3BDHA

Crystal structure of zinc-deficient wild-type e. coli alkaline phosphatase
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
Knots found
sequence length
449
structure length
449
Chain Sequence
TPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Alkaline phosphatase
publication title The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
rcsb
source organism Escherichia coli
total genus 154
structure length 449
sequence length 449
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2007-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3bdhA00
3T00A 1K7HA 1KH5A 3NKPA 4LRCA 4N7TA 4NWXA 1SHNA 3WAXA 3ED4A 3T01A 3SZZA 1SHQA 2D1GA 2QZUA 3WAYA 2GSOA 3IGYB 4UOOA 1E33P 4MHXA 1ELXA 3LXQA 4LREA 5LQQA 2RH6A 4TN0A 2XRGA 4B56A 3NVLA 1ALHA 1ZEDA 4GTZA 4KJGA 1KHLA 4NWJA 5GRRA 4GTWA 1P49A 2W5QA 2IFYA 3WBHA 5K4PA 4GTYA 1ELYA 2W5SA 4ZG7A 4UPKA 3SZYA 3MK2A 1EQJA 1E1ZP 3MK1A 5GOVA 1AJDA 5LRMA 3NKNA 1FSUA 1ZEBA 1AJBA 1HJKA 2W5TA 2GSNA 1EI6A 2W5XA 4CXSA 3TG0A 4LQYA 2G9YA 1EJJA 3BDHA 4MY4A 2W8DA 3UN5A 4ZG6A 5IJSA 3NKOA 4LR7A 1KHJA 1N2LA 2GLQA 5LRNA 5EGHA 4CXKA 5LIAA 3BDGA 5DLWA 2IUCA 5DLTA 4UOPA 1ALKA 1ELZA 4CYSA 3MK0A 3E2DA 4LRAA 1KH7A 4LR8A 1Y7AA 4YR1A 2VQRA 1B8JA 4KAVA 1ED8A 4KJDA 2W8SA 5EGEA 3NKRA 4LR9A 1AJAA 3WAVA 3UN3A 3BDFA 3KD8A 4FDJA 3M8YA 1KH4A 1Y6VA 5HRTA 2GA3A 3T02A 3A52A 3UN2A 1HQAA 1E3CP 2XR9A 2W5RA 1EW9A 4KM4A 2X98A 2GSUA 3BDGB 4KAYA 3DPCA 1EW2A 1AJCA 2IUCB 1ANJA 4CYRA 1O99A 3DYCA 4UPLA 1KHNA 1URAA 1ED9A 3NKMA 3Q3QA 4LRDA 1URBA 1ANIA 2ANHA 3NKQA 3UNYA 1O98A 4UPIA 3TX0A 5L0BA 4MIVA 5L0KA 3IDDA 1KH9A 1KHKA 2W5WA 1ALJA 4UPHA 1ZEFA 4UORA 3UO0A 3WAWA 3OT9A 4LRBA 5IJQA 3B5QA 3CMRA 1E2SP 4FDIA 4ZG9A 5DLVA 5AJ9A 1HDHA 4LRFA 4QAXA 5KXAA 5INHA 4ZGAA 5TJ3A 2W5VA 3M7VA 3IGZB 4LR2A 1AUKA 3M8WA 1N2KA 4GTXA 1ALIA 3TWZA 4CXUA 5L0EA 1EW8A 2ZKTA 3M8ZA 5C66A
chains in the Genus database with same CATH superfamily
