3DDTA

Crystal structure of the b2 box from murf1 in dimeric state
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
48
structure length
48
Chain Sequence
GAMGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords E3 ubiquitin-protein ligase TRIM63
publication title Structural analysis of B-Box 2 from MuRF1: identification of a novel self-association pattern in a RING-like fold
pubmed doi rcsb
source organism Homo sapiens
total genus 10
structure length 48
sequence length 48
chains with identical sequence B, C
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2008-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00643 zf-B_box B-box zinc finger
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.200 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3ddtA00
3Q1DA 2DJAA 2YVRA 5K3QA 2JUNA 2D8UA 3DDTA 2CSVA 2EGMA
chains in the Genus database with same CATH superfamily
2QJ0A 2BAYA 4PTBA 2DJAA 2H0DB 2VJEA 3ZVYA 2E61A 4LKAA 2KKXA 3LQIA 3ZNIA 3O70A 2FFWA 2CKLB 2LV9A 4CA1A 4R8PK 4I7DA 2E6RA 2XOCA 4QQ4A 2G45A 3FEHA 1T1HA 3RPGC 3FJUB 3O47A 4LADB 2Y43A 2B0OE 4B86C 2KE1A 3H7HA 4TKPB 2YT5A 2YQMA 2CRRA 5SVIB 2EODA 3O33A 2YHOA 4A0CD 3SOXA 1WILA 4Q6FA 3SUBA 5TRBA 5TDWA 3I2DA 2CSYA 4OGEA 5KH9A 2VJEB 1JM7B 3GL6A 2P57A 2CRWA 2LQ6A 4V3KC 3ZVZB 4O62A 4YBMA 1WGMA 5LKUA 5TABA 1VD4A 3M63A 3LVRE 3O7AA 2XP0A 1WEOA 1MBMA 4W4UA 1Z6UA 5FERA 2K4DA 3M62A 1CHCA 3LQJA 3JUEA 2ZETC 3O37A 4UP0A 2MA6A 3PURA 2G6QA 2RR4A 3DQVR 4OGCA 1HYJA 5LKTA 4YATA 2YW8A 2KKYA 1FP0A 1X4IA 4XI1A 1MM2A 5FB1A 1WEQA 4GNDA 3RTRB 2JMIA 2XB1A 2L43A 2OXQC 3GV4A 3PLWA 2E6SA 3RPGB 4Z0RA 4AUQB 2YU4A 3LJUX 2FD4A 3T9KA 2NAAA 1WE9A 3ZPV1 1Z2QA 3EB6A 5DINA 2KGGA 3ZYQA 2LGKA 5G04B 3N9OA 1G25A 3KV5A 2VPBA 4QF2A 4A49A 2MIQA 4ZUXU 4AP4A 1IYMA 3O35A 3ASLA 4GB0A 2ECVA 4FJCA 4R2YA 2EXUA 2ECTA 2EGPA 4L7XA 4YBSA 4ZDTA 2LN0A 2VNFA 2KWOA 2YHNA 1WEPA 4B7YC 1ZBDB 5TBNA 1WEWA 5B79A 5I3LA 2EA6A 5C13A 2ECGA 3N9NA 3QZVA 2PNXA 2RSDA 3MHHA 2LGLA 2HYED 1WEEA 3DDTA 1X4UA 2L5UA 3LQHA 5SVXA 3M99A 2MNYA 3MDBC 2M85A 3L1XA 1LDJB 2MKEA 4YADA 2YSJA 3KV6A 2YYRA 3FAOA 1U6GB 3N9QA 2KFTA 2F42A 3U5PA 5EYAF 5LKZA 2ECIA 2MA5A 2LGGA 2M13A 5J3XA 3DPLR 2ECNA 2VPGA 4N4FA 2MNZA 2JM3A 5B8DA 2CONA 2AN6A 2JUNA 2CSVA 1VYXA 4AYCA 5K3QA 4BBQA 3N9PA 4UI9B 4YAXA 