;  1B8J A;  3DYC A;  5TJ3 A;  1E2S P;  3TG0 A;  1ED9 A;  2IUC A;  1SHQ A;  3WBH A;  4UOR A;  1AJD A;  1EQJ A;  1ANJ A;  3MK2 A;  3IGY B;  3OT9 A;  1KHK A;  3A52 A;  1ZED A;  1ELY A;  5IJS A;  2IFY A;  1E3C P;  4UPK A;  4UOO A;  4CXS A;  5DLV A;  4B56 A;  1AUK A;  1ZEF A;  1EJJ A;  3WAX A;  1K7H A;  3BDH A;  3WAY A;  2GLQ A;  1EW9 A;  2D1G A;  2XRG A;  5EGE A;  4LRC A;  2W5Q A;  4LQY A;  1KH4 A;  4CXU A;  3T01 A;  4CYS A;  5LIA A;  3MK0 A;  4LR9 A;  4CXK A;  4KJG A;  4LRA A;  5L0B A;  2W5T A;  5GOV A;  1KH5 A;  3UN3 A;  3NKN A;  4KM4 A;  4ZG9 A;  1HJK A;  4FDI A;  3MK1 A;  3UN5 A;  3M8Z A;  2RH6 A;  1FSU A;  3LXQ A;  5LQQ A;  1AJC A;  3M8W A;  2W8S A;  4MY4 A;  4YR1 A; 
#chains in the Genus database with same CATH topology
 3NKR A;  2XR9 A;  3BDG B;  3ED4 A;  1ZEB A;  1ELX A;  4TN0 A;  1AJB A;  5C66 A;  2X98 A;  1SHN A;  4KAY A;  4ZG6 A;  2IUC B;  4LRE A;  3UO0 A;  1N2K A;  3T02 A;  4LRD A;  1KHN A;  5DLT A;  1AJA A;  5KXA A;  3E2D A;  2GSU A;  2W5V A;  1E1Z P;  3T00 A;  3NKQ A;  4LR8 A;  1ALJ A;  5L0E A;  3SZY A;  3B5Q A;  2GSN A;  5L0K A;  4ZGA A;  2G9Y A;  4UPH A;  3TWZ A;  1O98 A;  1Y6V A;  2W8D A;  2ZKT A;  2GSO A;  3KD8 A;  1KHL A;  1ELZ A;  4NWJ A;  2W5R A;  4GTZ A;  3NVL A;  3Q3Q A;  3BDG A;  3BDF A;  3WAV A;  3IGZ B;  4LR2 A;  4FDJ A;  4N7T A;  4MIV A;  1P49 A;  1EW2 A;  3IDD A;  3UNY A;  3TX0 A;  2ANH A;  4KJD A;  1KH9 A;  2VQR A;  5DLW A;  1EI6 A;  5EGH A;  5HRT A;  1HQA A;  2W5X A;  4LRB A;  1ALI A;  1URB A;  4KAV A;  3SZZ A;  2GA3 A;  1E33 P;  1ALK A;  3DPC A;  3NKO A;  4MHX A;  2QZU A;  4LR7 A;  1ALH A;  1EW8 A;  1KHJ A;  4QAX A;  2W5S A;  3UN2 A;  3NKM A;  1Y7A A;  4GTW A;  1ED8 A;  4UPI A;  4UOP A;  4CYR A;  3M7V A;  1ANI A;  1URA A;  5K4P A;  3M8Y A;  4ZG7 A;  5GRR A;  2W5W A;  1N2L A;  5IJQ A;  5AJ9 A;  1KH7 A;  3NKP A;  5INH A;  5LRM A;  4UPL A;  4GTX A;  4GTY A;  1O99 A;  4LRF A;  4NWX A;  5LRN A;  1HDH A;  3WAW A;  3CMR A;  1B8J A;  3DYC A;  5TJ3 A;  1E2S P;  3TG0 A;  1ED9 A;  2IUC A;  1SHQ A;  3WBH A;  4UOR A;  1AJD A;  1EQJ A;  1ANJ A;  3MK2 A;  3IGY B;  3OT9 A;  1KHK A;  3A52 A;  1ZED A;  1ELY A;  5IJS A;  2IFY A;  1E3C P;  4UPK A;  4UOO A;  4CXS A;  5DLV A;  4B56 A;  1AUK A;  1ZEF A;  1EJJ A;  3WAX A;  1K7H A;  3BDH A;  3WAY A;  2GLQ A;  1EW9 A;  2D1G A;  2XRG A;  5EGE A;  4LRC A;  2W5Q A;  4LQY A;  1KH4 A;  4CXU A;  3T01 A;  4CYS A;  5LIA A;  3MK0 A;  4LR9 A;  4CXK A;  4KJG A;  4LRA A;  5L0B A;  2W5T A;  5GOV A;  1KH5 A;  3UN3 A;  3NKN A;  4KM4 A;  4ZG9 A;  1HJK A;  4FDI A;  3MK1 A;  3UN5 A;  3M8Z A;  2RH6 A;  1FSU A;  3LXQ A;  5LQQ A;  1AJC A;  3M8W A;  2W8S A;  4MY4 A;  4YR1 A; 
