3BGHA

Crystal structure of putative neuraminyllactose-binding hemagglutinin homolog from helicobacter pylori
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
206
structure length
187
Chain Sequence
VELHFHYPIKGKQEPKNSHLVVLIEPKIEINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQFKDASEIPQDIKEKALLVLRMDGNVAILEDIVEESDALSEEKVIDMSSGYLNLNFVEPKSEDIIHSFGIDVSKIKAVIERVKETDHDQAIRKIMNQAYHKVMVHITKELSKKHMEHYEKVSSEM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Putative neuraminyllactose-binding hemagglutinin homolog
publication title Crystal structure of putative neuraminyllactose-binding hemagglutinin homolog from Helicobacter pylori.
rcsb
source organism Helicobacter pylori
total genus 57
structure length 187
sequence length 206
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-11-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.180 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Putative neuraminyllactose-binding hemagglutinin homolog like domain 3bghA01
2I9IA 3BGHA
chains in the Genus database with same CATH superfamily
2UXCE 2EOYA 2EMBA 2M1SA 5A6AA 1YYOA 4FK5C 3C4BA 5FLXC 2V83A 4LFCE 2EMZA 4LU9A 2LUQA 1DQ3A 2KOUA 1YYKA 1A1IA 2LT7A 2LMZA 2LCEA 2EPLX 2ENHA 2WZOA 4O43A 4L5NC 2VQFE 5AE2A 3FIGA 4DR5E 4GZNC 4BBYA 2WCC3 5KL6A 2EQ3A 1XMOE 2UXDE 4X9JA 3AV0A 4R2SA 2L2NA 4F9CB 2YZTA 4BC7A 4B3SE 2EPRA 2LJUA 3JTZA 2WBSA 3EPKA 1IMUA 1ZU1A 2EMXA 2RSIA 2YRKA 1A1HA 2I13A 4LF4E 1A1LA 2HHHE 2JWOA 3OTOE 2JPAA 2EM5A 2EM6A 2EOIA 4ZYEA 4ZYDA 2NABA 2EL5A 4JYAE 1NEIA 4R2PA 2UUAE 3AUZA 5LL6R 2F8BA 1MGTA 2EL6A 2YPNA 4KHPE 4IS1C 4DV7E 1DI2A 4F2JC 1X6EA 2RS7A 4HTGA 3LLHA 5LMUE 2EPZA 1N3GA 1ZBTA 4OX9E 2H36X 4DR1E 1LLMC 4B3TE 3F6HA 1T38A 1HNWE 1IBKE 2EN3A 4ZYHA 1P47A 3VYXA 3BBGA 4B3RE 1EKZA 4M0VA 4X65E 3C6KA 2D9HA 4BC9A 2V89A 1WHQA 2V87A 5A6BD 2CSHA 2JXPA 2YTGA 2K4VA 5A2QC 1X3CA 2MKDA 3EPJA 2E1MA 2L2MA 4BMJA 5CFFE 2R76A 1N36E 3UK3C 2L3JA 2YWQA 2YTPA 4MLQA 1T39A 2EQ0A 2ADRA 4KWYA 2M4IA 2EM7A 2EP3A 4TUGA 4X66E 2EL4A 2L6MA 2V8QB 5T6JA 2EJ4A 1SR9A 4B3ME 4HEIA 2EMCA 1HNXE 3M99B 2RTXA 1XMQE 2ELZA 2LTSA 