3T00A 1K7HA 1KH5A 3NKPA 4LRCA 4N7TA 4NWXA 1SHNA 3WAXA 3ED4A 3T01A 3SZZA 1SHQA 2D1GA 2QZUA 3WAYA 2GSOA 3IGYB 4UOOA 1E33P 4MHXA 1ELXA 3LXQA 4LREA 5LQQA 2RH6A 4TN0A 2XRGA 4B56A 3NVLA 1ALHA 1ZEDA 4GTZA 4KJGA 1KHLA 4NWJA 5GRRA 4GTWA 1P49A 2W5QA 2IFYA 3WBHA 5K4PA 4GTYA 1ELYA 2W5SA 4ZG7A 4UPKA 3SZYA 3MK2A 1EQJA 1E1ZP 3MK1A 5GOVA 1AJDA 5LRMA 3NKNA 1FSUA 1ZEBA 1AJBA 1HJKA 2W5TA 2GSNA 1EI6A 2W5XA 4CXSA 3TG0A 4LQYA 2G9YA 1EJJA 3BDHA 4MY4A 2W8DA 3UN5A 4ZG6A 5IJSA 3NKOA 4LR7A 1KHJA 1N2LA 2GLQA 5LRNA 5EGHA 4CXKA 5LIAA 3BDGA 5DLWA 2IUCA 5DLTA 4UOPA 1ALKA 1ELZA 4CYSA 3MK0A 3E2DA 4LRAA 1KH7A 4LR8A 1Y7AA 4YR1A 2VQRA 1B8JA 4KAVA 1ED8A 4KJDA 2W8SA 5EGEA 3NKRA 4LR9A 1AJAA 3WAVA 3UN3A 3BDFA 3KD8A 4FDJA 3M8YA 1KH4A 1Y6VA 5HRTA 2GA3A 3T02A 3A52A 3UN2A 1HQAA 1E3CP 2XR9A 2W5RA 1EW9A 4KM4A 2X98A 2GSUA 3BDGB 4KAYA 3DPCA 1EW2A 1AJCA 2IUCB 1ANJA 4CYRA 1O99A 3DYCA 4UPLA 1KHNA 1URAA 1ED9A 3NKMA 3Q3QA 4LRDA 1URBA 1ANIA 2ANHA 3NKQA 3UNYA 1O98A 4UPIA 3TX0A 5L0BA 4MIVA 5L0KA 3IDDA 1KH9A 1KHKA 2W5WA 1ALJA 4UPHA 1ZEFA 4UORA 3UO0A 3WAWA 3OT9A 4LRBA 5IJQA 3B5QA 3CMRA 1E2SP 4FDIA 4ZG9A 5DLVA 5AJ9A 1HDHA 4LRFA 4QAXA 5KXAA 5INHA 4ZGAA 5TJ3A 2W5VA 3M7VA 3IGZB 4LR2A 1AUKA 3M8WA 1N2KA 4GTXA 1ALIA 3TWZA 4CXUA 5L0EA 1EW8A 2ZKTA 3M8ZA 5C66A
chains in the Genus database with same CATH topology
3T00A 1K7HA 1KH5A 3NKPA 4LRCA 4N7TA 4NWXA 1SHNA 3WAXA 3ED4A 3T01A 3SZZA 1SHQA 2D1GA 2QZUA 3WAYA 2GSOA 3IGYB 4UOOA 1E33P 4MHXA 1ELXA 3LXQA 4LREA 5LQQA 2RH6A 4TN0A 2XRGA 4B56A 3NVLA 1ALHA 1ZEDA 4GTZA 4KJGA 1KHLA 4NWJA 5GRRA 4GTWA 1P49A 2W5QA 2IFYA 3WBHA 5K4PA 4GTYA 1ELYA 2W5SA 4ZG7A 4UPKA 3SZYA 3MK2A 1EQJA 1E1ZP 3MK1A 5GOVA 1AJDA 5LRMA 3NKNA 1FSUA 1ZEBA 1AJBA 1HJKA 2W5TA 2GSNA 1EI6A 2W5XA 4CXSA 3TG0A 4LQYA 2G9YA 1EJJA 3BDHA 4MY4A 2W8DA 3UN5A 4ZG6A 5IJSA 3NKOA 4LR7A 1KHJA 1N2LA 2GLQA 5LRNA 5EGHA 4CXKA 5LIAA 3BDGA 5DLWA 2IUCA 5DLTA 4UOPA 1ALKA 1ELZA 4CYSA 3MK0A 3E2DA 4LRAA 1KH7A 4LR8A 1Y7AA 4YR1A 2VQRA 1B8JA 4KAVA 1ED8A 4KJDA 2W8SA 5EGEA 3NKRA 4LR9A 1AJAA 3WAVA 3UN3A 3BDFA 3KD8A 4FDJA 3M8YA 1KH4A 1Y6VA 5HRTA 2GA3A 3T02A 3A52A 3UN2A 1HQAA 1E3CP 2XR9A 2W5RA 1EW9A 4KM4A 2X98A 2GSUA 3BDGB 4KAYA 3DPCA 1EW2A 1AJCA 2IUCB 1ANJA 4CYRA 1O99A 3DYCA 4UPLA 1KHNA 1URAA 1ED9A 3NKMA 3Q3QA 4LRDA 1URBA 1ANIA 2ANHA 3NKQA 