3CJBG

Actin dimer cross-linked by v. cholerae martx toxin and complexed with gelsolin-segment 1
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
125
structure length
125
Chain Sequence
MVVEHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin, alpha skeletal muscle
publication title Connecting actin monomers by iso-peptide bond is a toxicity mechanism of the Vibrio cholerae MARTX toxin.
pubmed doi rcsb
source organism Homo sapiens
total genus 36
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2008-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3cjbG00
1SVYA 5A1MA 4JD2H 3EH2A 1P8XA 1T3YA 2LJ8A 2W0IA 1C0FS 3FFKA 5KYNA 5KYWA 3A5MS 4BEX1 5FAEA 1MDUA 3EFOA 3EG9B 3EH1A 1VKKA 3L50A 5KYXB 5KYYB 1C0GS 2NUTB 1D0NA 4KEFA 2NUPB 1AK6A 1NLVG 3A5NS 1QPVA 1PCXA 1YAGG 2I2QA 1WNJA 1J72A 4Z94G 2FH2A 3CI5G 1COFA 3EG9A 3FG6A 2FF3A 4CBUG 3EGXB 1VFQA 1Q8GA 5KYXA 3DAWB 5IVUA 5KYYA 2NUTA 4S10C 2FH4A 1KCQA 4CBXG 5KYUB 1EQYS 2XF1A 1T44G 2HD7A 2LXXA 3Q2BA 4LIZA 2FH1A 2MOTA 1HQZ1 1NMDG 2QTVA 3EGXA 5L6WC 3A5OS 1P8ZG 1YVNG 1TMWA 3FG7A 3FFNA 1M4JA 4PKGG 5KYUA 4CBWG 1X67A 2VACA 1JHWA 2FH3A 1DEJS 2MV2A 3EGDB 2NUPA 1TVJA 1PD0A 5FAFA 1NPHA 2FGHA 2VILA 1F7SA 1T3XA 2KVKA 5HVKB 1RGIG 3A5LS 1SVQA 4KEEA 3CIPG 3EGDA 2LLFA 2MP4A 1WM4A 1M2VB 2XFAA 4PKHB 2FF6G 1AHQA 1UDMA 1CNUA 2D8BA 2L72A 4KEDA 4PKIG 1V6FA 1CFYA 1ESVS 3CJCG 3TU5B 5KYWB 1M2VA 5HVKD 1H1VG 1D4XG 3EFOB 1AK7A 1T2LA 5DD2A 1SVRA 1WFSA 2VIKA 3CJBG 1NM1G 1M2OA 1PD1A 1Q8XA
chains in the Genus database with same CATH superfamily
1SVYA 5A1MA 4JD2H 3EH2A 1P8XA 1T3YA 2LJ8A 2W0IA 1C0FS 3FFKA 5KYNA 5KYWA 3A5MS 3DA7A 4BEX1 5FAEA 1MDUA 3EFOA 3EG9B 3EH1A 1VKKA 3L50A 5KYXB 5KYYB 1C0GS 2NUTB 1D0NA 4KEFA 2NUPB 1AK6A 1NLVG 3A5NS 1QPVA 1PCXA 1YAGG 2I2QA 1WNJA 1J72A 4Z94G 2FH2A 3CI5G 1COFA 3EG9A 3FG6A 2FF3A 4CBUG 3EGXB 1VFQA 1Q8GA 5KYXA 3DAWB 5IVUA 5KYYA 2NUTA 4S10C 2FH4A 1KCQA 4CBXG 5KYUB 1EQYS 2XF1A 1T44G 2HD7A 2LXXA 3Q2BA 4LIZA 2FH1A 2MOTA 1HQZ1 1NMDG 2QTVA 3EGXA 5L6WC 3A5OS 1P8ZG 1YVNG 1TMWA 3FG7A 3FFNA 1M4JA 4PKGG 5KYUA 4CBWG 1X67A 2VACA 1JHWA 2FH3A 1DEJS 2MV2A 3EGDB 2NUPA 1TVJA 1PD0A 5FAFA 1NPHA 2FGHA 2VILA 1F7SA 1T3XA 2KVKA 5HVKB 1RGIG 3A5LS 1SVQA 4KEEA 3CIPG 3EGDA 2LLFA 2MP4A 1WM4A 1M2VB 2XFAA 4PKHB 2FF6G 1AHQA 1UDMA 1CNUA 2D8BA 2L72A 4KEDA 4PKIG 1V6FA 1CFYA 1ESVS 3CJCG 3TU5B 5KYWB 1M2VA 5HVKD 1H1VG 1D4XG 3EFOB 1AK7A 1T2LA 5DD2A 1SVRA 1WFSA 2VIKA 3CJBG 1NM1G 1M2OA 1PD1A 1Q8XA
chains in the Genus database with same CATH topology
