3DWDA

Crystal structure of the arfgap domain of human arfgap1
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
118
structure length
116
Chain Sequence
SPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
molecule keywords ADP-ribosylation factor GTPase-activating protein 1
publication title Crystal structure of the ArfGAP domain of human ARFGAP1
rcsb
source organism Homo sapiens
total genus 34
structure length 116
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01412 ArfGap Putative GTPase activating protein for Arf
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.40.160 Alpha Beta 2-Layer Sandwich Herpes Virus-1 Herpes Virus-1 3dwdA00
3LVRE 2P57A 3T9KA 3JUEA 3FEHA 3LJUX 3MDBC 4F1PA 2B0OE 3FM8C 3DWDA 2CRRA 3LVQE 1DCQA 2OWAA 3O47A 2IQJA 3SUBA 2CRWA
chains in the Genus database with same CATH superfamily
4X3GA 5SVIB 4LKAA 2ZETC 3M62A 2KREA 1XWHA 2H0DA 2VPGA 3U5PA 2L5UA 2VJEB 1DVPA 2EA6A 4H9DA 2CONA 2CKLA 2EGMA 4A4CA 5DINA 4CCGX 5C11A 1ZBDB 2L0BA 2ECWA 5FB0A 3FJUB 1JM7B 3LVRE 1WE9A 2NAAA 3LQIA 3ZVYA 4A0CD 2D8UA 4FK5A 5AIUA 2LGLA 1LDKC 3U5MA 2JM3A 5K3QA 3IHPA 2G6QA 4GNDA 5H1UA 1Z2QA 4ZQLA 1HYIA 2QICA 1MM2A 3KDEC 2FSAA 3T7LA 2KYUA 2MNYA 4A4BA 3HCTA 2EXUA 3KV5A 3V43A 2FFWA 5I3LA 4R7EA 2DSMA 5B76A 3FANA 1BORA 3PLWA 2HDPA 3SHBA 3PUQA 2MD7B 2CT2A 3U5OA 3VK6A 4IC3A 2PNXA 2LGGA 5G05B 3LJUX 2DJAA 5EYAF 3EB6A 4F52B 3PHDA 3U5NA 2YVRA 3HCUA 2F6JA 1MM3A 2L75A 2YUCA 3N9PA 4WZ2A 4XI1A 2M1RA 5SVYA 4UP0A 2LN0A 4FO9A 4AYCB 3HTKC 2K16A 3N9LA 4LJNA 3MHHA 1CHCA 1FBVA 1WEQA 2LGKA 2P57A 2YT5A 5J3XA 2XB1A 3N9OA 2ECGA 2KE1A 2H0DB 5LKUA 3N9MA 1N87A 2CKLB 2YQLA 1K2FA 3C6WA 2YHOA 3LVQE 3FAOA 3ZPV1 2L7PA 2EODA 2YYRA 2XOZA 4MVTA 1IYMA 3SOUA 2KWKA 3FL2A 4V3LC 2JMIA 1WFKA 2C2VS 3M99A 5G0FA 1X4UA 2YURA 2FUIA 2L43A 2RI7A 4GB0A 2Y1NA 4A49A 5B8DA 1WILA 1HYJA 1E4UA 3O34A 2LRIC 2KGIA 2AN6A 2EGPA 3FEHA 1MBMA 2M85A 4WZ0A 4I7CA 5TRBA 3E2DA 3M7KA 1WEMA 2LDRA 3L1XA 