3UNYA 1O98A 4UPIA 3TX0A 5L0BA 4MIVA 5L0KA 3IDDA 1KH9A 1KHKA 2W5WA 1ALJA 4UPHA 1ZEFA 4UORA 3UO0A 3WAWA 3OT9A 4LRBA 5IJQA 3B5QA 3CMRA 1E2SP 4FDIA 4ZG9A 5DLVA 5AJ9A 1HDHA 4LRFA 4QAXA 5KXAA 5INHA 4ZGAA 5TJ3A 2W5VA 3M7VA 3IGZB 4LR2A 1AUKA 3M8WA 1N2KA 4GTXA 1ALIA 3TWZA 4CXUA 5L0EA 1EW8A 2ZKTA 3M8ZA 5C66A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T00 A;  1K7H A;  1KH5 A;  3NKP A;  4LRC A;  4N7T A;  4NWX A;  1SHN A;  3WAX A;  3ED4 A;  3T01 A;  3SZZ A;  1SHQ A;  2D1G A;  2QZU A;  3WAY A;  2GSO A;  3IGY B;  4UOO A;  1E33 P;  4MHX A;  1ELX A;  3LXQ A;  4LRE A;  5LQQ A;  2RH6 A;  4TN0 A;  2XRG A;  4B56 A;  3NVL A;  1ALH A;  1ZED A;  4GTZ A;  4KJG A;  1KHL A;  4NWJ A;  5GRR A;  4GTW A;  1P49 A;  2W5Q A;  2IFY A;  3WBH A;  5K4P A;  4GTY A;  1ELY A;  2W5S A;  4ZG7 A;  4UPK A;  3SZY A;  3MK2 A;  1EQJ A;  1E1Z P;  3MK1 A;  5GOV A;  1AJD A;  5LRM A;  3NKN A;  1FSU A;  1ZEB A;  1AJB A;  1HJK A;  2W5T A;  2GSN A;  1EI6 A;  2W5X A;  4CXS A;  3TG0 A;  4LQY A;  2G9Y A;  1EJJ A;  3BDH A;  4MY4 A;  2W8D A;  3UN5 A;  4ZG6 A;  5IJS A;  3NKO A;  4LR7 A;  1KHJ A;  1N2L A;  2GLQ A;  5LRN A;  5EGH A;  4CXK A;  5LIA A;  3BDG A;  5DLW A;  2IUC A;  5DLT A;  4UOP A;  1ALK A;  1ELZ A;  4CYS A;  3MK0 A;  3E2D A;  4LRA A;  1KH7 A;  4LR8 A;  1Y7A A;  4YR1 A;  2VQR A;  1B8J A;  4KAV A;  1ED8 A;  4KJD A;  2W8S A;  5EGE A;  3NKR A;  4LR9 A;  1AJA A;  3WAV A;  3UN3 A;  3BDF A;  3KD8 A;  4FDJ A;  3M8Y A;  1KH4 A;  1Y6V A;  5HRT A;  2GA3 A;  3T02 A;  3A52 A;  3UN2 A;  1HQA A;  1E3C P;  2XR9 A;  2W5R A;  1EW9 A;  4KM4 A;  2X98 A;  2GSU A;  3BDG B;  4KAY A;  3DPC A;  1EW2 A;  1AJC A;  2IUC B;  1ANJ A;  4CYR A;  1O99 A;  3DYC A;  4UPL A;  1KHN A;  1URA A;  1ED9 A;  3NKM A;  3Q3Q A;  4LRD A;  1URB A;  1ANI A;  2ANH A;  3NKQ A;  3UNY A;  1O98 A;  4UPI A;  3TX0 A;  5L0B A;  4MIV A;  5L0K A;  3IDD A;  1KH9 A;  1KHK A;  2W5W A;  1ALJ A;  4UPH A;  1ZEF A;  4UOR A;  3UO0 A;  3WAW A;  3OT9 A;  4LRB A;  5IJQ A;  3B5Q A;  3CMR A;  1E2S P;  4FDI A;  4ZG9 A;  5DLV A;  5AJ9 A;  1HDH A;  4LRF A;  4QAX A;  5KXA A;  5INH A;  4ZGA A;  5TJ3 A;  2W5V A;  3M7V A;  3IGZ B;  4LR2 A;  1AUK A;  3M8W A;  1N2K A;  4GTX A;  1ALI A;  3TWZ A;  4CXU A;  5L0E A;  1EW8 A;  2ZKT A;  3M8Z A;  5C66 A; 
