3BDGB

Crystal structure of wild-type/t155v mixed dimer of e. coli alkaline phosphatase
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
Knots found
sequence length
446
structure length
433
Chain Sequence
MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
source organism Escherichia coli
total genus 159
structure length 433
sequence length 446
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdgB00
1URBA 2X98A 2GLQA 1HDHA 4NWJA 2W5XA 2W8SA 3MK2A 1E2SP 1ED9A 4KAVA 2W5QA 5AJ9A 5TJ3A 3BDGB 4CYSA 4TN0A 3WAVA 4ZG7A 3UN5A 5IJSA 4B56A 3A52A 2ANHA 4QAXA 3TG0A 4LQYA 3M8ZA 4GTXA 1EJJA 2D1GA 3DYCA 4YR1A 4LR9A 3NKMA 1AJAA 4KJDA 4LRCA 5LIAA 4LR8A 2ZKTA 1ZEBA 1B8JA 3DPCA 1ZEFA 5INHA 3T02A 3UNYA 2W5WA 3M8WA 1O98A 2W5RA 4GTZA 1SHNA 2G9YA 1KHNA 3NKRA 1KHKA 4UPIA 1ALJA 2IFYA 3IGYB 1KH9A 2GA3A 5DLVA 3M8YA 2RH6A 1KH5A 3T00A 4UOOA 1ELZA 1E3CP 3WAYA 4ZG9A 3Q3QA 2XR9A 1KHJA 5GOVA 4N7TA 4UPHA 1AJDA 1EW9A 1O99A 3NKNA 4UPLA 1E1ZP 1AJBA 3E2DA 4CXUA 2IUCB 4NWXA 4LRAA 3UN3A 4MY4A 5C66A 4MIVA 5LRNA 4FDJA 1ED8A 4GTYA 3UO0A 1N2KA 4UORA 5L0BA 5GRRA 2GSNA 1ANJA 5HRTA 2VQRA 3SZZA 4LRBA 4KM4A 4LR2A 3BDFA 1HJKA 3BDGA 1ANIA 1Y6VA 3MK0A 4CXSA 5DLTA 2W8DA 3B5QA 1AUKA 1EW8A 3TX0A 5K4PA 1EQJA 1ALHA 2IUCA 4LRFA 3T01A 1ALIA 1KH4A 3UN2A 1URAA 3MK1A 4UOPA 2GSOA 5L0KA 2W5SA 3SZYA 3M7VA 2W5TA 3LXQA 3OT9A 1ZEDA 1KHLA 3WAXA 5IJQA 3BDHA 2XRGA 2QZUA 3IDDA 5LRMA 4FDIA 3NVLA 1P49A 4UPKA 1E33P 4KJGA 4LR7A 4MHXA 3NKQA 1ELYA 3NKPA 4LREA 3KD8A 3ED4A 5EGEA 1SHQA 5DLWA 4ZG6A 3WAWA 4CXKA 3CMRA 1Y7AA 5EGHA 4LRDA 3NKOA 5LQQA 4CYRA 1KH7A 4GTWA 1N2LA 1K7HA 1EI6A 5KXAA 1FSUA 2GSUA 1ALKA 1EW2A 4KAYA 3TWZA 3WBHA 4ZGAA 2W5VA 1HQAA 1AJCA 5L0EA 1ELXA 3IGZB
chains in the Genus database with same CATH superfamily