4Z0RA 4OGCA 2M3HA 3LRQA 4NN2A 1X4IA 3H7HA 2FUUA 2ECIA 2QIZA 5FEYA 2QJ0A 2JRJA 2YW8A 1T1HA 2PUYA 4OGEA 4ZDTA 3M63A 2OXQC 3ZPVE 2E61A 4YABA 5G04B 3ZYQA 2LQ6A 5FB1A 5TDWA 3PURA 2VPEA 1LDJB 2XOYA 5TDRA 2LXPC 4QF2A 4V3KC 4YADA 5C13A 2LXHC 2YHNA 2YREA 4UI9B 3SOWA 1WEEA 3O37A 5TABA 4W4UA 2I50A 1VFYA 2Y1MA 1WEVA 2CSYA 3O35A 2KWJA 1WEPA 1DCQA 3O36A 4WA6A 4YBTA 4LK9A 4I7DA 4PPEA 1WESA 4LLBA 4S3OC 4WZ3B 2MKEA 3LDYA 3T9KA 5D1MB 5B75A 1Z60A 2JUNA 3N9NA 4N4FA 4YAXA 2XOCA 4P5OB 3C5KA 1V87A 2KU3A 4FIPA 5LCWB 1VD4A 2VPDA 4UP5A 1FP0A 4GNFA 4O62A 4BHWA 5B78A 3L1ZB 5SVXA 5KH7A 2L80A 4TKPB 2ECTA 3SUBA 3DPLR 2VNFA 2KIZA 4B7YC 2K4DA 2YU4A 3GL6A 3SOXA 1WEUA 2KR4A 5LKTA 2DX8A 2G43A 2VP7A 2CSVA 2KWOA 3QZVA 4QF3A 5H9MA 2KGGA 5TBNA 4GNEA 2G45A 2ECVA 2RSDA 2CRRA 2MA5A 1WEWA 2OWAA 3LQJA 2MA6A 3O47A 5KH3A 4GNGA 3ZTGA 2CSZA 4MSXA 2YSJA 2D8SA 2CRWA 1Z6UA 3KQIA 5KH9A 2KFTA 2F6NA 2M6MA 2E6SA 2VJFA 5B77A 1RMDA 3DQVR 2YSMA 2JMJA 3FM8C 4AVXA 4B86C 4S3OB 3L11A 4Z0OA 2ECNA 3GV4A 4LADB 2KKYA 2E6RA 5D1KB 5JG6A 5H1VA 3Q1DA 2LAUA 2F42A 5SVIA 2VPBA 4L58A 5H1TA 1X4JA 2MUMA 2VJEA 4L7XA 3MDBC 3N9QA 3O7AA 3ZNIA 2JMDA 5LKZA 1WGMA 2RR4A 3MHSA 3NG2A 3RPGC 2MT5A 1VYXA 2IQJA 2IDAA 1JM7A 2FD4A 5LKXA 4IC2A 2XP0A 3JUEA 2KKXA 3ASLA 4FJCA 1U6GB 3ZVZB 2BAYA 2LV9A 2B0OE 4R8PK 4BBQA 4AP4A 4QQ4A 3DWDA 2K17A 4YC9A 3T6RA 3I2DA 5FERA 4I7BA 2KWNA 2K1JA 1WIMA 3HCSA 4AUQB 4YBMA 5D1LB 5B79A 2MIQA 1WENA 3EB5A 4F1PA 2ECJA 3RTRB 5AITA 4Q6FA 3O70A 3LQHA 2UZGA 1WEOA 4YBSA 3KNVA 4R2YA 4N3WA 2XEUA 2YQMA 2LGVA 2Y43A 2M13A 2MNZA 4ZUXU 2MD8C 4O64A 2HYED 2VJFB 3RPGB 4AYCA 2C2LA 5DKAA 1F62A 3DDTA 3KV6A 4PTBA 1G25A 4YATA 3O33A 4C9ZA 1JOCA 4CA1A
chains in the Genus database with same CATH topology
