3DS1A

Hiv-1 capsid c-terminal domain mutant (e187a) in complex with an inhibitor of particle assembly (cai)
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
81
structure length
81
Chain Sequence
TSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTATLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPGHKA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV-1 CAPSID PROTEIN
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 29
structure length 81
sequence length 81
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds1A00
4QNBA 3G1IA 1EIAA 2ONTA 4COPA 3G21A 4U0CA 1EOQA 2BUOA 2JO0A 3LRYA 3P05A 3VRLC 4U0EA 5HGOA 5HGMA 3NTEA 3DS3A 2L6EA 3DS1A 2JYGA 4U0BA 4WYMA 2KODA 3G28A 3G26A 4M0IA 3G29A 5JPAA 4XRQA 2XXMA 2M8PA 3H4EA 5HGLA 4U0FA 4U0AA 1A43A 2M8NA 4U0DA 3DS0A 1E6JP 4XFXA 4XROA 4COCA 1QRJA 3MGEA 4IPYA 4XFYA 3G0VA 2LF4A 4XFZA 2M8LA 1BAJA 2EIAA 5HGNA 1D1DA 3DPHA 5DCKA 2JYLA 3DTJA 1A8OA 3H47A 4PH0A 4PH1A 5I4TG 2XT1A 3DS5A 3DS4A 3DS2A 2XV6A 3G1GA 1AUMA
chains in the Genus database with same CATH superfamily
1AF8A 2LOLA 2GYKA 2K0XA 1YJ9P 3CE7A 1IMQA 1VQMP 3CCRP 2JB0A 3E2DA 3DS0A 1UJZA 1Q7YQ 2JAZA 2L4BA 2M8LA 2CGQA 1D1DA 3U43A 1S72P 4HKGA 2BUOA 2MVUA 2KGEA 2MD9A 3HYBA 5JPAA 2M8PA 2M8NA 3NY7B 2DGYA 3CCLP 1VQPP 1KD1Q 2JGPA 1NJIQ 2XZ0D 1M90Q 5KP8B 4H2YC 1L0HA 3GZLA 4BPFA 3P05A 1M6EX 2CNRA 1K8AQ 2FQ2A 1RNIA 1ZNVA 2ERHA 3H4EA 1JJ2O 1A43A 2L0QA 3B5IA 1E0HA 2PENA 2EG5A 3CC4P 4H2WC 5KP7B 2KGAA 3G1IA 2KWLA 2LIUA 2JBGA 1UNKA 4U0EA 2FQ0A 2PEKA 3G28A 2E1MA 1K30A 1QRJA 3GJNA 1BAJA 2FVEA 2VLPA 2PNGA 4QKOA 3CCJP 1ACPA 1EOQA 1KLPA 1T8KA 1YIJP 3DS1A 1NQ4A 2FQ1A 2KOSA 3G6EP 2VLOA 4U0AA 4MRTC 4XFXA 3EJBA 3Q20A 4XFYA 1F80D 2VLQA 3DS2A 3GZMA 1EIAA 1M6NA 4R0MA 4U0BA 1Q86Q 2GZFA 4XRQA 1VKUA 4F37A 2K2QA 5BS2A 5KP6B 2LPKA 4COCA 3G0VA 3CCEP 4GR2A 3DPHA 3H47A 4BPHA 2K94A 2AVAA 5HV8A 3I56P 5HGOA 2AFDA 1KC8Q 4PWVB 3G71P 3RG6C 3CC2P 2OTJP 1Q81Q 3I55P 1X3OA 4IPYA 2GDXA 2KG9A 2JU2A 2LL8A 1RO2A 2K0YA 2XZ1C 2L22A 5HGMA 3RG2A 2LIWA 3EJDA 3DS3A 3G26A 2CWOA 1AYIA 4DG9A 2AF8A 1W2BO 2FACA 2EHTA 