3DS5A

Hiv-1 capsid c-terminal domain mutant (n183a)
Total Genus 28
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
73
structure length
73
Chain Sequence
SILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKAWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords HIV-1 CAPSID PROTEIN
publication title Residues in the HIV-1 Capsid Assembly Inhibitor Binding Site Are Essential for Maintaining the Assembly-competent Quaternary Structure of the Capsid Protein.
pubmed doi rcsb
source organism Human immunodeficiency virus 1
total genus 28
structure length 73
sequence length 73
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2008-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3ds5A00
5HGOA 4U0CA 1EOQA 1QRJA 3DTJA 4QNBA 5I4TG 2XV6A 2KODA 4XFZA 3G0VA 2M8LA 4XRQA 4IPYA 5DCKA 2JYGA 3DS3A 3VRLC 1A43A 3H4EA 4XROA 3DS4A 1D1DA 1BAJA 2JO0A 3G21A 3DPHA 3DS2A 2M8PA 1E6JP 3H47A 3NTEA 3G1GA 2ONTA 3P05A 3LRYA 1AUMA 4U0EA 1A8OA 2JYLA 3G29A 4U0AA 4COCA 4PH0A 3DS5A 4WYMA 4COPA 5JPAA 2XXMA 4U0DA 2EIAA 5HGMA 4U0BA 5HGNA 3G26A 3G1IA 4M0IA 5HGLA 4PH1A 3G28A 2XT1A 2M8NA 3DS1A 3DS0A 3MGEA 4U0FA 2BUOA 4XFYA 4XFXA 2L6EA 1EIAA 2LF4A
chains in the Genus database with same CATH superfamily
1M6EX 1QRJA 1K9MQ 1A43A 4XROA 2FQ2A 2JO0A 3I56P 3G21A 3G71P 1YHQP 4U0DA 4U0BA 4R0MA 2BHVA 2OTJP 1M74A 1KD1Q 1EOQA 2XV6A 2M8LA 1M90Q 1M1KQ 1ZNVA 2LIUA 2FVAA 2K0YA 2ONTA 1AUMA 2N6ZA 4COCA 1Q81Q 2Z44A 1VKUA 4M0IA 2K0XA 3RG2A 2WPTA 3M1MA 1GPJA 1DNYA 3VRLC 2ERHA 1ZMBA 2GZJA 3DS4A 1BXIA 2FVFA 3CCEP 1T8KA 5HGMA 2KOPA 2DNWA 2JBGA 2KGDA 1NJIQ 3DTJA 2FVEA 2GDYA 2EFJA 4UHPB 2AFDA 3DS3A 2XZ1C 1EMVA 1IMQA 3G1GA 1HQBA 4MRTC 3CXCO 2K0DX 2CQ8A 4IZ6A 1L0IA 2CG5B 1MZ8A 2X2BA 5BS2A 3CCUP 5HGLA 1VQKP 2CGQA 2LKIA 2L6EA 3CC7P 2K93A 2QA4P 2VLQA 2EG5A 2PENA 3CMEP 4COPA 3B5IA 2N98A 4GR6A 2AVAA 5HV8A 5CZDB 3G1IA 1Q86Q 3RG6C 3GZMA 3CCJP 2KW2A 5HGOA 1VQ8P 2FHSC 2KODA 3CCSP 2CNRA 1KQSO 1E0HA 2GZIA 5BS1A 3DPHA 3NTEA 1A8OA 5JPAA 1VQ7P 1X3OA 3HYBA 2L9FA 1M6NA 3EJEA 2CWOA 5EJDA 3I55P 3G0VA 1IUQA 4PXHB 2KG8A 2PNGA 5F2NA 3NY7B 1HY8A 1S72P 2PEMA 2VSQA 