4R2EA 2EM4A 2YTJA 1A1FA 2DMIA 1F2IG 5TSEA 1FJGE 4JI0E 3MSWA 2JOBA 4LF9E 1RMDA 3ECRA 2DSYA 1DGCA 2EMIA 1FKAE 1B69A 5A6KA 3THOB 2LTRA 4TUIA 1PJSA 1EH8A 2GLIA 5A6BA 2RSMA 2EMAA 2EM9A 1GZ6A 4K0KE 1YFHA 4DR7E 2YU5A 4O4KA 2EPKX 4BHBA 1HR0E 4DV5E 4F54A 1JK2A 2JP9A 1SFEA 5A6JA 5IWAE 1X5WA 4X8WA 1WXRA 5KL3A 1TF6A 1N33E 5DNYA 4DR3E 1MEYC 2V88A 1GTKA 2MDGA 5LMNE 2WBUA 3EPHA 2EPAA 2F4VE 5KL5A 4AQYE 1X49A 4MLVA 3ADJA 2VF1A 5AE3A 1BBGA 1O0WA 1TN9A 2WBTA 4R03A 4JI7E 2KHXA 2EM0A 1KYQA 1T4OA 2EOZA 2EMKA 5LLQA 2YRHA 2B9DA 1L4SA 1YPNA 1X6FA 3OMLA 5IV8B 4WYQB 2M9AA 1WJPA 4LF5E 2EM2A 2VE7C 2KONA 4R2AA 4DV1E 5KL2A 2PRTA 1UN6B 1BBOA 2YSOA 3HQ1A 3ZOQB 1YUIA 1RQ0A 1TF3A 5IXMB 2B7TA 2N3HA 4RH8A 3BIDA 4DV4E 3DJWA 2EPOA 3IWDA 2EMLA 4N4RB 1WRJA 2L3CA 3KZZA 4GKJE 2EPCA 2RPCA 4WX9A 2FV4B 2L8TA 3K6QA 1X47A 2FTXB 4YHHE 2R1FA 3P1XA 3VK6A 4F6MA 2A25A 2EN7A 4BS9A 2DIXA 1EH6A 2EOEA 3C4TA 2UUBE 4R2CA 5F3WA 1IBLE 1A1KA 1ZR9A 2J7JA 4DKKA 2GPIA 2JVAA 2YT4A 2DGCA 2LVHA 2I9IA 4LFAE 4JI4E 2MKNA 3IWBA 3ADIA 1A1GA 4I8OA 4LF8E 2UUCE 4DR6E 4R2DA 1ZBQA 2JOXA 1UBDC 4NHRA 4WXCA 2EE8A 1YUJA 1T4NA 2M7QA 4F9AB 2CT1A 1Z1BA 1PKPA 4IJDA 4R8OA 1RC7A 4JI5E 4ZYGA 4L8NA 2EMFA 2EM8A 5AASA 1YSAC 1UHZA 2LE2A 2EOMA 3QG5C 2EORA 2YRMA 2EOXA 4M2ZA 1YYWA 1X6HA 3JU0A 2VQEE 2EOHA 4OOGC 4R2QA 2N3GA 1HNZE 2MDRA 1XNQE 4GKKE 4JI1E 2JR1A 3DF6A 4NZVA 2YU8A 4X64E 2N8XA 2YTNA 3T1YE 2LRSA 2NUFA 4DV0E 5KL7A 2EPNA 2UXBE 2EN1A 4DV2E 4NXNE 2B7VA 1J26A 2EMWA 4M9VC 3LMLA 3EPLA 4WFTA 5KL4A 2EPMX 1PDAA 4DV3E 5A69A 4Q35B 4P78A 2ELYA 3MHSC 3J80C 2RQLA 2V86A 2IHR1 2EMYA 2FGGA 2YTOA 4WSGA 4WPYA 4LF6E 4F9BB 2LV2A 1N32E 4JV5E 1QNTA 2K7IA 2CTDA 2EMHA 3KWRA 4DUZE 3JAMC 1KJKA 1A1JA 2EN8A 1IBME 2EN2A 2NA2A 2L33A 2YTQA 2ODRC 1YZ9A 4LFBE 2NUGA 3KZYA 4O24A 5IT9C 3T1HE 1J5EE 1JK1A 3EQ1A 2EN6A 2BBGA 1X48A 2JYAA 5AC4A 5AE1A 2L2KB 3HPZA 3HXLA 4O5GA 2ODRD 2YTDA 4P7DA 1STUA 3J81C 2EPPA 2CPNA 3IWCA 2LO3A 1AAYA 2EWLA 4NXME 4F6NA 4X62E 2YTEA 3VYYA 1I94E 3HPSA 2JY9A 4DMIA 4R2RA 2EM3A 3BF2A 2MC6A 3ADGA 2DLKA 4DR2E 3J7AG 2GHFA 1GQEA 2YSPA 2EMGA 2E5LE 2DB2A 4JI6E 2ENCA 2E72A 4JI8E 3H09A 1IQSA 5BR8E 1IQOA 