5TDRA 2C2LA 1WFKA 2VJFA 2MD7B 2FUIA 2LAUA 2M3HA 5B76A 4FIPA 2VPDA 2XEUA 5D1LB 3C6WA 5G0FA 5FB0A 3HCSA 3ZTGA 3E2DA 2I50A 4N3WA 2DSMA 4NN2A 4X3GA 4LLBA 2K16A 1DVPA 2KU3A 2IDAA 2C2VS 2KWKA 5B78A 2ECJA 4CCGX 4FO9A 5JG6A 2QICA 3V43A 2LXPC 2YURA 4AVXA 1DCQA 4MVTA 4AYCB 4I7CA 2LDRA 3O36A 2YQLA 2PUYA 2CSZA 3Q1DA 4GNGA 4GNEA 4YC9A 1N87A 4Z0OA 5LCWB 2JMJA 4LK9A 2F6JA 2YREA 5H1TA 2FSAA 3HTKC 3FANA 2JRJA 5C11A 3HCUA 2K17A 1F62A 4A4CA 5D1KB 3T6RA 4S3OC 3U5MA 4YBTA 4P5OB 4IC2A 2K1JA 2KGIA 2XOZA 3KQIA 3SOWA 5KH7A 4O64A 2XOYA 1VFYA 2KIZA 4UP5A 5B75A 3EB5A 2VPEA 1FBVA 1HYIA 3N9LA 4IC3A 2L0BA 2Y1NA 4MSXA 4R7EA 2KR4A 5LKXA 2LXHC 3T7LA 4LJNA 2MD8C 1JM7A 2YVRA 2D8UA 5FEYA 2FUUA 3ZPVE 1E4UA 2D8SA 4YABA 2DX8A 5H9MA 1V87A 4FK5A 3SOUA 3O34A 5G05B 2G43A 4WZ0A 5SVYA 1WEMA 2IQJA 4ZQLA 3U5OA 4I7BA 4F1PA 3DWDA 2CT2A 3LRQA 1WENA 3MHSA 1JOCA 1WEVA 2VP7A 3HCTA 2HDPA 1RMDA 1K2FA 1WEUA 3L11A 2YSMA 2MUMA 2KYUA 2KWJA 5H1VA 3VK6A 4S3OB 5KH3A 5AITA 2L75A 2LGVA 2L7PA 4WA6A 4WZ3B 2KREA 2MT5A 4PPEA 2UZGA 2EGMA 3C5KA 3KDEC 4L58A 5AIUA 1MM3A 2ECWA 3PUQA 1WIMA 2H0DA 2M6MA 3FM8C 3LVQE 4GNFA 3L1ZB 3N9MA 1X4JA 3LDYA 4H9DA 4QF3A 1WESA 2OWAA 4BHWA 2CKLA 4C9ZA 1BORA 2L80A 3PHDA 1XWHA 1LDKC 2VJFB 4WZ2A 3FL2A 2M1RA 3IHPA 2JMDA 5D1MB 5H1UA 2KWNA 2QIZA 4V3LC 2LRIC 4A4BA 5DKAA 2YUCA 3U5NA 5B77A 3SHBA 5SVIA 3KNVA 3NG2A 2F6NA 2RI7A 4F52B 3M7KA 2Y1MA 1Z60A
chains in the Genus database with same CATH topology
3O47A 5SVYA 2P57A 2XOZA 3PLWA 2M13A 2DJAA 2LAUA 2YVRA 2XOYA 2B0OE 2IQJA 2E61A 4Z0RA 2D8UA 2CRWA 3DDTA 3LJUX 1DCQA 5SVXA 2EXUA 2FD4A 3T9KA 2KKXA 3H7HA 4F1PA 2RR4A 3FM8C 4OGCA 3LVQE 3MDBC 2CRRA 2JM3A 2CONA 2L7PA 3DWDA 2JUNA 4O62A 5SVIB 2CSVA 2MKEA 3E2DA 3LDYA 4H9DA 3Q1DA 4Z0OA 5SVIA 2FFWA 2KKYA 5K3QA 2OWAA 2YREA 3SUBA 3LVRE 2XP0A 2XOCA 4QQ4A 2EGMA 3FEHA 3M7KA 3KDEC 4OGEA 3FJUB 3JUEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3Q1D A;  2DJA A;  2YVR A;  5K3Q A;  2JUN A;  2D8U A;  3DDT A;  2CSV A;  2EGM A; 
#chains in the Genus database with same CATH topology
