3CI0K

The crystal structure of the gspk-gspi-gspj complex from enterotoxigenic escherichia coli type 2 secretion system
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
287
structure length
280
Chain Sequence
GRTRSQQEYQQALWYSASAESLALSALSLSLKNEKRVHLEQPWASGPRFFPLPQGQIAVTLRDAQACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQININTLDVTQSVILEALFDARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Pseudopilin GspI
publication title Structure of the GspK-GspI-GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system.
pubmed doi rcsb
source organism Escherichia coli
total genus 83
structure length 280
sequence length 287
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF03934 T2SSK Type II secretion system (T2SS), protein K
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K02
1.10.40.60 Mainly Alpha Orthogonal Bundle Ribonucleotide Reductase Protein R1; domain 1 EpsJ-like 3ci0K03
3.30.1300.30 Alpha Beta 2-Layer Sandwich Pantoate--beta-alanine Ligase; Chain: A,domain 2 GSPII I/J protein-like 3ci0K01
2GR8A 2LMEA 3CI0I 2RETA 5BW0B 2GR7A 3CFIA 3EMOA 3CI0K
chains in the Genus database with same CATH superfamily
4L6AA 3F4SA 3GZHA 4YIHA 2JAUA 2A7XA 3AG6A 4YIKA 1IW7D 1UFVA 2RETA 1U15A 5F92A 3CFFL 1Z4LA 4L57A 1U0LA 5D6BA 3BHGA 3IUBA 4HGVA 3QTTA 5HG0A 3OCEA 2A54A 2IECA 2EJCA 4DE5A 1HY0A 2PTQA 3IMGA 3NO9A 2A50A 2JARA 3INNA 2A88A 1N2BA 2JAOA 2A84A 1TJVA 1K7WA 2HVGA 3COWA 4DDMA 1FUPA 3CFAL 4NLEA 1Q5NA 2PTSA 3C8TA 3N8HA 1IHOA 2G5ZA 1VDKA 4NSLA 5F91A 3F4TA 1FURA 3COYA 3IVCA 1N2JA 1AUWA 2GW4A 4MULA 2PTRA 1K62A 4ADLA 3E04A 4BHRA 4APBA 4MUKA 1Z4PX 1MH9A 5EXCA 4EEIA 1N2GA 1N2IA 3OCFA 1N2EA 4L6CA 1N2OA 1TJUA 3IOCA 3R6VA 3CI0I 2JAWA 4EFCA 4MUEA 3IOEA 1C3UA 3R6QA 2X3FA 1N2HA 4E88A 1Z4JA 4MUMA 2I52A 3COZA 3RD8A 4MUFA 2RCNA 2QGAB 3COVA 3LE8A 2D27A 3MXTA 3UY4A 1FUQA 4DDHA 3CFIA 5G2FA 1T9HA 1V8FA 1MOPA 3IOBA 4G5FA 3UA0A 5BW0B 3TV2A 3HL6A 2X75A 4MWOA 1Q91A 3IMEA 2LMEA 1HY1A 4IQJM 2D28C 1Z4QA 2A52A 3EMOA 2FUSA 2A56A 3IUEA 1DOFA 4MQ6A 4EF6A 4IXJA 3IODA 2OGFA 3IVGA 1C3CA 3CFHL 4NFLA 1J3UA 3IMCA 5KWVA 5HW2A 3RRPA 3LF4A 2GR8A 1I0AA 4DDKA 2G2SA 1YFEA 2PFMA 3U19A 1XWOA 2G3DA 3CI0K 1TJ7A 4APAA 1U16A 2GR7A 1Q92A 1YFMA 4MUIA 1Z4KA 4MUNA 2G16A 1FUOA 1TJWA 3F4RA 3MUEA 3AG5A 4FZJA 1Z4MA 4EFKA 3U13A 4ADMA 3GTDA 2A53A 1KQ7A 1JSWA 4MX2A 4G5YA 1DCNA 4MUGA 2A86A 3IVXA 1RE5A 2I7DA 3UK2A 3QBPA 3ISJA 3Q12A 3BWVA 3Q10A 1Z4IA 2E9FA 4MUHA 2YV5A 4MUJA