1URBA 2X98A 2GLQA 1HDHA 4NWJA 2W5XA 2W8SA 3MK2A 1E2SP 1ED9A 4KAVA 2W5QA 5AJ9A 5TJ3A 3BDGB 4CYSA 4TN0A 3WAVA 4ZG7A 3UN5A 5IJSA 4B56A 3A52A 2ANHA 4QAXA 3TG0A 4LQYA 3M8ZA 4GTXA 1EJJA 2D1GA 3DYCA 4YR1A 4LR9A 3NKMA 1AJAA 4KJDA 4LRCA 5LIAA 4LR8A 2ZKTA 1ZEBA 1B8JA 3DPCA 1ZEFA 5INHA 3T02A 3UNYA 2W5WA 3M8WA 1O98A 2W5RA 4GTZA 1SHNA 2G9YA 1KHNA 3NKRA 1KHKA 4UPIA 1ALJA 2IFYA 3IGYB 1KH9A 2GA3A 5DLVA 3M8YA 2RH6A 1KH5A 3T00A 4UOOA 1ELZA 1E3CP 3WAYA 4ZG9A 3Q3QA 2XR9A 1KHJA 5GOVA 4N7TA 4UPHA 1AJDA 1EW9A 1O99A 3NKNA 4UPLA 1E1ZP 1AJBA 3E2DA 4CXUA 2IUCB 4NWXA 4LRAA 3UN3A 4MY4A 5C66A 4MIVA 5LRNA 4FDJA 1ED8A 4GTYA 3UO0A 1N2KA 4UORA 5L0BA 5GRRA 2GSNA 1ANJA 5HRTA 2VQRA 3SZZA 4LRBA 4KM4A 4LR2A 3BDFA 1HJKA 3BDGA 1ANIA 1Y6VA 3MK0A 4CXSA 5DLTA 2W8DA 3B5QA 1AUKA 1EW8A 3TX0A 5K4PA 1EQJA 1ALHA 2IUCA 4LRFA 3T01A 1ALIA 1KH4A 3UN2A 1URAA 3MK1A 4UOPA 2GSOA 5L0KA 2W5SA 3SZYA 3M7VA 2W5TA 3LXQA 3OT9A 1ZEDA 1KHLA 3WAXA 5IJQA 3BDHA 2XRGA 2QZUA 3IDDA 5LRMA 4FDIA 3NVLA 1P49A 4UPKA 1E33P 4KJGA 4LR7A 4MHXA 3NKQA 1ELYA 3NKPA 4LREA 3KD8A 3ED4A 5EGEA 1SHQA 5DLWA 4ZG6A 3WAWA 4CXKA 3CMRA 1Y7AA 5EGHA 4LRDA 3NKOA 5LQQA 4CYRA 1KH7A 4GTWA 1N2LA 1K7HA 1EI6A 5KXAA 1FSUA 2GSUA 1ALKA 1EW2A 4KAYA 3TWZA 3WBHA 4ZGAA 2W5VA 1HQAA 1AJCA 5L0EA 1ELXA 3IGZB
chains in the Genus database with same CATH topology
1URBA 2X98A 2GLQA 1HDHA 4NWJA 2W5XA 2W8SA 3MK2A 1E2SP 1ED9A 4KAVA 2W5QA 5AJ9A 5TJ3A 3BDGB 4CYSA 4TN0A 3WAVA 4ZG7A 3UN5A 5IJSA 4B56A 3A52A 2ANHA 4QAXA 3TG0A 4LQYA 3M8ZA 4GTXA 1EJJA 2D1GA 3DYCA 4YR1A 4LR9A 3NKMA 1AJAA 4KJDA 4LRCA 5LIAA 4LR8A 2ZKTA 1ZEBA 1B8JA 3DPCA 1ZEFA 5INHA 3T02A 3UNYA 2W5WA 3M8WA 1O98A 2W5RA 4GTZA 1SHNA 2G9YA 1KHNA 3NKRA 1KHKA 4UPIA 1ALJA 2IFYA 3IGYB 1KH9A 2GA3A 5DLVA 3M8YA 2RH6A 1KH5A 3T00A 4UOOA 1ELZA 1E3CP 3WAYA 4ZG9A 3Q3QA 2XR9A 1KHJA 5GOVA 4N7TA 4UPHA 1AJDA 1EW9A 1O99A 3NKNA 4UPLA 1E1ZP 1AJBA 3E2DA 4CXUA 2IUCB 4NWXA 4LRAA 3UN3A 4MY4A 5C66A 4MIVA 5LRNA 4FDJA 1ED8A 4GTYA 3UO0A 1N2KA 4UORA 5L0BA 5GRRA 2GSNA 1ANJA 5HRTA 2VQRA 3SZZA 4LRBA 4KM4A 4LR2A 3BDFA 1HJKA 3BDGA 1ANIA 1Y6VA 3MK0A 4CXSA 5DLTA 2W8DA 3B5QA 1AUKA 1EW8A 3TX0A 5K4PA 1EQJA 1ALHA 2IUCA 4LRFA 3T01A 1ALIA 1KH4A 3UN2A 1URAA 3MK1A 4UOPA 2GSOA 5L0KA 2W5SA 3SZYA 3M7VA 2W5TA 3LXQA 3OT9A 1ZEDA 1KHLA 3WAXA 5IJQA 3BDHA 2XRGA 2QZUA 3IDDA 5LRMA 4FDIA 3NVLA 1P49A 4UPKA 1E33P 4KJGA 4LR7A 4MHXA 3NKQA 1ELYA 3NKPA 4LREA 