3MGEA 1VQ9P 5HGNA 2GDYA 3G1GA 2N6YA 2VSQA 2GZEA 3G29A 2LMLA 1M1KQ 4UHPB 2CQ8A 1KQSO 2N50A 1VQ7P 1YJNP 3CMEP 2DNWA 5I4TG 2KR5A 5HGLA 4U0DA 4GR6A 4COPA 2KOQA 2KOOA 2FAEA 5CZDB 1FR2A 5BS1A 2N5HA 2LKIA 2M5RA 2KG8A 4IZ6A 2AFEA 1YHQP 1HQBA 4XROA 7CEIA 4XFZA 3CCMP 5DCKA 2K0DX 2EHSA 2PEMA 3DS4A 3CCUP 1AUMA 4QNBA 2KGDA 2JO0A 2KG6A 2FVAA 2MF4A 3VRLC 1ZMBA 2MR8A 1DV5A 3LMOA 2MY5A 2L9FA 3M1MA 5EW5E 2KORA 2MVVA 4CA3A 3CCSP 2X2BA 3G4SP 2Z46A 2GDWA 1VQ5P 1VQ8P 3NTEA 5F2KA 1VQNP 1DNYA 2KODA 1RO0A 3CXCO 1MZ8A 1N8RQ 1GXHA 1K73Q 2KW2A 2FVFA 1GXGA 2JU1A 1YI2P 2N6ZA 1QVFO 1VQOP 2LF4A 1L0IA 2JYLA 1A8OA 4NEOA 2XV6A 2MR7A 1CEIA 2K93A 3CCQP 4U0CA 3LRYA 1VQLP 2L6EA 2ROQA 2KOPA 1Z6MA 1VQ6P 1E6JP 1OR5A 2QA4P 2PEJA 3B4QA 3DTJA 3GKLC 2PY8A 1Q82Q 2OTLP 5EJDA 2CG5B 2ONTA 4BPGA 3G21A 2NO8A 5F2OA 1YITP 2XXMA 3EJEA 4U0FA 1VQ4P 2N98A 1IUQA 3WBHA 2FHSC 2LTEA 5HVCA 2BHVA 3CMAP 2K92A 2OARA 1IMPA 2JQ4A 3H0DA 2N5IA 2JYGA 3HZQA 4M0IA 3CC7P 2PEIA 3OW2O 2Z44A 3CD6P 2QEXP 3CPWO 1VHNA 1K9MQ 1HY8A 2KGCA 2P9XA 1M74A 1GPJA 2EIAA 4H2XC 1EMVA 2VLNA 2K5XA 2FADA 5F2NA 2GZIA 4PXHB 4WYMA 2WPTA 2GZGA 2Z45A 1YJWP 2PEOA 2EFJA 1BXIA 3CCVP 4PH0A 4PH1A 2PEQA 2QNWA 3DS5A 1VQKP 2GZJA 1QVGO 2XT1A
chains in the Genus database with same CATH topology
3CCJP 3CCQP 4U0CA 1EOQA 3LRYA 1VQLP 1YIJP 1YJ9P 2L6EA 3DS1A 3G6EP 3G29A 1VQMP 3CCRP 3E2DA 1M1KQ 4U0AA 1VQ6P 3DS0A 1E6JP 1KQSO 4XFXA 1Q7YQ 2QA4P 2PEJA 3Q20A 4XFYA 2M8LA 1D1DA 1VQ7P 3DTJA 1YJNP 3CMEP 2PY8A 1Q82Q 5I4TG 1S72P 5HGLA 3DS2A 4U0DA 2OTLP 4GR6A 1EIAA 2ONTA 4COPA 1M6NA 3G21A 2BUOA 5F2OA 5BS1A 3HYBA 4U0BA 1YITP 1Q86Q 5JPAA 4XRQA 2XXMA 2M8PA 4U0FA 1YHQP 1VQ4P 2M8NA 1IUQA 3WBHA 2DGYA 5BS2A 4XROA 4COCA 3CCLP 2BHVA 1VQPP 1KD1Q 3G0VA 1NJIQ 4XFZA 3CCEP 4GR2A 3DPHA 5DCKA 3CCMP 1M90Q 3H47A 3CMAP 2PEMA 3DS4A 3CCUP 1AUMA 4QNBA 2OARA 2JO0A 3I56P 3P05A 3H0DA 3VRLC 1ZMBA 5HGOA 1K8AQ 2JYGA 3HZQA 4M0IA 1KC8Q 1RNIA 3G71P 3RG6C 3CC7P 2PEIA 3OW2O 3H4EA 2Z44A 3CC2P 1JJ2O 1A43A 3M1MA 3CD6P 3B5IA 2QEXP 3CPWO 2OTJP 1Q81Q 1K9MQ 3I55P 4IPYA 2PENA 2P9XA 1M74A 2EG5A 2EIAA 3CCSP 3CC4P 3G4SP 2Z46A 1QVGO 1RO2A 