2ENAA 2EOJA 1PJQA 4DR4E 2EOFA 4LF7E 4BCAA 4Q28A 1ZAAC 4RHBB 2YTFA 3RMPA 2RS6A 2EQ1A 2HJJA 1UILA 2DRPA 2UU9E 2MC5A 2Q8UA 1WHNA 4WSPA 3VHTB 1QU6A 1NCSA 2LBSB 3HTXA 5ADZA 3J7Yp 2G7HA 5AC5A 1N34E 2B3TB 2NUEA 2ZM6E 2EZ6A 4DUYE 1G2FC 2DMYA 4M30A 2HC5A 2EPXA 4JI3E 2YTIA 2HGHA 3MHHC 3ADLA 1G2DC 3L00A 2LJHA 2DLQA 4DV6E 2BB8A 4KZSA 4J8ZA 4GEQB 4JI2E 1T4LB 4LTYA 1BB8A 2EPUA 3BGHA 4BHCA 3TQMA 3C6MA 2VRDA 2EN4A 3F6GA 4WXDA 2L92A 2LUPB 2V85A 3THNA 1PJTA 2EOQA 2EOSA 1AH5A 4YY3E 1EH7A 1XNRE 2EOOA
chains in the Genus database with same CATH topology
2I9IA 3BGHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I9I A;  3BGH A; 
#chains in the Genus database with same CATH topology
 2UXC E;  2EOY A;  2EMB A;  2M1S A;  5A6A A;  1YYO A;  4FK5 C;  3C4B A;  5FLX C;  2V83 A;  4LFC E;  2EMZ A;  4LU9 A;  2LUQ A;  1DQ3 A;  2KOU A;  1YYK A;  1A1I A;  2LT7 A;  2LMZ A;  2LCE A;  2EPL X;  2ENH A;  2WZO A;  4O43 A;  4L5N C;  2VQF E;  5AE2 A;  3FIG A;  4DR5 E;  4GZN C;  4BBY A;  2WCC 3;  5KL6 A;  2EQ3 A;  1XMO E;  2UXD E;  4X9J A;  3AV0 A;  4R2S A;  2L2N A;  4F9C B;  2YZT A;  4BC7 A;  4B3S E;  2EPR A;  2LJU A;  3JTZ A;  2WBS A;  3EPK A;  1IMU A;  1ZU1 A;  2EMX A;  2RSI A;  2YRK A;  1A1H A;  2I13 A;  4LF4 E;  1A1L A;  2HHH E;  2JWO A;  3OTO E;  2JPA A;  2EM5 A;  2EM6 A;  2EOI A;  4ZYE A;  4ZYD A;  2NAB A;  2EL5 A;  4JYA E;  1NEI A;  4R2P A;  2UUA E;  3AUZ A;  5LL6 R;  2F8B A;  1MGT A;  2EL6 A;  2YPN A;  4KHP E;  4IS1 C;  4DV7 E;  1DI2 A;  4F2J C;  1X6E A;  2RS7 A;  4HTG A;  3LLH A;  5LMU E;  2EPZ A;  1N3G A;  1ZBT A;  4OX9 E;  2H36 X;  4DR1 E;  1LLM C;  4B3T E;  3F6H A;  1T38 A;  1HNW E;  1IBK E;  2EN3 A;  4ZYH A;  1P47 A;  3VYX A;  3BBG A;  4B3R E;  1EKZ A;  4M0V A;  4X65 E;  3C6K A;  2D9H A;  4BC9 A;  2V89 A;  1WHQ A;  2V87 A;  5A6B D;  2CSH A;  2JXP A;  2YTG A;  2K4V A;  5A2Q C;  1X3C A;  2MKD A;  3EPJ A;  2E1M A;  2L2M A;  4BMJ A;  5CFF E;  2R76 A;  1N36 E;  3UK3 C;  2L3J A;  2YWQ A;  2YTP A;  4MLQ A;  1T39 A;  2EQ0 A;  2ADR A;  4KWY A;  2M4I A;  2EM7 A;  2EP3 A;  4TUG A;  4X66 E;  2EL4 A;  2L6M A;  2V8Q B;  5T6J