1SVYA 5A1MA 4JD2H 3EH2A 1P8XA 1T3YA 2LJ8A 2W0IA 1C0FS 3FFKA 5KYNA 5KYWA 3A5MS 3DA7A 4BEX1 5FAEA 1MDUA 3EFOA 3EG9B 3EH1A 1VKKA 3L50A 5KYXB 5KYYB 1C0GS 2NUTB 1D0NA 4KEFA 2NUPB 1AK6A 1NLVG 3A5NS 1QPVA 1PCXA 1YAGG 2I2QA 1WNJA 1J72A 4Z94G 2FH2A 3CI5G 1COFA 3EG9A 3FG6A 2FF3A 4CBUG 3EGXB 1VFQA 1Q8GA 5KYXA 3DAWB 5IVUA 5KYYA 2NUTA 4S10C 2FH4A 1KCQA 4CBXG 5KYUB 1EQYS 2XF1A 1T44G 2HD7A 2LXXA 3Q2BA 4LIZA 2FH1A 2MOTA 1HQZ1 1NMDG 2QTVA 3EGXA 5L6WC 3A5OS 1P8ZG 1YVNG 1TMWA 3FG7A 3FFNA 1M4JA 4PKGG 5KYUA 4CBWG 1X67A 2VACA 1JHWA 2FH3A 1DEJS 2MV2A 3EGDB 2NUPA 1TVJA 1PD0A 5FAFA 1NPHA 2FGHA 2VILA 1F7SA 1T3XA 2KVKA 5HVKB 1RGIG 3A5LS 1SVQA 4KEEA 3CIPG 3EGDA 2LLFA 2MP4A 1WM4A 1M2VB 2XFAA 4PKHB 2FF6G 1AHQA 1UDMA 1CNUA 2D8BA 2L72A 4KEDA 4PKIG 1V6FA 1CFYA 1ESVS 3CJCG 3TU5B 5KYWB 1M2VA 5HVKD 1H1VG 1D4XG 3EFOB 1AK7A 1T2LA 5DD2A 1SVRA 1WFSA 2VIKA 3CJBG 1NM1G 1M2OA 1PD1A 1Q8XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SVY A;  5A1M A;  4JD2 H;  3EH2 A;  1P8X A;  1T3Y A;  2LJ8 A;  2W0I A;  1C0F S;  3FFK A;  5KYN A;  5KYW A;  3A5M S;  4BEX 1;  5FAE A;  1MDU A;  3EFO A;  3EG9 B;  3EH1 A;  1VKK A;  3L50 A;  5KYX B;  5KYY B;  1C0G S;  2NUT B;  1D0N A;  4KEF A;  2NUP B;  1AK6 A;  1NLV G;  3A5N S;  1QPV A;  1PCX A;  1YAG G;  2I2Q A;  1WNJ A;  1J72 A;  4Z94 G;  2FH2 A;  3CI5 G;  1COF A;  3EG9 A;  3FG6 A;  2FF3 A;  4CBU G;  3EGX B;  1VFQ A;  1Q8G A;  5KYX A;  3DAW B;  5IVU A;  5KYY A;  2NUT A;  4S10 C;  2FH4 A;  1KCQ A;  4CBX G;  5KYU B;  1EQY S;  2XF1 A;  1T44 G;  2HD7 A;  2LXX A;  3Q2B A;  4LIZ A;  2FH1 A;  2MOT A;  1HQZ 1;  1NMD G;  2QTV A;  3EGX A;  5L6W C;  3A5O S;  1P8Z G;  1YVN G;  1TMW A;  3FG7 A;  3FFN A;  1M4J A;  4PKG G;  5KYU A;  4CBW G;  1X67 A;  2VAC A;  1JHW A;  2FH3 A;  1DEJ S;  2MV2 A;  3EGD B;  2NUP A;  1TVJ A;  1PD0 A;  5FAF A;  1NPH A;  2FGH A;  2VIL A;  1F7S A;  1T3X A;  2KVK A;  5HVK B;  1RGI G;  3A5L S;  1SVQ A;  4KEE A;  3CIP G;  3EGD A;  2LLF A;  2MP4 A;  1WM4 A;  1M2V B;  2XFA A;  4PKH B;  2FF6 G;  1AHQ A;  1UDM A;  1CNU A;  2D8B A;  2L72 A;  4KED A;  4PKI G;  1V6F A;  1CFY A;  1ESV S;  3CJC G;  3TU5 B;  5KYW B;  1M2V A;  5HVK D;  1H1V G;  1D4X G;  3EFO B;  1AK7 A;  1T2L A;  5DD2 A;  1SVR A;  1WFS A;  2VIK A;  3CJB G;  1NM1 G;  1M2O A;  1PD1 A;  1Q8X A; 
#chains in the Genus database with same CATH topology