3G1IA 1VQ5P 5F2NA 4U0EA 1VQ8P 5HGMA 3NTEA 5F2KA 3DS3A 1VQNP 4WYMA 2PEKA 2KODA 3G28A 3G26A 1RO0A 2CWOA 3CXCO 1N8RQ 1K73Q 1W2BO 2Z45A 1YI2P 2E1MA 1YJWP 1K30A 1QVFO 1QRJA 2PEOA 1VQOP 3MGEA 2LF4A 2EFJA 1VQ9P 1BAJA 5HGNA 3CCVP 2JYLA 1A8OA 4PH0A 4PH1A 2PEQA 3DS5A 1VQKP 1M6EX 2XV6A 3G1GA 2XT1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QNB A;  3G1I A;  1EIA A;  2ONT A;  4COP A;  3G21 A;  4U0C A;  1EOQ A;  2BUO A;  2JO0 A;  3LRY A;  3P05 A;  3VRL C;  4U0E A;  5HGO A;  5HGM A;  3NTE A;  3DS3 A;  2L6E A;  3DS1 A;  2JYG A;  4U0B A;  4WYM A;  2KOD A;  3G28 A;  3G26 A;  4M0I A;  3G29 A;  5JPA A;  4XRQ A;  2XXM A;  2M8P A;  3H4E A;  5HGL A;  4U0F A;  4U0A A;  1A43 A;  2M8N A;  4U0D A;  3DS0 A;  1E6J P;  4XFX A;  4XRO A;  4COC A;  1QRJ A;  3MGE A;  4IPY A;  4XFY A;  3G0V A;  2LF4 A;  4XFZ A;  2M8L A;  1BAJ A;  2EIA A;  5HGN A;  1D1D A;  3DPH A;  5DCK A;  2JYL A;  3DTJ A;  1A8O A;  3H47 A;  4PH0 A;  4PH1 A;  5I4T G;  2XT1 A;  3DS5 A;  3DS4 A;  3DS2 A;  2XV6 A;  3G1G A;  1AUM A; 
#chains in the Genus database with same CATH topology
 1AF8 A;  2LOL A;  2GYK A;  2K0X A;  1YJ9 P;  3CE7 A;  1IMQ A;  1VQM P;  3CCR P;  2JB0 A;  3E2D A;  3DS0 A;  1UJZ A;  1Q7Y Q;  2JAZ A;  2L4B A;  2M8L A;  2CGQ A;  1D1D A;  3U43 A;  1S72 P;  4HKG A;  2BUO A;  2MVU A;  2KGE A;  2MD9 A;  3HYB A;  5JPA A;  2M8P A;  2M8N A;  3NY7 B;  2DGY A;  3CCL P;  1VQP P;  1KD1 Q;  2JGP A;  1NJI Q;  2XZ0 D;  1M90 Q;  5KP8 B;  4H2Y C;  1L0H A;  3GZL A;  4BPF A;  3P05 A;  1M6E X;  2CNR A;  1K8A Q;  2FQ2 A;  1RNI A;  1ZNV A;  2ERH A;  3H4E A;  1JJ2 O;  1A43 A;  2L0Q A;  3B5I A;  1E0H A;  2PEN A;  2EG5 A;  3CC4 P;  4H2W C;  5KP7 B;  2KGA A;  3G1I A;  2KWL A;  2LIU A;  2JBG A;  1UNK A;  4U0E A;  2FQ0 A;  2PEK A;  3G28 A;  2E1M A;  1K30 A;  1QRJ A;  3GJN A;  1BAJ A;  2FVE A;  2VLP A;  2PNG A;  4QKO A;  3CCJ P;  1ACP A;  1EOQ A;  1KLP A;  1T8K A;  1YIJ P;  3DS1 A;  1NQ4 A;  2FQ1 A;  2KOS A;  3G6E P;  2VLO A;  4U0A A;  4MRT C;  4XFX A;  3EJB A;  3Q20 A;  4XFY A;  1F80 D;  2VLQ A;  3DS2 A;  3GZM A;  1EIA A;  1M6N A;  4R0M