3BDGA

Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
Knots found
sequence length
448
structure length
434
Chain Sequence
PEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDAVPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
source organism Escherichia coli
total genus 159
structure length 434
sequence length 448
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdgA00
1E33P 3IDDA 1KHJA 2ANHA 1HDHA 1E1ZP 4NWXA 2VQRA 1EQJA 1KH9A 2QZUA 5GOVA 5INHA 4LRCA 3LXQA 3SZZA 4LRDA 2RH6A 4LR8A 4LRAA 1B8JA 5AJ9A 1ELZA 2GSNA 1O98A 3WAXA 3BDGB 3TWZA 2IUCA 5KXAA 1ED9A 2W8DA 4FDIA 4ZG6A 1SHNA 4UORA 4CXKA 1URBA 4UPHA 1ED8A 5L0BA 4GTWA 5DLWA 1ELYA 1Y6VA 2D1GA 1KHNA 2ZKTA 1ZEDA 4GTYA 5DLVA 3BDHA 4YR1A 3WAWA 5EGHA 1O99A 3SZYA 3TG0A 3E2DA 4MY4A 2W5QA 4LQYA 4LRFA 3NKRA 2GSUA 3KD8A 2XRGA 1ANIA 4B56A 5EGEA 1HJKA 3IGYB 4LR7A 2IUCB 3B5QA 4UPKA 2GA3A 4KAYA 3IGZB 3WAVA 1N2KA 4LRBA 5LIAA 3Q3QA 2W5WA 4GTXA 3M7VA 5L0EA 3WAYA 1EW2A 2W5XA 3M8ZA 3T00A 1EJJA 3ED4A 1N2LA 1Y7AA 5IJQA 5DLTA 1ALIA 3M8WA 4ZG7A 1FSUA 5TJ3A 4N7TA 4MHXA 4LREA 3UN5A 2W5SA 1KHLA 2W5VA 5IJSA 3UO0A 2X98A 4KJGA 4LR2A 5LQQA 2IFYA 1KH5A 1AJBA 1ANJA 4UPIA 4CYRA 3UN2A 4ZGAA 3MK0A 4UOOA 1EI6A 3UNYA 2GLQA 1HQAA 1K7HA 3DPCA 3MK1A 4FDJA 1AJCA 4NWJA 4KAVA 4KM4A 4CYSA 1ZEFA 3OT9A 1EW8A 3NKPA 5HRTA 4GTZA 1URAA 4CXSA 3NKNA 1AUKA 3NKOA 2XR9A 3A52A 4CXUA 1KH4A 5GRRA 4QAXA 5L0KA 5LRNA 2GSOA 1AJAA 3CMRA 3BDFA 1EW9A 1ALHA 2G9YA 2W5RA 5C66A 1P49A 4KJDA 1ELXA 5LRMA 2W8SA 3T02A 1E3CP 1KH7A 4TN0A 1ALJA 1ZEBA 1SHQA 4UOPA 4UPLA 1AJDA 3UN3A 1E2SP 3MK2A 3NVLA 4LR9A 4ZG9A 1ALKA 3BDGA 4MIVA 3T01A 3NKQA 3NKMA 1KHKA 3DYCA 2W5TA 3WBHA 3TX0A 3M8YA 5K4PA
chains in the Genus database with same CATH superfamily
1E33P 3IDDA 1KHJA 2ANHA 1HDHA 1E1ZP 4NWXA 2VQRA 1EQJA 1KH9A 2QZUA 5GOVA 5INHA 4LRCA 3LXQA 3SZZA 4LRDA 2RH6A 4LR8A 4LRAA 1B8JA 5AJ9A 1ELZA 2GSNA 1O98A 3WAXA 3BDGB 3TWZA 2IUCA 5KXAA 1ED9A 2W8DA 4FDIA 4ZG6A 1SHNA 4UORA 4CXKA 1URBA 4UPHA 1ED8A 5L0BA 4GTWA 5DLWA 1ELYA 1Y6VA 2D1GA 1KHNA 2ZKTA 1ZEDA 4GTYA 5DLVA 3BDHA 