3CF5S

Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
total genus 18
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3cf5S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 3cf5S02
4JYZA 1EUYA 5GADW 1GTSA 3AIIA 2RD2A 4IO9S 5BNZA 1GTRA 4WFAS 1QRSA 4H3SA 3PIOS 4IOCS 5HL7S 5GAEW 4P2BA 3CF5S 5JVHS 1EUQA 3J7ZV 1QRTA 5IZNA 4UY88 4JXXA 5GAGW 5DM7S 2RE8A 1EXDA 2ZJPS 1ZJWA 2ZJQS 2HZ7A 4WFNS 4U67S 2ZJRS 1DFUP 4WF9S 1QRUA 5DM6S 4WFBS 5JVGS 3PIPS 1O0CA 1B75A 4IOAS 1NYLA 4WCES 1QTQA 4JXZA 1D6KA 3DLLS 1FEUA 1O0BA 5GAHW
chains in the Genus database with same CATH superfamily
3GTKC 2RD2A 1GTRA 5IYBC 2O5IA 4H3SA 2VUMC 4IOCS 4A3JC 1TWAC 3W2VB 5GAEW 2NVXC 5JVHS 1EUQA 4XSXA 1Y1WC 3J7ZV 1I6HC 3I4MC 3RZOC 5C44C 3KW2A 4LLGA 5IP7C 3GTGC 3GTLC 4A3EC 1EXDA 2ZJPS 3HOWC 4A93C 1HQMA 3HOVC 5TMFA 3S17C 4WF9S 4A3LC 4YFXA 3HOZC 1NXZA 4ZH4A 3PIPS 1O0CA 4KN7A 4QIWD 4JK1A 2G6GA 4IOAS 1NYLA 4WCES 1VHKA 1QTQA 4AYBD 1D6KA 3GTPC 4X6AC 1FEUA 1O0BA 1BDFA 2KPUA 1IW7A 3HKZD 3S1RC 4OINA 3RZDC 1I3QC 5BNZA 1V6ZA 3GTOC 2A69A 2E2JC 4Y7NC 1R9TC 4LK0A 3S15C 4E8BA 3S1QC 4YFKA 3PO3C 3M3YC 2KXYA 1QRTA 2L3UA 1I6VA 4C3HC 2B63C 4Q5SA 4JXXA 4BBSC 2R93C 1TWHC 4GZYA 2JA8C 4A3DC 1Y1VC 5TMCA 1K83C 4XSZA 2A6EA 4MEXA 2ZJQS 4G7OA 3HOXC 1SMYA 3PO2C 4WFBS 3WODA 4KN4A 5C4JC 3W2WB 1B75A 2L5NA 2Y0SD 2WAQD 3LYWA 2O5JA 3S2DC 3K7AC 5GAHW 4JYZA 1EUYA 4G7ZA 1GTSA 2JA7C 3X1LB 4IO9S 5IYDC 4A3CC 3S2HC 2NWAA 4G7HA 2E2HC 2R92C 2WB1D 5C3EC 2AE0X 4LJZA 4C3IC 5FLMC 5IP9C 4BY1C 3HOYC 1TWCC 4XLPA 5C4XC 5IYCC 4MEYA 4NOIA 5GAGW 3CQZC 5DM7S 2RE8A 2E2IC 2PNWA 1WCMC 3S1NC 1I50C 4BBRC 1VHYA 4WFNS 2EGVA 2ZJRS 5D4DA 3GTQC 4YG2A 3DXJA 1QRUA 3EQLA 4OIRA 3GTJC 3I4NC 4A3GC 4OIOA 4V194 2JA5C 1YNNA 1Z85A 2EGWA 2KQ1A 2YU9C 4JXZA 4OIPA 2PJJA 3DLLS 3H3VD 3M4OC 5GADW 4LK1A 3AIIA 1ZYRA 2PICA 4C3JC 4J3CA 4WFAS 1QRSA 2PPBA 2R7ZC 4QJVA 3PIOS 4A3IC 5HL7S 4H4KA 2PA8D 4BXXC 2CW0A 3CF5S 4P2BA 4KMUA 3S14C 2NVQC 4A3FC 3HOUC 2JA6C 3CZBA 2G5DA 4C2MC 5IZNA 4L69A 4UY88 4MQ9A 3FKIC 4Y52C 1SFOC 5HQHA 3GTMC 3S16C 3S1MC 2PMZD 4A3KC 2BE5A 2NVYC 3H0GC 1UDXA 1ZJWA 4BY7C 2Z0YA 2HZ7A 4U67S 4A3MC 1DFUP 2PI8A 1TWGC 4XLNA 5DM6S 1TWFC 2A6HA 5JVGS 2A68A 4OIQA 1YNJA 4YFNA 2GAEA 2NVTC 4A3BC 4Q4ZA 2CX8A