A;  4U0B A;  1Q86 Q;  2GZF A;  4XRQ A;  1VKU A;  4F37 A;  2K2Q A;  5BS2 A;  5KP6 B;  2LPK A;  4COC A;  3G0V A;  3CCE P;  4GR2 A;  3DPH A;  3H47 A;  4BPH A;  2K94 A;  2AVA A;  5HV8 A;  3I56 P;  5HGO A;  2AFD A;  1KC8 Q;  4PWV B;  3G71 P;  3RG6 C;  3CC2 P;  2OTJ P;  1Q81 Q;  3I55 P;  1X3O A;  4IPY A;  2GDX A;  2KG9 A;  2JU2 A;  2LL8 A;  1RO2 A;  2K0Y A;  2XZ1 C;  2L22 A;  5HGM A;  3RG2 A;  2LIW A;  3EJD A;  3DS3 A;  3G26 A;  2CWO A;  1AYI A;  4DG9 A;  2AF8 A;  1W2B O;  2FAC A;  2EHT A;  3MGE A;  1VQ9 P;  5HGN A;  2GDY A;  3G1G A;  2N6Y A;  2VSQ A;  2GZE A;  3G29 A;  2LML A;  1M1K Q;  4UHP B;  2CQ8 A;  1KQS O;  2N50 A;  1VQ7 P;  1YJN P;  3CME P;  2DNW A;  5I4T G;  2KR5 A;  5HGL A;  4U0D A;  4GR6 A;  4COP A;  2KOQ A;  2KOO A;  2FAE A;  5CZD B;  1FR2 A;  5BS1 A;  2N5H A;  2LKI A;  2M5R A;  2KG8 A;  4IZ6 A;  2AFE A;  1YHQ P;  1HQB A;  4XRO A;  7CEI A;  4XFZ A;  3CCM P;  5DCK A;  2K0D X;  2EHS A;  2PEM A;  3DS4 A;  3CCU P;  1AUM A;  4QNB A;  2KGD A;  2JO0 A;  2KG6 A;  2FVA A;  2MF4 A;  3VRL C;  1ZMB A;  2MR8 A;  1DV5 A;  3LMO A;  2MY5 A;  2L9F A;  3M1M A;  5EW5 E;  2KOR A;  2MVV A;  4CA3 A;  3CCS P;  2X2B A;  3G4S P;  2Z46 A;  2GDW A;  1VQ5 P;  1VQ8 P;  3NTE A;  5F2K A;  1VQN P;  1DNY A;  2KOD A;  1RO0 A;  3CXC O;  1MZ8 A;  1N8R Q;  1GXH A;  1K73 Q;  2KW2 A;  2FVF A;  1GXG A;  2JU1 A;  1YI2 P;  2N6Z A;  1QVF O;  1VQO P;  2LF4 A;  1L0I A;  2JYL A;  1A8O A;  4NEO A;  2XV6 A;  2MR7 A;  1CEI A;  2K93 A;  3CCQ P;  4U0C A;  3LRY A;  1VQL P;  2L6E A;  2ROQ A;  2KOP A;  1Z6M A;  1VQ6 P;  1E6J P;  1OR5 A;  2QA4 P;  2PEJ A;  3B4Q A;  3DTJ A;  3GKL C;  2PY8 A;  1Q82 Q;  2OTL P;  5EJD A;  2CG5 B;  2ONT A;  4BPG A;  3G21 A;  2NO8 A;  5F2O A;  1YIT P;  2XXM A;  3EJE A;  4U0F A;  1VQ4 P;  2N98 A;  1IUQ A;  3WBH A;  2FHS C;  2LTE A;  5HVC A;  2BHV A;  3CMA P;  2K92 A;  2OAR A;  1IMP A;  2JQ4 A;  3H0D A;  2N5I A;  2JYG A;  3HZQ A;  4M0I A;  3CC7 P;  2PEI A;  3OW2 O;  2Z44 A;  3CD6 P;  2QEX P;  3CPW O;  1VHN A;  1K9M Q;  1HY8 A;  2KGC A;  2P9X A;  1M74 A;  1GPJ A;  2EIA A;  4H2X C;  1EMV A;  2VLN A;  2K5X A;  2FAD A;  5F2N A;  2GZI A;  4PXH B;  4WYM A;  2WPT A;  2GZG A;  2Z45 A;  1YJW P;  2PEO A;  2EFJ A;  1BXI A;  3CCV P;  4PH0 A;  4PH1 A;  2PEQ A;  2QNW A;  3DS5 A;  1VQK P;  2GZJ A;  1QVG O;  2XT1 A; 