A;  2EJ4 A;  1SR9 A;  4B3M E;  4HEI A;  2EMC A;  1HNX E;  3M99 B;  2RTX A;  1XMQ E;  2ELZ A;  2LTS A;  4R2E A;  2EM4 A;  2YTJ A;  1A1F A;  2DMI A;  1F2I G;  5TSE A;  1FJG E;  4JI0 E;  3MSW A;  2JOB A;  4LF9 E;  1RMD A;  3ECR A;  2DSY A;  1DGC A;  2EMI A;  1FKA E;  1B69 A;  5A6K A;  3THO B;  2LTR A;  4TUI A;  1PJS A;  1EH8 A;  2GLI A;  5A6B A;  2RSM A;  2EMA A;  2EM9 A;  1GZ6 A;  4K0K E;  1YFH A;  4DR7 E;  2YU5 A;  4O4K A;  2EPK X;  4BHB A;  1HR0 E;  4DV5 E;  4F54 A;  1JK2 A;  2JP9 A;  1SFE A;  5A6J A;  5IWA E;  1X5W A;  4X8W A;  1WXR A;  5KL3 A;  1TF6 A;  1N33 E;  5DNY A;  4DR3 E;  1MEY C;  2V88 A;  1GTK A;  2MDG A;  5LMN E;  2WBU A;  3EPH A;  2EPA A;  2F4V E;  5KL5 A;  4AQY E;  1X49 A;  4MLV A;  3ADJ A;  2VF1 A;  5AE3 A;  1BBG A;  1O0W A;  1TN9 A;  2WBT A;  4R03 A;  4JI7 E;  2KHX A;  2EM0 A;  1KYQ A;  1T4O A;  2EOZ A;  2EMK A;  5LLQ A;  2YRH A;  2B9D A;  1L4S A;  1YPN A;  1X6F A;  3OML A;  5IV8 B;  4WYQ B;  2M9A A;  1WJP A;  4LF5 E;  2EM2 A;  2VE7 C;  2KON A;  4R2A A;  4DV1 E;  5KL2 A;  2PRT A;  1UN6 B;  1BBO A;  2YSO A;  3HQ1 A;  3ZOQ B;  1YUI A;  1RQ0 A;  1TF3 A;  5IXM B;  2B7T A;  2N3H A;  4RH8 A;  3BID A;  4DV4 E;  3DJW A;  2EPO A;  3IWD A;  2EML A;  4N4R B;  1WRJ A;  2L3C A;  3KZZ A;  4GKJ E;  2EPC A;  2RPC A;  4WX9 A;  2FV4 B;  2L8T A;  3K6Q A;  1X47 A;  2FTX B;  4YHH E;  2R1F A;  3P1X A;  3VK6 A;  4F6M A;  2A25 A;  2EN7 A;  4BS9 A;  2DIX A;  1EH6 A;  2EOE A;  3C4T A;  2UUB E;  4R2C A;  5F3W A;  1IBL E;  1A1K A;  1ZR9 A;  2J7J A;  4DKK A;  2GPI A;  2JVA A;  2YT4 A;  2DGC A;  2LVH A;  2I9I A;  4LFA E;  4JI4 E;  2MKN A;  3IWB A;  3ADI A;  1A1G A;  4I8O A;  4LF8 E;  2UUC E;  4DR6 E;  4R2D A;  1ZBQ A;  2JOX A;  1UBD C;  4NHR A;  4WXC A;  2EE8 A;  1YUJ A;  1T4N A;  2M7Q A;  4F9A B;  2CT1 A;  1Z1B A;  1PKP A;  4IJD A;  4R8O A;  1RC7 A;  4JI5 E;  4ZYG A;  4L8N A;  2EMF A;  2EM8 A;  5AAS A;  1YSA C;  1UHZ A;  2LE2 A;  2EOM A;  3QG5 C;  2EOR A;  2YRM A;  2EOX A;  4M2Z A;  1YYW A;  1X6H A;  3JU0 A;  2VQE E;  2EOH A;  4OOG C;  4R2Q A;  2N3G A;  1HNZ E;  2MDR A;  1XNQ E;  4GKK E;  4JI1 E;  2JR1 