2OARA 2JGPA 2OTLP 4BPGA 1YIJP 2XT1A 4BPHA 1W2BO 4U0AA 2GDXA 2GDWA 1DV5A 1VQ5P 1VQMP 3CPWO 2MR7A 2QEXP 1VQPP 7CEIA 2LL8A 2JB0A 2KOOA 2FQ0A 1Q82Q 2LF4A 2QNWA 2L22A 3GZLA 1QVFO 4IPYA 1F80D 1VQ6P 1GXHA 2M5RA 3DS2A 1FR2A 1KC8Q 3DS5A 2LPKA 4CA3A 2GZEA 2N5HA 1VQLP 2EIAA 3GJNA 3G6EP 1YJNP 1CEIA 2LTEA 3DS0A 2FQ1A 5KP6B 1EIAA 3CC2P 1K30A 2NO8A 2KWLA 2KGCA 4XRQA 1IMPA 2N5IA 3H4EA 2N50A 3LRYA 1KLPA 3E2DA 3B4QA 2EHTA 2MD9A 2MF4A 3OW2O 2JU1A 2M8NA 2KGAA 1VQ4P 1YI2P 5I4TG 2PEOA 1VQOP 2MR8A 1BAJA 2LIWA 2PEQA 2K92A 2GZFA 2JAZA 1NQ4A 3CCVP 2GZGA 3DS1A 4XFYA 4U0FA 1N8RQ 4PWVB 3G26A 2FADA 2E1MA 3CE7A 2VLNA 3CD6P 3CMAP 2KOSA 4H2YC 3HZQA 4F37A 1K8AQ 2JQ4A 5EW5E 4PH1A 3G28A 3MGEA 2BUOA 1K73Q 3CCMP 3CCRP 4XFZA 5DCKA 2MVVA 1RO2A 2K94A 2KOQA 5KP8B 1D1DA 1YJWP 2JYLA 3G29A 2MY5A 4HKGA 4PH0A 1AF8A 4H2WC 2LMLA 2KG9A 1AYIA 3CCQP 3U43A 4BPFA 1OR5A 2GYKA 2AFEA 2JYGA 1VQNP 2KG6A 4NEOA 2PY8A 1Z6MA 3GKLC 1GXGA 2FAEA 2XZ0D 2PEJA 5HGNA 1UJZA 2KORA 2ROQA 4XFXA 3WBHA 1QVGO 4U0CA 4QKOA 3CCLP 2L0QA 4DG9A 5HVCA 2MVUA 2AF8A 3EJBA 1Q7YQ 1VHNA 2K5XA 2M8PA 1E6JP 3H47A 2EHSA 4WYMA 5F2OA 2N6YA 2Z46A 1RNIA 1L0HA 2L4BA 1RO0A 3Q20A 2P9XA 5F2KA 2LOLA 2VLPA 3H0DA 2PEIA 4QNBA 3G4SP 2K2QA 1JJ2O 3CC4P 2KR5A 1UNKA 2FACA 2KGEA 5KP7B 2PEKA 4GR2A 3P05A 2JU2A 4U0EA 1VQ9P 1YJ9P 2VLOA 2Z45A 3EJDA 2DGYA 3LMOA 1ACPA 1YITP 2XXMA 4H2XC
chains in the Genus database with same CATH topology
1K73Q 1M6EX 1QRJA 3CCMP 3CCRP 1QVFO 4XFZA 3CC7P 4IPYA 5DCKA 2QA4P 1K9MQ 1RO2A 1A43A 4XROA 1VQ6P 2EG5A 2PENA 3G71P 2JO0A 3I56P 3G21A 1D1DA 3DS2A 1YJWP 2JYLA 3G29A 1KC8Q 4PH0A 3CMEP 3DS5A 4COPA 3B5IA 4GR6A 1YHQP 4U0DA 1VQLP 2EIAA 3G6EP 4U0BA 1YJNP 1Q86Q 3G1IA 3RG6C 3CCQP 3DS0A 3CCJP 2BHVA 2OTJP 1EIAA 1M74A 1KD1Q 3CC2P 5HGOA 1K30A 1EOQA 1VQ8P 2XV6A 2KODA 3CCSP 2M8LA 4XRQA 1KQSO 1M90Q 2JYGA 1VQNP 1M1KQ 3H4EA 5BS1A 3DPHA 2PY8A 3NTEA 2ONTA 3LRYA 1AUMA 1A8OA 4COCA 3E2DA 1Q81Q 2Z44A 5JPAA 1VQ7P 3HYBA 3OW2O 2PEJA 5HGNA 1M6NA 4M0IA 2M8NA 4XFXA 2CWOA 3WBHA 1QVGO 1VQ4P 4U0CA 1YI2P 5I4TG 3I55P 3G0VA 2PEOA 3CCLP 1IUQA 3M1MA 1VQOP 5F2NA 3VRLC 1ZMBA 3DS4A 1BAJA 1Q7YQ 2M8PA 1E6JP 3CCEP 