#chains in the Genus database with same CATH homology
 3NKR A;  2XR9 A;  3BDG B;  3ED4 A;  1ZEB A;  1ELX A;  4TN0 A;  1AJB A;  5C66 A;  2X98 A;  1SHN A;  4KAY A;  4ZG6 A;  2IUC B;  4LRE A;  3UO0 A;  1N2K A;  3T02 A;  4LRD A;  1KHN A;  5DLT A;  1AJA A;  5KXA A;  3E2D A;  2GSU A;  2W5V A;  1E1Z P;  3T00 A;  3NKQ A;  4LR8 A;  1ALJ A;  5L0E A;  3SZY A;  3B5Q A;  2GSN A;  5L0K A;  4ZGA A;  2G9Y A;  4UPH A;  3TWZ A;  1O98 A;  1Y6V A;  2W8D A;  2ZKT A;  2GSO A;  3KD8 A;  1KHL A;  1ELZ A;  4NWJ A;  2W5R A;  4GTZ A;  3NVL A;  3Q3Q A;  3BDG A;  3BDF A;  3WAV A;  3IGZ B;  4LR2 A;  4FDJ A;  4N7T A;  4MIV A;  1P49 A;  1EW2 A;  3IDD A;  3UNY A;  3TX0 A;  2ANH A;  4KJD A;  1KH9 A;  2VQR A;  5DLW A;  1EI6 A;  5EGH A;  5HRT A;  1HQA A;  2W5X A;  4LRB A;  1ALI A;  1URB A;  4KAV A;  3SZZ A;  2GA3 A;  1E33 P;  1ALK A;  3DPC A;  3NKO A;  4MHX A;  2QZU A;  4LR7 A;  1ALH A;  1EW8 A;  1KHJ A;  4QAX A;  2W5S A;  3UN2 A;  3NKM A;  1Y7A A;  4GTW A;  1ED8 A;  4UPI A;  4UOP A;  4CYR A;  3M7V A;  1ANI A;  1URA A;  5K4P A;  3M8Y A;  4ZG7 A;  5GRR A;  2W5W A;  1N2L A;  5IJQ A;  5AJ9 A;  1KH7 A;  3NKP A;  5INH A;  5LRM A;  4UPL A;  4GTX A;  4GTY A;  1O99 A;  4LRF A;  4NWX A;  5LRN A;  1HDH A;  3WAW A;  3CMR A;  1B8J A;  3DYC A;  5TJ3 A;  1E2S P;  3TG0 A;  1ED9 A;  2IUC A;  1SHQ A;  3WBH A;  4UOR A;  1AJD A;  1EQJ A;  1ANJ A;  3MK2 A;  3IGY B;  3OT9 A;  1KHK A;  3A52 A;  1ZED A;  1ELY A;  5IJS A;  2IFY A;  1E3C P;  4UPK A;  4UOO A;  4CXS A;  5DLV A;  4B56 A;  1AUK A;  1ZEF A;  1EJJ A;  3WAX A;  1K7H A;  3BDH A;  3WAY A;  2GLQ A;  1EW9 A;  2D1G A;  2XRG A;  5EGE A;  4LRC A;  2W5Q A;  4LQY A;  1KH4 A;  4CXU A;  3T01 A;  4CYS A;  5LIA A;  3MK0 A;  4LR9 A;  4CXK A;  4KJG A;  4LRA A;  5L0B A;  2W5T A;  5GOV A;  1KH5 A;  3UN3 A;  3NKN A;  4KM4 A;  4ZG9 A;  1HJK A;  4FDI A;  3MK1 A;  3UN5 A;  3M8Z A;  2RH6 A;  1FSU A;  3LXQ A;  5LQQ A;  1AJC A;  3M8W A;  2W8S A;  4MY4 A;  4YR1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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