chains in the Genus database with same CATH topology
4JYZA 1EUYA 5GADW 1GTSA 3AIIA 2RD2A 4IO9S 3X1LB 5BNZA 1GTRA 4WFAS 1QRSA 4H3SA 3PIOS 4IOCS 5HL7S 4H4KA 3W2VB 5GAEW 4P2BA 3CF5S 5JVHS 1EUQA 3J7ZV 1QRTA 5IZNA 4UY88 4JXXA 5GAGW 5DM7S 2RE8A 1EXDA 2ZJPS 1UDXA 1ZJWA 2ZJQS 2HZ7A 4WFNS 4U67S 2ZJRS 1DFUP 4WF9S 1QRUA 5DM6S 4WFBS 5JVGS 4V194 3PIPS 1O0CA 3W2WB 1B75A 4IOAS 1NYLA 4WCES 1QTQA 4JXZA 1D6KA 3DLLS 1FEUA 1O0BA 5GAHW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JYZ A;  1EUY A;  5GAD W;  1GTS A;  3AII A;  2RD2 A;  4IO9 S;  5BNZ A;  1GTR A;  4WFA S;  1QRS A;  4H3S A;  3PIO S;  4IOC S;  5HL7 S;  5GAE W;  4P2B A;  3CF5 S;  5JVH S;  1EUQ A;  3J7Z V;  1QRT A;  5IZN A;  4UY8 8;  4JXX A;  5GAG W;  5DM7 S;  2RE8 A;  1EXD A;  2ZJP S;  1ZJW A;  2ZJQ S;  2HZ7 A;  4WFN S;  4U67 S;  2ZJR S;  1DFU P;  4WF9 S;  1QRU A;  5DM6 S;  4WFB S;  5JVG S;  3PIP S;  1O0C A;  1B75 A;  4IOA S;  1NYL A;  4WCE S;  1QTQ A;  4JXZ A;  1D6K A;  3DLL S;  1FEU A;  1O0B A;  5GAH W; 
#chains in the Genus database with same CATH topology
 3GTK C;  2RD2 A;  1GTR A;  5IYB C;  2O5I A;  4H3S A;  2VUM C;  4IOC S;  4A3J C;  1TWA C;  3W2V B;  5GAE W;  2NVX C;  5JVH S;  1EUQ A;  4XSX A;  1Y1W C;  3J7Z V;  1I6H C;  3I4M C;  3RZO C;  5C44 C;  3KW2 A;  4LLG A;  5IP7 C;  3GTG C;  3GTL C;  4A3E C;  1EXD A;  2ZJP S;  3HOW C;  4A93 C;  1HQM A;  3HOV C;  5TMF A;  3S17 C;  4WF9 S;  4A3L C;  4YFX A;  3HOZ C;  1NXZ A;  4ZH4 A;  3PIP S;  1O0C A;  4KN7 A;  4QIW D;  4JK1 A;  2G6G A;  4IOA S;  1NYL A;  4WCE S;  1VHK A;  1QTQ A;  4AYB D;  1D6K A;  3GTP C;  4X6A C;  1FEU A;  1O0B A;  1BDF A;  2KPU A;  1IW7 A;  3HKZ D;  3S1R C;  4OIN A;  3RZD C;  1I3Q C;  5BNZ A;  1V6Z A;  3GTO C;  2A69 A;  2E2J C;  4Y7N C;  1R9T C;  4LK0 A;  3S15 C;  4E8B A;  3S1Q C;  4YFK A;  3PO3 C;  3M3Y C;  2KXY A;  1QRT A;  2L3U A;  1I6V A;  4C3H C;  2B63 C;  4Q5S A;  4JXX A;  4BBS C;  2R93 C;  1TWH C;  4GZY A;  2JA8 C;  4A3D C;  1Y1V C;  5TMC A;  1K83 C;  4XSZ A;  2A6E A;  4MEX A;  2ZJQ S;  4G7O A;  3HOX C;  1SMY A;  3PO2 C;  4WFB S;  