#chains in the Genus database with same CATH homology
 3CCJ P;  3CCQ P;  4U0C A;  1EOQ A;  3LRY A;  1VQL P;  1YIJ P;  1YJ9 P;  2L6E A;  3DS1 A;  3G6E P;  3G29 A;  1VQM P;  3CCR P;  3E2D A;  1M1K Q;  4U0A A;  1VQ6 P;  3DS0 A;  1E6J P;  1KQS O;  4XFX A;  1Q7Y Q;  2QA4 P;  2PEJ A;  3Q20 A;  4XFY A;  2M8L A;  1D1D A;  1VQ7 P;  3DTJ A;  1YJN P;  3CME P;  2PY8 A;  1Q82 Q;  5I4T G;  1S72 P;  5HGL A;  3DS2 A;  4U0D A;  2OTL P;  4GR6 A;  1EIA A;  2ONT A;  4COP A;  1M6N A;  3G21 A;  2BUO A;  5F2O A;  5BS1 A;  3HYB A;  4U0B A;  1YIT P;  1Q86 Q;  5JPA A;  4XRQ A;  2XXM A;  2M8P A;  4U0F A;  1YHQ P;  1VQ4 P;  2M8N A;  1IUQ A;  3WBH A;  2DGY A;  5BS2 A;  4XRO A;  4COC A;  3CCL P;  2BHV A;  1VQP P;  1KD1 Q;  3G0V A;  1NJI Q;  4XFZ A;  3CCE P;  4GR2 A;  3DPH A;  5DCK A;  3CCM P;  1M90 Q;  3H47 A;  3CMA P;  2PEM A;  3DS4 A;  3CCU P;  1AUM A;  4QNB A;  2OAR A;  2JO0 A;  3I56 P;  3P05 A;  3H0D A;  3VRL C;  1ZMB A;  5HGO A;  1K8A Q;  2JYG A;  3HZQ A;  4M0I A;  1KC8 Q;  1RNI A;  3G71 P;  3RG6 C;  3CC7 P;  2PEI A;  3OW2 O;  3H4E A;  2Z44 A;  3CC2 P;  1JJ2 O;  1A43 A;  3M1M A;  3CD6 P;  3B5I A;  2QEX P;  3CPW O;  2OTJ P;  1Q81 Q;  1K9M Q;  3I55 P;  4IPY A;  2PEN A;  2P9X A;  1M74 A;  2EG5 A;  2EIA A;  3CCS P;  3CC4 P;  3G4S P;  2Z46 A;  1QVG O;  1RO2 A;  3G1I A;  1VQ5 P;  5F2N A;  4U0E A;  1VQ8 P;  5HGM A;  3NTE A;  5F2K A;  3DS3 A;  1VQN P;  4WYM A;  2PEK A;  2KOD A;  3G28 A;  3G26 A;  1RO0 A;  2CWO A;  3CXC O;  1N8R Q;  1K73 Q;  1W2B O;  2Z45 A;  1YI2 P;  2E1M A;  1YJW P;  1K30 A;  1QVF O;  1QRJ A;  2PEO A;  1VQO P;  3MGE A;  2LF4 A;  2EFJ A;  1VQ9 P;  1BAJ A;  5HGN A;  3CCV P;  2JYL A;  1A8O A;  4PH0 A;  4PH1 A;  2PEQ A;  3DS5 A;  1VQK P;  1M6E X;  2XV6 A;  3G1G A;  2XT1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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