A;  3DF6 A;  4NZV A;  2YU8 A;  4X64 E;  2N8X A;  2YTN A;  3T1Y E;  2LRS A;  2NUF A;  4DV0 E;  5KL7 A;  2EPN A;  2UXB E;  2EN1 A;  4DV2 E;  4NXN E;  2B7V A;  1J26 A;  2EMW A;  4M9V C;  3LML A;  3EPL A;  4WFT A;  5KL4 A;  2EPM X;  1PDA A;  4DV3 E;  5A69 A;  4Q35 B;  4P78 A;  2ELY A;  3MHS C;  3J80 C;  2RQL A;  2V86 A;  2IHR 1;  2EMY A;  2FGG A;  2YTO A;  4WSG A;  4WPY A;  4LF6 E;  4F9B B;  2LV2 A;  1N32 E;  4JV5 E;  1QNT A;  2K7I A;  2CTD A;  2EMH A;  3KWR A;  4DUZ E;  3JAM C;  1KJK A;  1A1J A;  2EN8 A;  1IBM E;  2EN2 A;  2NA2 A;  2L33 A;  2YTQ A;  2ODR C;  1YZ9 A;  4LFB E;  2NUG A;  3KZY A;  4O24 A;  5IT9 C;  3T1H E;  1J5E E;  1JK1 A;  3EQ1 A;  2EN6 A;  2BBG A;  1X48 A;  2JYA A;  5AC4 A;  5AE1 A;  2L2K B;  3HPZ A;  3HXL A;  4O5G A;  2ODR D;  2YTD A;  4P7D A;  1STU A;  3J81 C;  2EPP A;  2CPN A;  3IWC A;  2LO3 A;  1AAY A;  2EWL A;  4NXM E;  4F6N A;  4X62 E;  2YTE A;  3VYY A;  1I94 E;  3HPS A;  2JY9 A;  4DMI A;  4R2R A;  2EM3 A;  3BF2 A;  2MC6 A;  3ADG A;  2DLK A;  4DR2 E;  3J7A G;  2GHF A;  1GQE A;  2YSP A;  2EMG A;  2E5L E;  2DB2 A;  4JI6 E;  2ENC A;  2E72 A;  4JI8 E;  3H09 A;  1IQS A;  5BR8 E;  1IQO A;  2ENA A;  2EOJ A;  1PJQ A;  4DR4 E;  2EOF A;  4LF7 E;  4BCA A;  4Q28 A;  1ZAA C;  4RHB B;  2YTF A;  3RMP A;  2RS6 A;  2EQ1 A;  2HJJ A;  1UIL A;  2DRP A;  2UU9 E;  2MC5 A;  2Q8U A;  1WHN A;  4WSP A;  3VHT B;  1QU6 A;  1NCS A;  2LBS B;  3HTX A;  5ADZ A;  3J7Y p;  2G7H A;  5AC5 A;  1N34 E;  2B3T B;  2NUE A;  2ZM6 E;  2EZ6 A;  4DUY E;  1G2F C;  2DMY A;  4M30 A;  2HC5 A;  2EPX A;  4JI3 E;  2YTI A;  2HGH A;  3MHH C;  3ADL A;  1G2D C;  3L00 A;  2LJH A;  2DLQ A;  4DV6 E;  2BB8 A;  4KZS A;  4J8Z A;  4GEQ B;  4JI2 E;  1T4L B;  4LTY A;  1BB8 A;  2EPU A;  3BGH A;  4BHC A;  3TQM A;  3C6M A;  2VRD A;  2EN4 A;  3F6G A;  4WXD A;  2L92 A;  2LUP B;  2V85 A;  3THN A;  1PJT A;  2EOQ A;  2EOS A;  1AH5 A;  4YY3 E;  1EH7 A;  1XNR E;  2EOO A; 
#chains in the Genus database with same CATH homology
 2I9I A;  3BGH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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