3DJMA

Crystal structure of a protein of unknown function from duf427 family (rsph17029_0682) from rhodobacter sphaeroides 2.4.1 at 2.51 a resolution
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
113
structure length
113
Chain Sequence
MNNHIRLRKAEGKWVIRTDSAVLGETLNAIELTEGSRDPVIYFPREDVAMVMFDKSEKVTACPLKGEASYYSIVGASGTLKDAAWSYESPKEGLEAIAGYLAFAPDCTKVGQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Uncharacterized Protein DUF427
publication title Crystal structure of Protein of unknown function (DUF427) (YP_001042567.1) from RHODOBACTER SPHAEROIDES ATCC 17029 at 2.51 A resolution
rcsb
source organism Rhodobacter sphaeroides 2.4.1
total genus 19
structure length 113
sequence length 113
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2008-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04248 NTP_transf_9 Domain of unknown function (DUF427)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.40 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 3djmA00
3DJMA
chains in the Genus database with same CATH superfamily
3E0MA 2RQAA 3LRRA 5F9FA 3ZD6A 5F98A 4V30A 2K8DA 2KZNA 3WX1A 4V2ZA 1L1DA 3WX2A 2RMJA 4A2VA 2YKGA 5AMHA 2KV1A 4BPBA 3CEZA 3FACA 2QFBA 3EQTA 3HCIA 1TXJA 3HCGA 3MAOA 1H6QA 2HR9A 3EBMA 3ZD7A 3OG8A 3HCJA 2RQBA 4TZUA 2QFDA 3LRNA 3NCUA 1FWQA 3HCHA 4CI1B 4CI3B 2FU5A 1HXRA 5E3HA 4V2YA 3CXKA 4V31A 5F9HA 2KWBA 2LOYA 3DJMA 3E0OA 2LVLA 4A2XA 4CI2B 3GA3A 4TZ4C 4AY2A 4TZCA 1H7YA 3P3KA 1YZ1A 2W4RA
chains in the Genus database with same CATH topology
2RQAA 3LRRA 5F9FA 3ZD6A 5F98A 2RMJA 4A2VA 2YKGA 4BPBA 3FACA 2QFBA 3EQTA 1TXJA 1H6QA 2HR9A 3EBMA 3ZD7A 3OG8A 2RQBA 2QFDA 3LRNA 3NCUA 1FWQA 2FU5A 1HXRA 5E3HA 5F9HA 2KWBA 2LOYA 3DJMA 1H7YA 2LVLA 4A2XA 3GA3A 4AY2A 3P3KA 1YZ1A 2W4RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DJM A; 
#chains in the Genus database with same CATH topology
 3E0M A;  2RQA A;  3LRR A;  5F9F A;  3ZD6 A;  5F98 A;  4V30 A;  2K8D A;  2KZN A;  3WX1 A;  4V2Z A;  1L1D A;  3WX2 A;  2RMJ A;  4A2V A;  2YKG A;  5AMH A;  2KV1 A;  4BPB A;  3CEZ A;  3FAC A;  2QFB A;  3EQT A;  3HCI A;  1TXJ A;  3HCG A;  3MAO A;  1H6Q A;  2HR9 A;  3EBM A;  3ZD7 A;  3OG8 A;  3HCJ A;  2RQB A;  4TZU A;  2QFD A;  3LRN A;  3NCU A;  1FWQ A;  3HCH A;  4CI1 B;  4CI3 B;  2FU5 A;  1HXR A;  5E3H A;  4V2Y A;  3CXK A;  4V31 A;  5F9H A;  2KWB A;  2LOY A;  3DJM A;  3E0O A;  2LVL A;  4A2X A;  4CI2 B;  3GA3 A;  4TZ4 C;  4AY2 A;  4TZC A;  1H7Y A;  3P3K A;  1YZ1 A;  2W4R A; 
#chains in the Genus database with same CATH homology
 2RQA A;  3LRR A;  5F9F A;  3ZD6 A;  5F98 A;  2RMJ A;  4A2V A;  2YKG A;  4BPB A;  3FAC A;  2QFB A;  3EQT A;  1TXJ A;  1H6Q A;  2HR9 A;  3EBM A;  3ZD7 A;  3OG8 A;  2RQB A;  2QFD A;  3LRN A;  3NCU A;  1FWQ A;  2FU5 A;  1HXR A;  5E3H A;  5F9H A;  2KWB A;  2LOY A;  3DJM A;  1H7Y A;  2LVL A;  4A2X A;  3GA3 A;  4AY2 A;  3P3K A;  1YZ1 A;  2W4R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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