2XOYA 2P57A 3LVRE 3H7HA 3KDEC 5SVIB 3T9KA 2XP0A 3JUEA 2KKXA 2M13A 2D8UA 3FEHA 3LJUX 2JUNA 2DJAA 3MDBC 2YREA 2XOCA 4F1PA 2YVRA 2EXUA 2B0OE 2CONA 4H9DA 2CSVA 4OGEA 3FM8C 4QQ4A 2EGMA 5SVYA 2FFWA 3E2DA 3DWDA 3M7KA 4Z0OA 2CRRA 2JM3A 4O62A 5K3QA 2KKYA 2RR4A 2E61A 3LVQE 1DCQA 3DDTA 2OWAA 5SVXA 4Z0RA 3PLWA 4OGCA 3O47A 2IQJA 2L7PA 3SUBA 3Q1DA 2LAUA 5SVIA 2XOZA 3FJUB 2MKEA 2FD4A 3LDYA 2CRWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LVR E;  2P57 A;  3T9K A;  3JUE A;  3FEH A;  3LJU X;  3MDB C;  4F1P A;  2B0O E;  3FM8 C;  3DWD A;  2CRR A;  3LVQ E;  1DCQ A;  2OWA A;  3O47 A;  2IQJ A;  3SUB A;  2CRW A; 
#chains in the Genus database with same CATH topology
 4X3G A;  5SVI B;  4LKA A;  2ZET C;  3M62 A;  2KRE A;  1XWH A;  2H0D A;  2VPG A;  3U5P A;  2L5U A;  2VJE B;  1DVP A;  2EA6 A;  4H9D A;  2CON A;  2CKL A;  2EGM A;  4A4C A;  5DIN A;  4CCG X;  5C11 A;  1ZBD B;  2L0B A;  2ECW A;  5FB0 A;  3FJU B;  1JM7 B;  3LVR E;  1WE9 A;  2NAA A;  3LQI A;  3ZVY A;  4A0C D;  2D8U A;  4FK5 A;  5AIU A;  2LGL A;  1LDK C;  3U5M A;  2JM3 A;  5K3Q A;  3IHP A;  2G6Q A;  4GND A;  5H1U A;  1Z2Q A;  4ZQL A;  1HYI A;  2QIC A;  1MM2 A;  3KDE C;  2FSA A;  3T7L A;  2KYU A;  2MNY A;  4A4B A;  3HCT A;  2EXU A;  3KV5 A;  3V43 A;  2FFW A;  5I3L A;  4R7E A;  2DSM A;  5B76 A;  3FAN A;  1BOR A;  3PLW A;  2HDP A;  3SHB A;  3PUQ A;  2MD7 B;  2CT2 A;  3U5O A;  3VK6 A;  4IC3 A;  2PNX A;  2LGG A;  5G05 B;  3LJU X;  2DJA A;  5EYA F;  3EB6 A;  4F52 B;  3PHD A;  3U5N A;  2YVR A;  3HCU A;  2F6J A;  1MM3 A;  2L75 A;  2YUC A;  3N9P A;  4WZ2 A;  4XI1 A;  2M1R A;  5SVY A;  4UP0 A;  2LN0 A;  4FO9 A;  4AYC B;  3HTK C;  2K16 A;  3N9L A;  4LJN A;  3MHH A;  1CHC A;  1FBV A;  1WEQ A;  2LGK A;  2P57 A;  2YT5 A;  5J3X A;  2XB1 A;  3N9O A;  2ECG A;  2KE1 A;  2H0D B;  5LKU A;  3N9M A;  1N87 A;  2CKL B;  2YQL A;  1K2F A;  3C6W A;  2YHO A;  3LVQ E;  3FAO A;  3ZPV 1;  2L7P A;  2EOD A;  2YYR A;  2XOZ A;  4MVT A;  1IYM A;  3SOU A;  2KWK A;  3FL2 A;  4V3L C;  2JMI A;  1WFK A;  2C2V S;  3M99 A;  5G0F A;  1X4U A;  2YUR A;  2FUI A;  2L43 A;  2RI7 A;  4GB0 A;  2Y1N A;  4A49 A;  5B8D A;  1WIL A;  1HYJ A;  1E4U A;  3O34 A;  2LRI C;  2KGI