3KD8A 3ED4A 5EGEA 1SHQA 5DLWA 4ZG6A 3WAWA 4CXKA 3CMRA 1Y7AA 5EGHA 4LRDA 3NKOA 5LQQA 4CYRA 1KH7A 4GTWA 1N2LA 1K7HA 1EI6A 5KXAA 1FSUA 2GSUA 1ALKA 1EW2A 4KAYA 3TWZA 3WBHA 4ZGAA 2W5VA 1HQAA 1AJCA 5L0EA 1ELXA 3IGZB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1URB A;  2X98 A;  2GLQ A;  1HDH A;  4NWJ A;  2W5X A;  2W8S A;  3MK2 A;  1E2S P;  1ED9 A;  4KAV A;  2W5Q A;  5AJ9 A;  5TJ3 A;  3BDG B;  4CYS A;  4TN0 A;  3WAV A;  4ZG7 A;  3UN5 A;  5IJS A;  4B56 A;  3A52 A;  2ANH A;  4QAX A;  3TG0 A;  4LQY A;  3M8Z A;  4GTX A;  1EJJ A;  2D1G A;  3DYC A;  4YR1 A;  4LR9 A;  3NKM A;  1AJA A;  4KJD A;  4LRC A;  5LIA A;  4LR8 A;  2ZKT A;  1ZEB A;  1B8J A;  3DPC A;  1ZEF A;  5INH A;  3T02 A;  3UNY A;  2W5W A;  3M8W A;  1O98 A;  2W5R A;  4GTZ A;  1SHN A;  2G9Y A;  1KHN A;  3NKR A;  1KHK A;  4UPI A;  1ALJ A;  2IFY A;  3IGY B;  1KH9 A;  2GA3 A;  5DLV A;  3M8Y A;  2RH6 A;  1KH5 A;  3T00 A;  4UOO A;  1ELZ A;  1E3C P;  3WAY A;  4ZG9 A;  3Q3Q A;  2XR9 A;  1KHJ A;  5GOV A;  4N7T A;  4UPH A;  1AJD A;  1EW9 A;  1O99 A;  3NKN A;  4UPL A;  1E1Z P;  1AJB A;  3E2D A;  4CXU A;  2IUC B;  4NWX A;  4LRA A;  3UN3 A;  4MY4 A;  5C66 A;  4MIV A;  5LRN A;  4FDJ A;  1ED8 A;  4GTY A;  3UO0 A;  1N2K A;  4UOR A;  5L0B A;  5GRR A;  2GSN A;  1ANJ A;  5HRT A;  2VQR A;  3SZZ A;  4LRB A;  4KM4 A;  4LR2 A;  3BDF A;  1HJK A;  3BDG A;  1ANI A;  1Y6V A;  3MK0 A;  4CXS A;  5DLT A;  2W8D A;  3B5Q A;  1AUK A;  1EW8 A;  3TX0 A;  5K4P A;  1EQJ A;  1ALH A;  2IUC A;  4LRF A;  3T01 A;  1ALI A;  1KH4 A;  3UN2 A;  1URA A;  3MK1 A;  4UOP A;  2GSO A;  5L0K A;  2W5S A;  3SZY A;  3M7V A;  2W5T A;  3LXQ A;  3OT9 A;  1ZED A;  1KHL A;  3WAX A;  5IJQ A;  3BDH A;  2XRG A;  2QZU A;  3IDD A;  5LRM A;  4FDI A;  3NVL A;  1P49 A;  4UPK A;  1E33 P;  4KJG A;  4LR7 A;  4MHX A;  3NKQ A;  1ELY A;  3NKP A;  4LRE A;  3KD8 A;  3ED4 A;  5EGE A;  1SHQ A;  5DLW A;  4ZG6 A;  3WAW A;  4CXK A;  3CMR A;  1Y7A A;  5EGH A;  4LRD A;  3NKO A;  5LQQ A;  4CYR A;  1KH7 A;  4GTW A;  1N2L A;  1K7H A;  1EI6 A;  5KXA A;  1FSU A;  2GSU A;  1ALK A;  1EW2 A;  4KAY A;  3TWZ A;  3WBH A;  4ZGA A;  2W5V A;  1HQA A;  1AJC A;  5L0E A;  1ELX A;  3IGZ B; 