 1SVY A;  5A1M A;  4JD2 H;  3EH2 A;  1P8X A;  1T3Y A;  2LJ8 A;  2W0I A;  1C0F S;  3FFK A;  5KYN A;  5KYW A;  3A5M S;  3DA7 A;  4BEX 1;  5FAE A;  1MDU A;  3EFO A;  3EG9 B;  3EH1 A;  1VKK A;  3L50 A;  5KYX B;  5KYY B;  1C0G S;  2NUT B;  1D0N A;  4KEF A;  2NUP B;  1AK6 A;  1NLV G;  3A5N S;  1QPV A;  1PCX A;  1YAG G;  2I2Q A;  1WNJ A;  1J72 A;  4Z94 G;  2FH2 A;  3CI5 G;  1COF A;  3EG9 A;  3FG6 A;  2FF3 A;  4CBU G;  3EGX B;  1VFQ A;  1Q8G A;  5KYX A;  3DAW B;  5IVU A;  5KYY A;  2NUT A;  4S10 C;  2FH4 A;  1KCQ A;  4CBX G;  5KYU B;  1EQY S;  2XF1 A;  1T44 G;  2HD7 A;  2LXX A;  3Q2B A;  4LIZ A;  2FH1 A;  2MOT A;  1HQZ 1;  1NMD G;  2QTV A;  3EGX A;  5L6W C;  3A5O S;  1P8Z G;  1YVN G;  1TMW A;  3FG7 A;  3FFN A;  1M4J A;  4PKG G;  5KYU A;  4CBW G;  1X67 A;  2VAC A;  1JHW A;  2FH3 A;  1DEJ S;  2MV2 A;  3EGD B;  2NUP A;  1TVJ A;  1PD0 A;  5FAF A;  1NPH A;  2FGH A;  2VIL A;  1F7S A;  1T3X A;  2KVK A;  5HVK B;  1RGI G;  3A5L S;  1SVQ A;  4KEE A;  3CIP G;  3EGD A;  2LLF A;  2MP4 A;  1WM4 A;  1M2V B;  2XFA A;  4PKH B;  2FF6 G;  1AHQ A;  1UDM A;  1CNU A;  2D8B A;  2L72 A;  4KED A;  4PKI G;  1V6F A;  1CFY A;  1ESV S;  3CJC G;  3TU5 B;  5KYW B;  1M2V A;  5HVK D;  1H1V G;  1D4X G;  3EFO B;  1AK7 A;  1T2L A;  5DD2 A;  1SVR A;  1WFS A;  2VIK A;  3CJB G;  1NM1 G;  1M2O A;  1PD1 A;  1Q8X A; 
#chains in the Genus database with same CATH homology
 1SVY A;  5A1M A;  4JD2 H;  3EH2 A;  1P8X A;  1T3Y A;  2LJ8 A;  2W0I A;  1C0F S;  3FFK A;  5KYN A;  5KYW A;  3A5M S;  3DA7 A;  4BEX 1;  5FAE A;  1MDU A;  3EFO A;  3EG9 B;  3EH1 A;  1VKK A;  3L50 A;  5KYX B;  5KYY B;  1C0G S;  2NUT B;  1D0N A;  4KEF A;  2NUP B;  1AK6 A;  1NLV G;  3A5N S;  1QPV A;  1PCX A;  1YAG G;  2I2Q A;  1WNJ A;  1J72 A;  4Z94 G;  2FH2 A;  3CI5 G;  1COF A;  3EG9 A;  3FG6 A;  2FF3 A;  4CBU G;  3EGX B;  1VFQ A;  1Q8G A;  5KYX A;  3DAW B;  5IVU A;  5KYY A;  2NUT A;  4S10 C;  2FH4 A;  1KCQ A;  4CBX G;  5KYU B;  1EQY S;  2XF1 A;  1T44 G;  2HD7 A;  2LXX A;  3Q2B A;  4LIZ A;  2FH1 A;  2MOT A;  1HQZ 1;  1NMD G;  2QTV A;  3EGX A;  5L6W C;  3A5O S;  1P8Z G;  1YVN G;  1TMW A;  3FG7 A;  3FFN A;  1M4J A;  4PKG G;  5KYU A;  4CBW G;  1X67 A;  2VAC A;  1JHW A;  2FH3 A;  1DEJ S;  2MV2 A;  3EGD B;  2NUP A;  1TVJ A;  1PD0 A;  5FAF A;  1NPH A;  2FGH A;  2VIL A;  1F7S A;  1T3X A;  2KVK A;  5HVK B;  1RGI G;  3A5L S;  1SVQ A;  4KEE A;  3CIP G;  3EGD A;  2LLF A;  2MP4 A;  1WM4 A;  1M2V B;  2XFA A;  4PKH B;  2FF6 G;  1AHQ A;  1UDM A;  1CNU A;  2D8B A;  2L72 A;  4KED A;  4PKI G;  1V6F A;  1CFY A;  1ESV S;  3CJC G;  3TU5 B;  5KYW B;  1M2V A;  5HVK D;  1H1V G;  1D4X G;  3EFO B;  1AK7 A;  1T2L A;  5DD2 A;  1SVR A;  1WFS A;  2VIK A;  3CJB G;  1NM1 G;  1M2O A;  1PD1 A;  1Q8X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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