2PEQA 3H47A 1S72P 2PEMA 4WYMA 5F2OA 2Z46A 2OARA 1RNIA 5HGMA 2OTLP 1RO0A 3Q20A 2P9XA 5F2KA 3CCVP 1YIJP 2XT1A 3DS1A 4XFYA 4U0FA 1W2BO 1N8RQ 4U0AA 3H0DA 3G26A 2PEIA 1NJIQ 2BUOA 3DTJA 4QNBA 2E1MA 3G4SP 1JJ2O 2EFJA 3CD6P 3CC4P 3CMAP 3DS3A 3HZQA 2PEKA 4GR2A 3P05A 3G1GA 4U0EA 1VQ5P 1VQMP 1YJ9P 1VQ9P 2Z45A 3CPWO 1K8AQ 2QEXP 3CXCO 1VQPP 2DGYA 5BS2A 3CCUP 5HGLA 4PH1A 3G28A 1YITP 1VQKP 3MGEA 2XXMA 2L6EA 1Q82Q 2LF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HGO A;  4U0C A;  1EOQ A;  1QRJ A;  3DTJ A;  4QNB A;  5I4T G;  2XV6 A;  2KOD A;  4XFZ A;  3G0V A;  2M8L A;  4XRQ A;  4IPY A;  5DCK A;  2JYG A;  3DS3 A;  3VRL C;  1A43 A;  3H4E A;  4XRO A;  3DS4 A;  1D1D A;  1BAJ A;  2JO0 A;  3G21 A;  3DPH A;  3DS2 A;  2M8P A;  1E6J P;  3H47 A;  3NTE A;  3G1G A;  2ONT A;  3P05 A;  3LRY A;  1AUM A;  4U0E A;  1A8O A;  2JYL A;  3G29 A;  4U0A A;  4COC A;  4PH0 A;  3DS5 A;  4WYM A;  4COP A;  5JPA A;  2XXM A;  4U0D A;  2EIA A;  5HGM A;  4U0B A;  5HGN A;  3G26 A;  3G1I A;  4M0I A;  5HGL A;  4PH1 A;  3G28 A;  2XT1 A;  2M8N A;  3DS1 A;  3DS0 A;  3MGE A;  4U0F A;  2BUO A;  4XFY A;  4XFX A;  2L6E A;  1EIA A;  2LF4 A; 
#chains in the Genus database with same CATH topology
 1M6E X;  1QRJ A;  1K9M Q;  1A43 A;  4XRO A;  2FQ2 A;  2JO0 A;  3I56 P;  3G21 A;  3G71 P;  1YHQ P;  4U0D A;  4U0B A;  4R0M A;  2BHV A;  2OTJ P;  1M74 A;  1KD1 Q;  1EOQ A;  2XV6 A;  2M8L A;  1M90 Q;  1M1K Q;  1ZNV A;  2LIU A;  2FVA A;  2K0Y A;  2ONT A;  1AUM A;  2N6Z A;  4COC A;  1Q81 Q;  2Z44 A;  1VKU A;  4M0I A;  2K0X A;  3RG2 A;  2WPT A;  3M1M A;  1GPJ A;  1DNY A;  3VRL C;  2ERH A;  1ZMB A;  2GZJ A;  3DS4 A;  1BXI A;  2FVF A;  3CCE P;  1T8K A;  5HGM A;  2KOP A;  2DNW A;  2JBG A;  2KGD A;  1NJI Q;  3DTJ A;  2FVE A;  2GDY A;  2EFJ A;  4UHP B;  2AFD A;  3DS3 A;  2XZ1 C;  1EMV A;  1IMQ A;  3G1G A;  1HQB A;  4MRT C;  3CXC O;  2K0D X;  2CQ8 A;  4IZ6 A;  1L0I A;  2CG5 B;  1MZ8 A;  2X2B A;  5BS2 A;  3CCU P;  5HGL A;  1VQK P;  2CGQ A;  2LKI A;  2L6E A;  3CC7 P;  2K93 A;  2QA4 P;  2VLQ A;  2EG5 A;  2PEN A;  3CME P;  4COP A;  3B5I A;  2N98 A;  4GR6 A;  2AVA A;  