3WOD A;  4KN4 A;  5C4J C;  3W2W B;  1B75 A;  2L5N A;  2Y0S D;  2WAQ D;  3LYW A;  2O5J A;  3S2D C;  3K7A C;  5GAH W;  4JYZ A;  1EUY A;  4G7Z A;  1GTS A;  2JA7 C;  3X1L B;  4IO9 S;  5IYD C;  4A3C C;  3S2H C;  2NWA A;  4G7H A;  2E2H C;  2R92 C;  2WB1 D;  5C3E C;  2AE0 X;  4LJZ A;  4C3I C;  5FLM C;  5IP9 C;  4BY1 C;  3HOY C;  1TWC C;  4XLP A;  5C4X C;  5IYC C;  4MEY A;  4NOI A;  5GAG W;  3CQZ C;  5DM7 S;  2RE8 A;  2E2I C;  2PNW A;  1WCM C;  3S1N C;  1I50 C;  4BBR C;  1VHY A;  4WFN S;  2EGV A;  2ZJR S;  5D4D A;  3GTQ C;  4YG2 A;  3DXJ A;  1QRU A;  3EQL A;  4OIR A;  3GTJ C;  3I4N C;  4A3G C;  4OIO A;  4V19 4;  2JA5 C;  1YNN A;  1Z85 A;  2EGW A;  2KQ1 A;  2YU9 C;  4JXZ A;  4OIP A;  2PJJ A;  3DLL S;  3H3V D;  3M4O C;  5GAD W;  4LK1 A;  3AII A;  1ZYR A;  2PIC A;  4C3J C;  4J3C A;  4WFA S;  1QRS A;  2PPB A;  2R7Z C;  4QJV A;  3PIO S;  4A3I C;  5HL7 S;  4H4K A;  2PA8 D;  4BXX C;  2CW0 A;  3CF5 S;  4P2B A;  4KMU A;  3S14 C;  2NVQ C;  4A3F C;  3HOU C;  2JA6 C;  3CZB A;  2G5D A;  4C2M C;  5IZN A;  4L69 A;  4UY8 8;  4MQ9 A;  3FKI C;  4Y52 C;  1SFO C;  5HQH A;  3GTM C;  3S16 C;  3S1M C;  2PMZ D;  4A3K C;  2BE5 A;  2NVY C;  3H0G C;  1UDX A;  1ZJW A;  4BY7 C;  2Z0Y A;  2HZ7 A;  4U67 S;  4A3M C;  1DFU P;  2PI8 A;  1TWG C;  4XLN A;  5DM6 S;  1TWF C;  2A6H A;  5JVG S;  2A68 A;  4OIQ A;  1YNJ A;  4YFN A;  2GAE A;  2NVT C;  4A3B C;  4Q4Z A;  2CX8 A; 
#chains in the Genus database with same CATH homology
 4JYZ A;  1EUY A;  5GAD W;  1GTS A;  3AII A;  2RD2 A;  4IO9 S;  3X1L B;  5BNZ A;  1GTR A;  4WFA S;  1QRS A;  4H3S A;  3PIO S;  4IOC S;  5HL7 S;  4H4K A;  3W2V B;  5GAE W;  4P2B A;  3CF5 S;  5JVH S;  1EUQ A;  3J7Z V;  1QRT A;  5IZN A;  4UY8 8;  4JXX A;  5GAG W;  5DM7 S;  2RE8 A;  1EXD A;  2ZJP S;  1UDX A;  1ZJW A;  2ZJQ S;  2HZ7 A;  4WFN S;  4U67 S;  2ZJR S;  1DFU P;  4WF9 S;  1QRU A;  5DM6 S;  4WFB S;  5JVG S;  4V19 4;  3PIP S;  1O0C A;  3W2W B;  1B75 A;  4IOA S;  1NYL A;  4WCE S;  1QTQ A;  4JXZ A;  1D6K A;  3DLL S;  1FEU A;  1O0B A;  5GAH W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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