 2QJ0 A;  2BAY A;  4PTB A;  2DJA A;  2H0D B;  2VJE A;  3ZVY A;  2E61 A;  4LKA A;  2KKX A;  3LQI A;  3ZNI A;  3O70 A;  2FFW A;  2CKL B;  2LV9 A;  4CA1 A;  4R8P K;  4I7D A;  2E6R A;  2XOC A;  4QQ4 A;  2G45 A;  3FEH A;  1T1H A;  3RPG C;  3FJU B;  3O47 A;  4LAD B;  2Y43 A;  2B0O E;  4B86 C;  2KE1 A;  3H7H A;  4TKP B;  2YT5 A;  2YQM A;  2CRR A;  5SVI B;  2EOD A;  3O33 A;  2YHO A;  4A0C D;  3SOX A;  1WIL A;  4Q6F A;  3SUB A;  5TRB A;  5TDW A;  3I2D A;  2CSY A;  4OGE A;  5KH9 A;  2VJE B;  1JM7 B;  3GL6 A;  2P57 A;  2CRW A;  2LQ6 A;  4V3K C;  3ZVZ B;  4O62 A;  4YBM A;  1WGM A;  5LKU A;  5TAB A;  1VD4 A;  3M63 A;  3LVR E;  3O7A A;  2XP0 A;  1WEO A;  1MBM A;  4W4U A;  1Z6U A;  5FER A;  2K4D A;  3M62 A;  1CHC A;  3LQJ A;  3JUE A;  2ZET C;  3O37 A;  4UP0 A;  2MA6 A;  3PUR A;  2G6Q A;  2RR4 A;  3DQV R;  4OGC A;  1HYJ A;  5LKT A;  4YAT A;  2YW8 A;  2KKY A;  1FP0 A;  1X4I A;  4XI1 A;  1MM2 A;  5FB1 A;  1WEQ A;  4GND A;  3RTR B;  2JMI A;  2XB1 A;  2L43 A;  2OXQ C;  3GV4 A;  3PLW A;  2E6S A;  3RPG B;  4Z0R A;  4AUQ B;  2YU4 A;  3LJU X;  2FD4 A;  3T9K A;  2NAA A;  1WE9 A;  3ZPV 1;  1Z2Q A;  3EB6 A;  5DIN A;  2KGG A;  3ZYQ A;  2LGK A;  5G04 B;  3N9O A;  1G25 A;  3KV5 A;  2VPB A;  4QF2 A;  4A49 A;  2MIQ A;  4ZUX U;  4AP4 A;  1IYM A;  3O35 A;  3ASL A;  4GB0 A;  2ECV A;  4FJC A;  4R2Y A;  2EXU A;  2ECT A;  2EGP A;  4L7X A;  4YBS A;  4ZDT A;  2LN0 A;  2VNF A;  2KWO A;  2YHN A;  1WEP A;  4B7Y C;  1ZBD B;  5TBN A;  1WEW A;  5B79 A;  5I3L A;  2EA6 A;  5C13 A;  2ECG A;  3N9N A;  3QZV A;  2PNX A;  2RSD A;  3MHH A;  2LGL A;  2HYE D;  1WEE A;  3DDT A;  1X4U A;  2L5U A;  3LQH A;  5SVX A;  3M99 A;  2MNY A;  3MDB C;  2M85 A;  3L1X A;  1LDJ B;  2MKE A;  4YAD A;  2YSJ A;  3KV6 A;  2YYR A;  3FAO A;  1U6G B;  3N9Q A;  2KFT A;  2F42 A;  3U5P A;  5EYA F;  5LKZ A;  2ECI A;  2MA5 A;  2LGG A;  2M13 A;  5J3X A;  3DPL R;  2ECN A;  2VPG A;  4N4F A;  2MNZ A;  2JM3 A;  5B8D A;  2CON A;  2AN6 A;  2JUN A;  2CSV A;  1VYX A;  4AYC A;  5K3Q A;  4BBQ A;  3N9P A;  4UI9 B;  4YAX A;  5TDR A;  2C2L A;  1WFK A;  2VJF A;  2MD7 B;  2FUI A;  2LAU A;  2M3H A;  5B76 A;  4FIP A;  2VPD A;  2XEU A;  5D1L B;  3C6W A;  5G0F A;  5FB0 A;  3HCS A;  3ZTG A;  3E2D A;  2I50 A;  4N3W A;  2DSM A;  4NN2 A;  4X3G A;  4LLB A;  2K16 A;  1DVP A;  2KU3 A;  2IDA A;  2C2V S;  2KWK A;  5B78 A;  2ECJ A;  4CCG X;  4FO9 A;  5JG6 A;  2QIC A;  3V43 A;  2LXP C;  2YUR A;  4AVX A;  1DCQ A;  4MVT A;  4AYC B;  4I7C A;  2LDR A;  3O36 A;  2YQL A;  2PUY A;  2CSZ A;  3Q1D A;  4GNG A;  4GNE A;  4YC9 A;  1N87 A;  4Z0O A;  