#chains in the Genus database with same CATH topology
 3T00 A;  1K7H A;  1KH5 A;  3NKP A;  4LRC A;  4N7T A;  4NWX A;  1SHN A;  3WAX A;  3ED4 A;  3T01 A;  3SZZ A;  1SHQ A;  2D1G A;  2QZU A;  3WAY A;  2GSO A;  3IGY B;  4UOO A;  1E33 P;  4MHX A;  1ELX A;  3LXQ A;  4LRE A;  5LQQ A;  2RH6 A;  4TN0 A;  2XRG A;  4B56 A;  3NVL A;  1ALH A;  1ZED A;  4GTZ A;  4KJG A;  1KHL A;  4NWJ A;  5GRR A;  4GTW A;  1P49 A;  2W5Q A;  2IFY A;  3WBH A;  5K4P A;  4GTY A;  1ELY A;  2W5S A;  4ZG7 A;  4UPK A;  3SZY A;  3MK2 A;  1EQJ A;  1E1Z P;  3MK1 A;  5GOV A;  1AJD A;  5LRM A;  3NKN A;  1FSU A;  1ZEB A;  1AJB A;  1HJK A;  2W5T A;  2GSN A;  1EI6 A;  2W5X A;  4CXS A;  3TG0 A;  4LQY A;  2G9Y A;  1EJJ A;  3BDH A;  4MY4 A;  2W8D A;  3UN5 A;  4ZG6 A;  5IJS A;  3NKO A;  4LR7 A;  1KHJ A;  1N2L A;  2GLQ A;  5LRN A;  5EGH A;  4CXK A;  5LIA A;  3BDG A;  5DLW A;  2IUC A;  5DLT A;  4UOP A;  1ALK A;  1ELZ A;  4CYS A;  3MK0 A;  3E2D A;  4LRA A;  1KH7 A;  4LR8 A;  1Y7A A;  4YR1 A;  2VQR A;  1B8J A;  4KAV A;  1ED8 A;  4KJD A;  2W8S A;  5EGE A;  3NKR A;  4LR9 A;  1AJA A;  3WAV A;  3UN3 A;  3BDF A;  3KD8 A;  4FDJ A;  3M8Y A;  1KH4 A;  1Y6V A;  5HRT A;  2GA3 A;  3T02 A;  3A52 A;  3UN2 A;  1HQA A;  1E3C P;  2XR9 A;  2W5R A;  1EW9 A;  4KM4 A;  2X98 A;  2GSU A;  3BDG B;  4KAY A;  3DPC A;  1EW2 A;  1AJC A;  2IUC B;  1ANJ A;  4CYR A;  1O99 A;  3DYC A;  4UPL A;  1KHN A;  1URA A;  1ED9 A;  3NKM A;  3Q3Q A;  4LRD A;  1URB A;  1ANI A;  2ANH A;  3NKQ A;  3UNY A;  1O98 A;  4UPI A;  3TX0 A;  5L0B A;  4MIV A;  5L0K A;  3IDD A;  1KH9 A;  1KHK A;  2W5W A;  1ALJ A;  4UPH A;  1ZEF A;  4UOR A;  3UO0 A;  3WAW A;  3OT9 A;  4LRB A;  5IJQ A;  3B5Q A;  3CMR A;  1E2S P;  4FDI A;  4ZG9 A;  5DLV A;  5AJ9 A;  1HDH A;  4LRF A;  4QAX A;  5KXA A;  5INH A;  4ZGA A;  5TJ3 A;  2W5V A;  3M7V A;  3IGZ B;  4LR2 A;  1AUK A;  3M8W A;  1N2K A;  4GTX A;  1ALI A;  3TWZ A;  4CXU A;  5L0E A;  1EW8 A;  2ZKT A;  3M8Z A;  5C66 A; 