chains in the Genus database with same CATH topology
2GR8A 2LMEA 3CI0I 2RETA 5BW0B 2GR7A 3CFIA 3CI0J 3EMOA 3CI0K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GR8 A;  2LME A;  3CI0 I;  2RET A;  5BW0 B;  2GR7 A;  3CFI A;  3EMO A;  3CI0 K; 
#chains in the Genus database with same CATH topology
 4L6A A;  3F4S A;  3GZH A;  4YIH A;  2JAU A;  2A7X A;  3AG6 A;  4YIK A;  1IW7 D;  1UFV A;  2RET A;  1U15 A;  5F92 A;  3CFF L;  1Z4L A;  4L57 A;  1U0L A;  5D6B A;  3BHG A;  3IUB A;  4HGV A;  3QTT A;  5HG0 A;  3OCE A;  2A54 A;  2IEC A;  2EJC A;  4DE5 A;  1HY0 A;  2PTQ A;  3IMG A;  3NO9 A;  2A50 A;  2JAR A;  3INN A;  2A88 A;  1N2B A;  2JAO A;  2A84 A;  1TJV A;  1K7W A;  2HVG A;  3COW A;  4DDM A;  1FUP A;  3CFA L;  4NLE A;  1Q5N A;  2PTS A;  3C8T A;  3N8H A;  1IHO A;  2G5Z A;  1VDK A;  4NSL A;  5F91 A;  3F4T A;  1FUR A;  3COY A;  3IVC A;  1N2J A;  1AUW A;  2GW4 A;  4MUL A;  2PTR A;  1K62 A;  4ADL A;  3E04 A;  4BHR A;  4APB A;  4MUK A;  1Z4P X;  1MH9 A;  5EXC A;  4EEI A;  1N2G A;  1N2I A;  3OCF A;  1N2E A;  4L6C A;  1N2O A;  1TJU A;  3IOC A;  3R6V A;  3CI0 I;  2JAW A;  4EFC A;  4MUE A;  3IOE A;  1C3U A;  3R6Q A;  2X3F A;  1N2H A;  4E88 A;  1Z4J A;  4MUM A;  2I52 A;  3COZ A;  3RD8 A;  4MUF A;  2RCN A;  2QGA B;  3COV A;  3LE8 A;  2D27 A;  3MXT A;  3UY4 A;  1FUQ A;  4DDH A;  3CFI A;  5G2F A;  1T9H A;  1V8F A;  1MOP A;  3IOB A;  4G5F A;  3UA0 A;  5BW0 B;  3TV2 A;  3HL6 A;  2X75 A;  4MWO A;  1Q91 A;  3IME A;  2LME A;  1HY1 A;  4IQJ M;  2D28 C;  1Z4Q A;  2A52 A;  3EMO A;  2FUS A;  2A56 A;  3IUE A;  1DOF A;  4MQ6 A;  4EF6 A;  4IXJ A;  3IOD A;  2OGF A;  3IVG A;  1C3C A;  3CFH L;  4NFL A;  1J3U A;  3IMC A;  5KWV A;  5HW2 A;  3RRP A;  3LF4 A;  2GR8 A;  1I0A A;  4DDK A;  2G2S A;  1YFE A;  2PFM A;  3U19 A;  1XWO A;  2G3D A;  3CI0 K;  1TJ7 A;  4APA A;  1U16 A;  2GR7 A;  1Q92 A;  1YFM A;  4MUI A;  1Z4K A;  4MUN A;  2G16 A;  1FUO A;  1TJW A;  3F4R A;  3MUE A;  3AG5 A;  4FZJ A;  1Z4M A;  4EFK A;  3U13 A;  4ADM A;  3GTD A;  2A53 A;  1KQ7 A;  1JSW A;  4MX2 A;  4G5Y A;  1DCN A;  4MUG A;  2A86 A;  3IVX A;  1RE5 A;  2I7D A;  3UK2 A;  3QBP A;  3ISJ A;  3Q12 A;  3BWV A;  3Q10 A;  1Z4I A;  2E9F A;  4MUH A;  2YV5 A;  4MUJ A; 
#chains in the Genus database with same CATH homology
 2GR8 A;  2LME A;  3CI0 I;  2RET A;  5BW0 B;  2GR7 A;  3CFI A;  3CI0 J;  3EMO A;  3CI0 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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