5HV8 A;  5CZD B;  3G1I A;  1Q86 Q;  3RG6 C;  3GZM A;  3CCJ P;  2KW2 A;  5HGO A;  1VQ8 P;  2FHS C;  2KOD A;  3CCS P;  2CNR A;  1KQS O;  1E0H A;  2GZI A;  5BS1 A;  3DPH A;  3NTE A;  1A8O A;  5JPA A;  1VQ7 P;  1X3O A;  3HYB A;  2L9F A;  1M6N A;  3EJE A;  2CWO A;  5EJD A;  3I55 P;  3G0V A;  1IUQ A;  4PXH B;  2KG8 A;  2PNG A;  5F2N A;  3NY7 B;  1HY8 A;  1S72 P;  2PEM A;  2VSQ A;  2OAR A;  2JGP A;  2OTL P;  4BPG A;  1YIJ P;  2XT1 A;  4BPH A;  1W2B O;  4U0A A;  2GDX A;  2GDW A;  1DV5 A;  1VQ5 P;  1VQM P;  3CPW O;  2MR7 A;  2QEX P;  1VQP P;  7CEI A;  2LL8 A;  2JB0 A;  2KOO A;  2FQ0 A;  1Q82 Q;  2LF4 A;  2QNW A;  2L22 A;  3GZL A;  1QVF O;  4IPY A;  1F80 D;  1VQ6 P;  1GXH A;  2M5R A;  3DS2 A;  1FR2 A;  1KC8 Q;  3DS5 A;  2LPK A;  4CA3 A;  2GZE A;  2N5H A;  1VQL P;  2EIA A;  3GJN A;  3G6E P;  1YJN P;  1CEI A;  2LTE A;  3DS0 A;  2FQ1 A;  5KP6 B;  1EIA A;  3CC2 P;  1K30 A;  2NO8 A;  2KWL A;  2KGC A;  4XRQ A;  1IMP A;  2N5I A;  3H4E A;  2N50 A;  3LRY A;  1KLP A;  3E2D A;  3B4Q A;  2EHT A;  2MD9 A;  2MF4 A;  3OW2 O;  2JU1 A;  2M8N A;  2KGA A;  1VQ4 P;  1YI2 P;  5I4T G;  2PEO A;  1VQO P;  2MR8 A;  1BAJ A;  2LIW A;  2PEQ A;  2K92 A;  2GZF A;  2JAZ A;  1NQ4 A;  3CCV P;  2GZG A;  3DS1 A;  4XFY A;  4U0F A;  1N8R Q;  4PWV B;  3G26 A;  2FAD A;  2E1M A;  3CE7 A;  2VLN A;  3CD6 P;  3CMA P;  2KOS A;  4H2Y C;  3HZQ A;  4F37 A;  1K8A Q;  2JQ4 A;  5EW5 E;  4PH1 A;  3G28 A;  3MGE A;  2BUO A;  1K73 Q;  3CCM P;  3CCR P;  4XFZ A;  5DCK A;  2MVV A;  1RO2 A;  2K94 A;  2KOQ A;  5KP8 B;  1D1D A;  1YJW P;  2JYL A;  3G29 A;  2MY5 A;  4HKG A;  4PH0 A;  1AF8 A;  4H2W C;  2LML A;  2KG9 A;  1AYI A;  3CCQ P;  3U43 A;  4BPF A;  1OR5 A;  2GYK A;  2AFE A;  2JYG A;  1VQN P;  2KG6 A;  4NEO A;  2PY8 A;  1Z6M A;  3GKL C;  1GXG A;  2FAE A;  2XZ0 D;  2PEJ A;  5HGN A;  1UJZ A;  2KOR A;  2ROQ A;  4XFX A;  3WBH A;  1QVG O;  4U0C A;  4QKO A;  3CCL P;  2L0Q A;  4DG9 A;  5HVC A;  2MVU A;  2AF8 A;  3EJB A;  1Q7Y Q;  1VHN A;  2K5X A;  2M8P A;  1E6J P;  3H47 A;  2EHS A;  4WYM A;  5F2O A;  2N6Y A;  2Z46 A;  1RNI A;  1L0H A;  2L4B A;  1RO0 A;  3Q20 A;  2P9X A;  5F2K A;  2LOL A;  2VLP A;  3H0D A;  2PEI A;  4QNB A;  3G4S P;  2K2Q A;  1JJ2 O;  3CC4 P;  2KR5 A;  1UNK A;  2FAC A;  2KGE A;  5KP7 B;  2PEK A;  4GR2 A;  3P05 A;  2JU2 A;  4U0E A;  1VQ9 P;  1YJ9 P;  2VLO A;  2Z45 A;  3EJD A;  2DGY A;  3LMO A;  1ACP A;  1YIT P;  2XXM A;  4H2X C; 