5LCW B;  2JMJ A;  4LK9 A;  2F6J A;  2YRE A;  5H1T A;  2FSA A;  3HTK C;  3FAN A;  2JRJ A;  5C11 A;  3HCU A;  2K17 A;  1F62 A;  4A4C A;  5D1K B;  3T6R A;  4S3O C;  3U5M A;  4YBT A;  4P5O B;  4IC2 A;  2K1J A;  2KGI A;  2XOZ A;  3KQI A;  3SOW A;  5KH7 A;  4O64 A;  2XOY A;  1VFY A;  2KIZ A;  4UP5 A;  5B75 A;  3EB5 A;  2VPE A;  1FBV A;  1HYI A;  3N9L A;  4IC3 A;  2L0B A;  2Y1N A;  4MSX A;  4R7E A;  2KR4 A;  5LKX A;  2LXH C;  3T7L A;  4LJN A;  2MD8 C;  1JM7 A;  2YVR A;  2D8U A;  5FEY A;  2FUU A;  3ZPV E;  1E4U A;  2D8S A;  4YAB A;  2DX8 A;  5H9M A;  1V87 A;  4FK5 A;  3SOU A;  3O34 A;  5G05 B;  2G43 A;  4WZ0 A;  5SVY A;  1WEM A;  2IQJ A;  4ZQL A;  3U5O A;  4I7B A;  4F1P A;  3DWD A;  2CT2 A;  3LRQ A;  1WEN A;  3MHS A;  1JOC A;  1WEV A;  2VP7 A;  3HCT A;  2HDP A;  1RMD A;  1K2F A;  1WEU A;  3L11 A;  2YSM A;  2MUM A;  2KYU A;  2KWJ A;  5H1V A;  3VK6 A;  4S3O B;  5KH3 A;  5AIT A;  2L75 A;  2LGV A;  2L7P A;  4WA6 A;  4WZ3 B;  2KRE A;  2MT5 A;  4PPE A;  2UZG A;  2EGM A;  3C5K A;  3KDE C;  4L58 A;  5AIU A;  1MM3 A;  2ECW A;  3PUQ A;  1WIM A;  2H0D A;  2M6M A;  3FM8 C;  3LVQ E;  4GNF A;  3L1Z B;  3N9M A;  1X4J A;  3LDY A;  4H9D A;  4QF3 A;  1WES A;  2OWA A;  4BHW A;  2CKL A;  4C9Z A;  1BOR A;  2L80 A;  3PHD A;  1XWH A;  1LDK C;  2VJF B;  4WZ2 A;  3FL2 A;  2M1R A;  3IHP A;  2JMD A;  5D1M B;  5H1U A;  2KWN A;  2QIZ A;  4V3L C;  2LRI C;  4A4B A;  5DKA A;  2YUC A;  3U5N A;  5B77 A;  3SHB A;  5SVI A;  3KNV A;  3NG2 A;  2F6N A;  2RI7 A;  4F52 B;  3M7K A;  2Y1M A;  1Z60 A; 
#chains in the Genus database with same CATH homology
 3O47 A;  5SVY A;  2P57 A;  2XOZ A;  3PLW A;  2M13 A;  2DJA A;  2LAU A;  2YVR A;  2XOY A;  2B0O E;  2IQJ A;  2E61 A;  4Z0R A;  2D8U A;  2CRW A;  3DDT A;  3LJU X;  1DCQ A;  5SVX A;  2EXU A;  2FD4 A;  3T9K A;  2KKX A;  3H7H A;  4F1P A;  2RR4 A;  3FM8 C;  4OGC A;  3LVQ E;  3MDB C;  2CRR A;  2JM3 A;  2CON A;  2L7P A;  3DWD A;  2JUN A;  4O62 A;  5SVI B;  2CSV A;  2MKE A;  3E2D A;  3LDY A;  4H9D A;  3Q1D A;  4Z0O A;  5SVI A;  2FFW A;  2KKY A;  5K3Q A;  2OWA A;  2YRE A;  3SUB A;  3LVR E;  2XP0 A;  2XOC A;  4QQ4 A;  2EGM A;  3FEH A;  3M7K A;  3KDE C;  4OGE A;  3FJU B;  3JUE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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