4YR1A 3WAWA 5EGHA 1O99A 3SZYA 3TG0A 3E2DA 4MY4A 2W5QA 4LQYA 4LRFA 3NKRA 2GSUA 3KD8A 2XRGA 1ANIA 4B56A 5EGEA 1HJKA 3IGYB 4LR7A 2IUCB 3B5QA 4UPKA 2GA3A 4KAYA 3IGZB 3WAVA 1N2KA 4LRBA 5LIAA 3Q3QA 2W5WA 4GTXA 3M7VA 5L0EA 3WAYA 1EW2A 2W5XA 3M8ZA 3T00A 1EJJA 3ED4A 1N2LA 1Y7AA 5IJQA 5DLTA 1ALIA 3M8WA 4ZG7A 1FSUA 5TJ3A 4N7TA 4MHXA 4LREA 3UN5A 2W5SA 1KHLA 2W5VA 5IJSA 3UO0A 2X98A 4KJGA 4LR2A 5LQQA 2IFYA 1KH5A 1AJBA 1ANJA 4UPIA 4CYRA 3UN2A 4ZGAA 3MK0A 4UOOA 1EI6A 3UNYA 2GLQA 1HQAA 1K7HA 3DPCA 3MK1A 4FDJA 1AJCA 4NWJA 4KAVA 4KM4A 4CYSA 1ZEFA 3OT9A 1EW8A 3NKPA 5HRTA 4GTZA 1URAA 4CXSA 3NKNA 1AUKA 3NKOA 2XR9A 3A52A 4CXUA 1KH4A 5GRRA 4QAXA 5L0KA 5LRNA 2GSOA 1AJAA 3CMRA 3BDFA 1EW9A 1ALHA 2G9YA 2W5RA 5C66A 1P49A 4KJDA 1ELXA 5LRMA 2W8SA 3T02A 1E3CP 1KH7A 4TN0A 1ALJA 1ZEBA 1SHQA 4UOPA 4UPLA 1AJDA 3UN3A 1E2SP 3MK2A 3NVLA 4LR9A 4ZG9A 1ALKA 3BDGA 4MIVA 3T01A 3NKQA 3NKMA 1KHKA 3DYCA 2W5TA 3WBHA 3TX0A 3M8YA 5K4PA
chains in the Genus database with same CATH topology
1E33P 3IDDA 1KHJA 2ANHA 1HDHA 1E1ZP 4NWXA 2VQRA 1EQJA 1KH9A 2QZUA 5GOVA 5INHA 4LRCA 3LXQA 3SZZA 4LRDA 2RH6A 4LR8A 4LRAA 1B8JA 5AJ9A 1ELZA 2GSNA 1O98A 3WAXA 3BDGB 3TWZA 2IUCA 5KXAA 1ED9A 2W8DA 4FDIA 4ZG6A 1SHNA 4UORA 4CXKA 1URBA 4UPHA 1ED8A 5L0BA 4GTWA 5DLWA 1ELYA 1Y6VA 2D1GA 1KHNA 2ZKTA 1ZEDA 4GTYA 5DLVA 3BDHA 4YR1A 3WAWA 5EGHA 1O99A 3SZYA 3TG0A 3E2DA 4MY4A 2W5QA 4LQYA 4LRFA 3NKRA 2GSUA 3KD8A 2XRGA 1ANIA 4B56A 5EGEA 1HJKA 3IGYB 4LR7A 2IUCB 3B5QA 4UPKA 2GA3A 4KAYA 3IGZB 3WAVA 1N2KA 4LRBA 5LIAA 3Q3QA 2W5WA 4GTXA 3M7VA 5L0EA 3WAYA 1EW2A 2W5XA 3M8ZA 3T00A 1EJJA 3ED4A 1N2LA 1Y7AA 5IJQA 5DLTA 1ALIA 3M8WA 4ZG7A 1FSUA 5TJ3A 4N7TA 4MHXA 4LREA 3UN5A 2W5SA 1KHLA 2W5VA 5IJSA 3UO0A 2X98A 4KJGA 4LR2A 5LQQA 2IFYA 1KH5A 1AJBA 1ANJA 4UPIA 4CYRA 3UN2A 4ZGAA 3MK0A 4UOOA 1EI6A 3UNYA 2GLQA 1HQAA 1K7HA 3DPCA 3MK1A 4FDJA 1AJCA 4NWJA 4KAVA 4KM4A 4CYSA 1ZEFA 3OT9A 1EW8A 3NKPA 5HRTA 4GTZA 1URAA 4CXSA 3NKNA 1AUKA 3NKOA 2XR9A 3A52A 4CXUA 1KH4A 5GRRA 4QAXA 5L0KA 5LRNA 2GSOA 1AJAA 3CMRA 3BDFA 1EW9A 1ALHA 2G9YA 2W5RA 5C66A 1P49A 