#chains in the Genus database with same CATH homology
 1K73 Q;  1M6E X;  1QRJ A;  3CCM P;  3CCR P;  1QVF O;  4XFZ A;  3CC7 P;  4IPY A;  5DCK A;  2QA4 P;  1K9M Q;  1RO2 A;  1A43 A;  4XRO A;  1VQ6 P;  2EG5 A;  2PEN A;  3G71 P;  2JO0 A;  3I56 P;  3G21 A;  1D1D A;  3DS2 A;  1YJW P;  2JYL A;  3G29 A;  1KC8 Q;  4PH0 A;  3CME P;  3DS5 A;  4COP A;  3B5I A;  4GR6 A;  1YHQ P;  4U0D A;  1VQL P;  2EIA A;  3G6E P;  4U0B A;  1YJN P;  1Q86 Q;  3G1I A;  3RG6 C;  3CCQ P;  3DS0 A;  3CCJ P;  2BHV A;  2OTJ P;  1EIA A;  1M74 A;  1KD1 Q;  3CC2 P;  5HGO A;  1K30 A;  1EOQ A;  1VQ8 P;  2XV6 A;  2KOD A;  3CCS P;  2M8L A;  4XRQ A;  1KQS O;  1M90 Q;  2JYG A;  1VQN P;  1M1K Q;  3H4E A;  5BS1 A;  3DPH A;  2PY8 A;  3NTE A;  2ONT A;  3LRY A;  1AUM A;  1A8O A;  4COC A;  3E2D A;  1Q81 Q;  2Z44 A;  5JPA A;  1VQ7 P;  3HYB A;  3OW2 O;  2PEJ A;  5HGN A;  1M6N A;  4M0I A;  2M8N A;  4XFX A;  2CWO A;  3WBH A;  1QVG O;  1VQ4 P;  4U0C A;  1YI2 P;  5I4T G;  3I55 P;  3G0V A;  2PEO A;  3CCL P;  1IUQ A;  3M1M A;  1VQO P;  5F2N A;  3VRL C;  1ZMB A;  3DS4 A;  1BAJ A;  1Q7Y Q;  2M8P A;  1E6J P;  3CCE P;  2PEQ A;  3H47 A;  1S72 P;  2PEM A;  4WYM A;  5F2O A;  2Z46 A;  2OAR A;  1RNI A;  5HGM A;  2OTL P;  1RO0 A;  3Q20 A;  2P9X A;  5F2K A;  3CCV P;  1YIJ P;  2XT1 A;  3DS1 A;  4XFY A;  4U0F A;  1W2B O;  1N8R Q;  4U0A A;  3H0D A;  3G26 A;  2PEI A;  1NJI Q;  2BUO A;  3DTJ A;  4QNB A;  2E1M A;  3G4S P;  1JJ2 O;  2EFJ A;  3CD6 P;  3CC4 P;  3CMA P;  3DS3 A;  3HZQ A;  2PEK A;  4GR2 A;  3P05 A;  3G1G A;  4U0E A;  1VQ5 P;  1VQM P;  1YJ9 P;  1VQ9 P;  2Z45 A;  3CPW O;  1K8A Q;  2QEX P;  3CXC O;  1VQP P;  2DGY A;  5BS2 A;  3CCU P;  5HGL A;  4PH1 A;  3G28 A;  1YIT P;  1VQK P;  3MGE A;  2XXM A;  2L6E A;  1Q82 Q;  2LF4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...