#chains in the Genus database with same CATH topology
 1URB A;  2X98 A;  2GLQ A;  1HDH A;  4NWJ A;  2W5X A;  2W8S A;  3MK2 A;  1E2S P;  1ED9 A;  4KAV A;  2W5Q A;  5AJ9 A;  5TJ3 A;  3BDG B;  4CYS A;  4TN0 A;  3WAV A;  4ZG7 A;  3UN5 A;  5IJS A;  4B56 A;  3A52 A;  2ANH A;  4QAX A;  3TG0 A;  4LQY A;  3M8Z A;  4GTX A;  1EJJ A;  2D1G A;  3DYC A;  4YR1 A;  4LR9 A;  3NKM A;  1AJA A;  4KJD A;  4LRC A;  5LIA A;  4LR8 A;  2ZKT A;  1ZEB A;  1B8J A;  3DPC A;  1ZEF A;  5INH A;  3T02 A;  3UNY A;  2W5W A;  3M8W A;  1O98 A;  2W5R A;  4GTZ A;  1SHN A;  2G9Y A;  1KHN A;  3NKR A;  1KHK A;  4UPI A;  1ALJ A;  2IFY A;  3IGY B;  1KH9 A;  2GA3 A;  5DLV A;  3M8Y A;  2RH6 A;  1KH5 A;  3T00 A;  4UOO A;  1ELZ A;  1E3C P;  3WAY A;  4ZG9 A;  3Q3Q A;  2XR9 A;  1KHJ A;  5GOV A;  4N7T A;  4UPH A;  1AJD A;  1EW9 A;  1O99 A;  3NKN A;  4UPL A;  1E1Z P;  1AJB A;  3E2D A;  4CXU A;  2IUC B;  4NWX A;  4LRA A;  3UN3 A;  4MY4 A;  5C66 A;  4MIV A;  5LRN A;  4FDJ A;  1ED8 A;  4GTY A;  3UO0 A;  1N2K A;  4UOR A;  5L0B A;  5GRR A;  2GSN A;  1ANJ A;  5HRT A;  2VQR A;  3SZZ A;  4LRB A;  4KM4 A;  4LR2 A;  3BDF A;  1HJK A;  3BDG A;  1ANI A;  1Y6V A;  3MK0 A;  4CXS A;  5DLT A;  2W8D A;  3B5Q A;  1AUK A;  1EW8 A;  3TX0 A;  5K4P A;  1EQJ A;  1ALH A;  2IUC A;  4LRF A;  3T01 A;  1ALI A;  1KH4 A;  3UN2 A;  1URA A;  3MK1 A;  4UOP A;  2GSO A;  5L0K A;  2W5S A;  3SZY A;  3M7V A;  2W5T A;  3LXQ A;  3OT9 A;  1ZED A;  1KHL A;  3WAX A;  5IJQ A;  3BDH A;  2XRG A;  2QZU A;  3IDD A;  5LRM A;  4FDI A;  3NVL A;  1P49 A;  4UPK A;  1E33 P;  4KJG A;  4LR7 A;  4MHX A;  3NKQ A;  1ELY A;  3NKP A;  4LRE A;  3KD8 A;  3ED4 A;  5EGE A;  1SHQ A;  5DLW A;  4ZG6 A;  3WAW A;  4CXK A;  3CMR A;  1Y7A A;  5EGH A;  4LRD A;  3NKO A;  5LQQ A;  4CYR A;  1KH7 A;  4GTW A;  1N2L A;  1K7H A;  1EI6 A;  5KXA A;  1FSU A;  2GSU A;  1ALK A;  1EW2 A;  4KAY A;  3TWZ A;  3WBH A;  4ZGA A;  2W5V A;  1HQA A;  1AJC A;  5L0E A;  1ELX A;  3IGZ B; 