4KJDA 1ELXA 5LRMA 2W8SA 3T02A 1E3CP 1KH7A 4TN0A 1ALJA 1ZEBA 1SHQA 4UOPA 4UPLA 1AJDA 3UN3A 1E2SP 3MK2A 3NVLA 4LR9A 4ZG9A 1ALKA 3BDGA 4MIVA 3T01A 3NKQA 3NKMA 1KHKA 3DYCA 2W5TA 3WBHA 3TX0A 3M8YA 5K4PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E33 P;  3IDD A;  1KHJ A;  2ANH A;  1HDH A;  1E1Z P;  4NWX A;  2VQR A;  1EQJ A;  1KH9 A;  2QZU A;  5GOV A;  5INH A;  4LRC A;  3LXQ A;  3SZZ A;  4LRD A;  2RH6 A;  4LR8 A;  4LRA A;  1B8J A;  5AJ9 A;  1ELZ A;  2GSN A;  1O98 A;  3WAX A;  3BDG B;  3TWZ A;  2IUC A;  5KXA A;  1ED9 A;  2W8D A;  4FDI A;  4ZG6 A;  1SHN A;  4UOR A;  4CXK A;  1URB A;  4UPH A;  1ED8 A;  5L0B A;  4GTW A;  5DLW A;  1ELY A;  1Y6V A;  2D1G A;  1KHN A;  2ZKT A;  1ZED A;  4GTY A;  5DLV A;  3BDH A;  4YR1 A;  3WAW A;  5EGH A;  1O99 A;  3SZY A;  3TG0 A;  3E2D A;  4MY4 A;  2W5Q A;  4LQY A;  4LRF A;  3NKR A;  2GSU A;  3KD8 A;  2XRG A;  1ANI A;  4B56 A;  5EGE A;  1HJK A;  3IGY B;  4LR7 A;  2IUC B;  3B5Q A;  4UPK A;  2GA3 A;  4KAY A;  3IGZ B;  3WAV A;  1N2K A;  4LRB A;  5LIA A;  3Q3Q A;  2W5W A;  4GTX A;  3M7V A;  5L0E A;  3WAY A;  1EW2 A;  2W5X A;  3M8Z A;  3T00 A;  1EJJ A;  3ED4 A;  1N2L A;  1Y7A A;  5IJQ A;  5DLT A;  1ALI A;  3M8W A;  4ZG7 A;  1FSU A;  5TJ3 A;  4N7T A;  4MHX A;  4LRE A;  3UN5 A;  2W5S A;  1KHL A;  2W5V A;  5IJS A;  3UO0 A;  2X98 A;  4KJG A;  4LR2 A;  5LQQ A;  2IFY A;  1KH5 A;  1AJB A;  1ANJ A;  4UPI A;  4CYR A;  3UN2 A;  4ZGA A;  3MK0 A;  4UOO A;  1EI6 A;  3UNY A;  2GLQ A;  1HQA A;  1K7H A;  3DPC A;  3MK1 A;  4FDJ A;  1AJC A;  4NWJ A;  4KAV A;  4KM4 A;  4CYS A;  1ZEF A;  3OT9 A;  1EW8 A;  3NKP A;  5HRT A;  4GTZ A;  1URA A;  4CXS A;  3NKN A;  1AUK A;  3NKO A;  2XR9 A;  3A52 A;  4CXU A;  1KH4 A;  5GRR A;  4QAX A;  5L0K A;  5LRN A;  2GSO A;  1AJA A;  3CMR A;  3BDF A;  1EW9 A;  1ALH A;  2G9Y A;  2W5R A;  5C66 A;  1P49 A;  4KJD A;  1ELX A;  5LRM A;  2W8S A;  3T02 A;  1E3C P;  1KH7 A;  4TN0 A;  1ALJ A;  1ZEB A;  1SHQ A;  4UOP A;  4UPL A;  1AJD A;  3UN3 A;  1E2S P;  3MK2 A;  3NVL A;  4LR9 A;  4ZG9 A;  1ALK A;  3BDG A;  4MIV A;  3T01 A;  3NKQ A;  3NKM A;  1KHK A;  3DYC A;  2W5T A;  3WBH A;  3TX0 A;  3M8Y A;  5K4P A; 