#chains in the Genus database with same CATH homology
 3T00 A;  1K7H A;  1KH5 A;  3NKP A;  4LRC A;  4N7T A;  4NWX A;  1SHN A;  3WAX A;  3ED4 A;  3T01 A;  3SZZ A;  1SHQ A;  2D1G A;  2QZU A;  3WAY A;  2GSO A;  3IGY B;  4UOO A;  1E33 P;  4MHX A;  1ELX A;  3LXQ A;  4LRE A;  5LQQ A;  2RH6 A;  4TN0 A;  2XRG A;  4B56 A;  3NVL A;  1ALH A;  1ZED A;  4GTZ A;  4KJG A;  1KHL A;  4NWJ A;  5GRR A;  4GTW A;  1P49 A;  2W5Q A;  2IFY A;  3WBH A;  5K4P A;  4GTY A;  1ELY A;  2W5S A;  4ZG7 A;  4UPK A;  3SZY A;  3MK2 A;  1EQJ A;  1E1Z P;  3MK1 A;  5GOV A;  1AJD A;  5LRM A;  3NKN A;  1FSU A;  1ZEB A;  1AJB A;  1HJK A;  2W5T A;  2GSN A;  1EI6 A;  2W5X A;  4CXS A;  3TG0 A;  4LQY A;  2G9Y A;  1EJJ A;  3BDH A;  4MY4 A;  2W8D A;  3UN5 A;  4ZG6 A;  5IJS A;  3NKO A;  4LR7 A;  1KHJ A;  1N2L A;  2GLQ A;  5LRN A;  5EGH A;  4CXK A;  5LIA A;  3BDG A;  5DLW A;  2IUC A;  5DLT A;  4UOP A;  1ALK A;  1ELZ A;  4CYS A;  3MK0 A;  3E2D A;  4LRA A;  1KH7 A;  4LR8 A;  1Y7A A;  4YR1 A;  2VQR A;  1B8J A;  4KAV A;  1ED8 A;  4KJD A;  2W8S A;  5EGE A;  3NKR A;  4LR9 A;  1AJA A;  3WAV A;  3UN3 A;  3BDF A;  3KD8 A;  4FDJ A;  3M8Y A;  1KH4 A;  1Y6V A;  5HRT A;  2GA3 A;  3T02 A;  3A52 A;  3UN2 A;  1HQA A;  1E3C P;  2XR9 A;  2W5R A;  1EW9 A;  4KM4 A;  2X98 A;  2GSU A;  3BDG B;  4KAY A;  3DPC A;  1EW2 A;  1AJC A;  2IUC B;  1ANJ A;  4CYR A;  1O99 A;  3DYC A;  4UPL A;  1KHN A;  1URA A;  1ED9 A;  3NKM A;  3Q3Q A;  4LRD A;  1URB A;  1ANI A;  2ANH A;  3NKQ A;  3UNY A;  1O98 A;  4UPI A;  3TX0 A;  5L0B A;  4MIV A;  5L0K A;  3IDD A;  1KH9 A;  1KHK A;  2W5W A;  1ALJ A;  4UPH A;  1ZEF A;  4UOR A;  3UO0 A;  3WAW A;  3OT9 A;  4LRB A;  5IJQ A;  3B5Q A;  3CMR A;  1E2S P;  4FDI A;  4ZG9 A;  5DLV A;  5AJ9 A;  1HDH A;  4LRF A;  4QAX A;  5KXA A;  5INH A;  4ZGA A;  5TJ3 A;  2W5V A;  3M7V A;  3IGZ B;  4LR2 A;  1AUK A;  3M8W A;  1N2K A;  4GTX A;  1ALI A;  3TWZ A;  4CXU A;  5L0E A;  1EW8 A;  2ZKT A;  3M8Z A;  5C66 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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