#chains in the Genus database with same CATH homology
 1URB A;  2X98 A;  2GLQ A;  1HDH A;  4NWJ A;  2W5X A;  2W8S A;  3MK2 A;  1E2S P;  1ED9 A;  4KAV A;  2W5Q A;  5AJ9 A;  5TJ3 A;  3BDG B;  4CYS A;  4TN0 A;  3WAV A;  4ZG7 A;  3UN5 A;  5IJS A;  4B56 A;  3A52 A;  2ANH A;  4QAX A;  3TG0 A;  4LQY A;  3M8Z A;  4GTX A;  1EJJ A;  2D1G A;  3DYC A;  4YR1 A;  4LR9 A;  3NKM A;  1AJA A;  4KJD A;  4LRC A;  5LIA A;  4LR8 A;  2ZKT A;  1ZEB A;  1B8J A;  3DPC A;  1ZEF A;  5INH A;  3T02 A;  3UNY A;  2W5W A;  3M8W A;  1O98 A;  2W5R A;  4GTZ A;  1SHN A;  2G9Y A;  1KHN A;  3NKR A;  1KHK A;  4UPI A;  1ALJ A;  2IFY A;  3IGY B;  1KH9 A;  2GA3 A;  5DLV A;  3M8Y A;  2RH6 A;  1KH5 A;  3T00 A;  4UOO A;  1ELZ A;  1E3C P;  3WAY A;  4ZG9 A;  3Q3Q A;  2XR9 A;  1KHJ A;  5GOV A;  4N7T A;  4UPH A;  1AJD A;  1EW9 A;  1O99 A;  3NKN A;  4UPL A;  1E1Z P;  1AJB A;  3E2D A;  4CXU A;  2IUC B;  4NWX A;  4LRA A;  3UN3 A;  4MY4 A;  5C66 A;  4MIV A;  5LRN A;  4FDJ A;  1ED8 A;  4GTY A;  3UO0 A;  1N2K A;  4UOR A;  5L0B A;  5GRR A;  2GSN A;  1ANJ A;  5HRT A;  2VQR A;  3SZZ A;  4LRB A;  4KM4 A;  4LR2 A;  3BDF A;  1HJK A;  3BDG A;  1ANI A;  1Y6V A;  3MK0 A;  4CXS A;  5DLT A;  2W8D A;  3B5Q A;  1AUK A;  1EW8 A;  3TX0 A;  5K4P A;  1EQJ A;  1ALH A;  2IUC A;  4LRF A;  3T01 A;  1ALI A;  1KH4 A;  3UN2 A;  1URA A;  3MK1 A;  4UOP A;  2GSO A;  5L0K A;  2W5S A;  3SZY A;  3M7V A;  2W5T A;  3LXQ A;  3OT9 A;  1ZED A;  1KHL A;  3WAX A;  5IJQ A;  3BDH A;  2XRG A;  2QZU A;  3IDD A;  5LRM A;  4FDI A;  3NVL A;  1P49 A;  4UPK A;  1E33 P;  4KJG A;  4LR7 A;  4MHX A;  3NKQ A;  1ELY A;  3NKP A;  4LRE A;  3KD8 A;  3ED4 A;  5EGE A;  1SHQ A;  5DLW A;  4ZG6 A;  3WAW A;  4CXK A;  3CMR A;  1Y7A A;  5EGH A;  4LRD A;  3NKO A;  5LQQ A;  4CYR A;  1KH7 A;  4GTW A;  1N2L A;  1K7H A;  1EI6 A;  5KXA A;  1FSU A;  2GSU A;  1ALK A;  1EW2 A;  4KAY A;  3TWZ A;  3WBH A;  4ZGA A;  2W5V A;  1HQA A;  1AJC A;  5L0E A;  1ELX A;  3IGZ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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