#chains in the Genus database with same CATH topology
 1E33 P;  3IDD A;  1KHJ A;  2ANH A;  1HDH A;  1E1Z P;  4NWX A;  2VQR A;  1EQJ A;  1KH9 A;  2QZU A;  5GOV A;  5INH A;  4LRC A;  3LXQ A;  3SZZ A;  4LRD A;  2RH6 A;  4LR8 A;  4LRA A;  1B8J A;  5AJ9 A;  1ELZ A;  2GSN A;  1O98 A;  3WAX A;  3BDG B;  3TWZ A;  2IUC A;  5KXA A;  1ED9 A;  2W8D A;  4FDI A;  4ZG6 A;  1SHN A;  4UOR A;  4CXK A;  1URB A;  4UPH A;  1ED8 A;  5L0B A;  4GTW A;  5DLW A;  1ELY A;  1Y6V A;  2D1G A;  1KHN A;  2ZKT A;  1ZED A;  4GTY A;  5DLV A;  3BDH A;  4YR1 A;  3WAW A;  5EGH A;  1O99 A;  3SZY A;  3TG0 A;  3E2D A;  4MY4 A;  2W5Q A;  4LQY A;  4LRF A;  3NKR A;  2GSU A;  3KD8 A;  2XRG A;  1ANI A;  4B56 A;  5EGE A;  1HJK A;  3IGY B;  4LR7 A;  2IUC B;  3B5Q A;  4UPK A;  2GA3 A;  4KAY A;  3IGZ B;  3WAV A;  1N2K A;  4LRB A;  5LIA A;  3Q3Q A;  2W5W A;  4GTX A;  3M7V A;  5L0E A;  3WAY A;  1EW2 A;  2W5X A;  3M8Z A;  3T00 A;  1EJJ A;  3ED4 A;  1N2L A;  1Y7A A;  5IJQ A;  5DLT A;  1ALI A;  3M8W A;  4ZG7 A;  1FSU A;  5TJ3 A;  4N7T A;  4MHX A;  4LRE A;  3UN5 A;  2W5S A;  1KHL A;  2W5V A;  5IJS A;  3UO0 A;  2X98 A;  4KJG A;  4LR2 A;  5LQQ A;  2IFY A;  1KH5 A;  1AJB A;  1ANJ A;  4UPI A;  4CYR A;  3UN2 A;  4ZGA A;  3MK0 A;  4UOO A;  1EI6 A;  3UNY A;  2GLQ A;  1HQA A;  1K7H A;  3DPC A;  3MK1 A;  4FDJ A;  1AJC A;  4NWJ A;  4KAV A;  4KM4 A;  4CYS A;  1ZEF A;  3OT9 A;  1EW8 A;  3NKP A;  5HRT A;  4GTZ A;  1URA A;  4CXS A;  3NKN A;  1AUK A;  3NKO A;  2XR9 A;  3A52 A;  4CXU A;  1KH4 A;  5GRR A;  4QAX A;  5L0K A;  5LRN A;  2GSO A;  1AJA A;  3CMR A;  3BDF A;  1EW9 A;  1ALH A;  2G9Y A;  2W5R A;  5C66 A;  1P49 A;  4KJD A;  1ELX A;  5LRM A;  2W8S A;  3T02 A;  1E3C P;  1KH7 A;  4TN0 A;  1ALJ A;  1ZEB A;  1SHQ A;  4UOP A;  4UPL A;  1AJD A;  3UN3 A;  1E2S P;  3MK2 A;  3NVL A;  4LR9 A;  4ZG9 A;  1ALK A;  3BDG A;  4MIV A;  3T01 A;  3NKQ A;  3NKM A;  1KHK A;  3DYC A;  2W5T A;  3WBH A;  3TX0 A;  3M8Y A;  5K4P A; 
#chains in the Genus database with same CATH homology
 1E33 P;  3IDD A;  1KHJ A;  2ANH A;  1HDH A;  1E1Z P;  4NWX A;  2VQR A;  1EQJ A;  1KH9 A;  2QZU A;  5GOV A;  5INH A;  4LRC A;  3LXQ A;  3SZZ A;  4LRD A;  2RH6 A;  4LR8 A;  4LRA A;  1B8J A;  5AJ9 A;  1ELZ A;  2GSN A;  1O98 A;  3WAX A;  3BDG B;  3TWZ A;  2IUC A;  5KXA A;  1ED9 A;  2W8D A;  4FDI A;  4ZG6 A;  1SHN A;  4UOR A;  4CXK A;  1URB A;  4UPH A;  1ED8 A;  5L0B A;  4GTW A;  5DLW A;  1ELY A;  1Y6V A;  2D1G A;  1KHN A;  2ZKT A;  1ZED A;  4GTY A;  5DLV A;  3BDH A;  4YR1 A;  3WAW A;  5EGH A;  1O99 A;  3SZY A;  3TG0 A;  3E2D A;  4MY4 A;  2W5Q A;  4LQY A;  4LRF A;  3NKR A;  2GSU A;  3KD8 A;  2XRG A;  1ANI A;  4B56 A;  5EGE A;  1HJK A;  3IGY B;  4LR7 A;  2IUC B;  3B5Q A;  4UPK A;  2GA3 A;  4KAY A;  3IGZ B;  3WAV A;  1N2K A;  4LRB A;  5LIA A;  3Q3Q A;  2W5W A;  4GTX A;  3M7V A;  5L0E A;  3WAY A;  1EW2 A;  2W5X A;  3M8Z A;  3T00 A;  1EJJ A;  3ED4 A;  1N2L A;  1Y7A A;  5IJQ A;  5DLT A;  1ALI A;  3M8W A;  4ZG7 A;  1FSU A;  5TJ3 A;  4N7T A;  4MHX A;  4LRE A;  3UN5 A;  2W5S A;  1KHL A;  2W5V A;  5IJS A;  3UO0 A;  2X98 A;  4KJG A;  4LR2 A;  5LQQ A;  2IFY A;  1KH5 A;  1AJB A;  1ANJ A;  4UPI A;  4CYR A;  3UN2 A;  4ZGA A;  3MK0 A;  4UOO A;  1EI6 A;  3UNY A;  2GLQ A;  1HQA A;  1K7H A;  3DPC A;  3MK1 A;  4FDJ A;  1AJC A;  4NWJ A;  4KAV A;  4KM4 A;  4CYS A;  1ZEF A;  3OT9 A;  1EW8 A;  3NKP A;  5HRT A;  4GTZ A;  1URA A;  4CXS A;  3NKN A;  1AUK A;  3NKO A;  2XR9 A;  3A52 A;  4CXU A;  1KH4 A;  5GRR A;  4QAX A;  5L0K A;  5LRN A;  2GSO A;  1AJA A;  3CMR A;  3BDF A;  1EW9 A;  1ALH A;  2G9Y A;  2W5R A;  5C66 A;  1P49 A;  4KJD A;  1ELX A;  5LRM A;  2W8S A;  3T02 A;  1E3C P;  1KH7 A;  4TN0 A;  1ALJ A;  1ZEB A;  1SHQ A;  4UOP A;  4UPL A;  1AJD A;  3UN3 A;  1E2S P;  3MK2 A;  3NVL A;  4LR9 A;  4ZG9 A;  1ALK A;  3BDG A;  4MIV A;  3T01 A;  3NKQ A;  3NKM A;  1KHK A;  3DYC A;  2W5T A;  3WBH A;  3TX0 A;  3M8Y A;  5K4P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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