A;  2AN6 A;  2EGP A;  3FEH A;  1MBM A;  2M85 A;  4WZ0 A;  4I7C A;  5TRB A;  3E2D A;  3M7K A;  1WEM A;  2LDR A;  3L1X A;  4Z0R A;  4OGC A;  2M3H A;  3LRQ A;  4NN2 A;  1X4I A;  3H7H A;  2FUU A;  2ECI A;  2QIZ A;  5FEY A;  2QJ0 A;  2JRJ A;  2YW8 A;  1T1H A;  2PUY A;  4OGE A;  4ZDT A;  3M63 A;  2OXQ C;  3ZPV E;  2E61 A;  4YAB A;  5G04 B;  3ZYQ A;  2LQ6 A;  5FB1 A;  5TDW A;  3PUR A;  2VPE A;  1LDJ B;  2XOY A;  5TDR A;  2LXP C;  4QF2 A;  4V3K C;  4YAD A;  5C13 A;  2LXH C;  2YHN A;  2YRE A;  4UI9 B;  3SOW A;  1WEE A;  3O37 A;  5TAB A;  4W4U A;  2I50 A;  1VFY A;  2Y1M A;  1WEV A;  2CSY A;  3O35 A;  2KWJ A;  1WEP A;  1DCQ A;  3O36 A;  4WA6 A;  4YBT A;  4LK9 A;  4I7D A;  4PPE A;  1WES A;  4LLB A;  4S3O C;  4WZ3 B;  2MKE A;  3LDY A;  3T9K A;  5D1M B;  5B75 A;  1Z60 A;  2JUN A;  3N9N A;  4N4F A;  4YAX A;  2XOC A;  4P5O B;  3C5K A;  1V87 A;  2KU3 A;  4FIP A;  5LCW B;  1VD4 A;  2VPD A;  4UP5 A;  1FP0 A;  4GNF A;  4O62 A;  4BHW A;  5B78 A;  3L1Z B;  5SVX A;  5KH7 A;  2L80 A;  4TKP B;  2ECT A;  3SUB A;  3DPL R;  2VNF A;  2KIZ A;  4B7Y C;  2K4D A;  2YU4 A;  3GL6 A;  3SOX A;  1WEU A;  2KR4 A;  5LKT A;  2DX8 A;  2G43 A;  2VP7 A;  2CSV A;  2KWO A;  3QZV A;  4QF3 A;  5H9M A;  2KGG A;  5TBN A;  4GNE A;  2G45 A;  2ECV A;  2RSD A;  2CRR A;  2MA5 A;  1WEW A;  2OWA A;  3LQJ A;  2MA6 A;  3O47 A;  5KH3 A;  4GNG A;  3ZTG A;  2CSZ A;  4MSX A;  2YSJ A;  2D8S A;  2CRW A;  1Z6U A;  3KQI A;  5KH9 A;  2KFT A;  2F6N A;  2M6M A;  2E6S A;  2VJF A;  5B77 A;  1RMD A;  3DQV R;  2YSM A;  2JMJ A;  3FM8 C;  4AVX A;  4B86 C;  4S3O B;  3L11 A;  4Z0O A;  2ECN A;  3GV4 A;  4LAD B;  2KKY A;  2E6R A;  5D1K B;  5JG6 A;  5H1V A;  3Q1D A;  2LAU A;  2F42 A;  5SVI A;  2VPB A;  4L58 A;  5H1T A;  1X4J A;  2MUM A;  2VJE A;  4L7X A;  3MDB C;  3N9Q A;  3O7A A;  3ZNI A;  2JMD A;  5LKZ A;  1WGM A;  2RR4 A;  3MHS A;  3NG2 A;  3RPG C;  2MT5 A;  1VYX A;  2IQJ A;  2IDA A;  1JM7 A;  2FD4 A;  5LKX A;  4IC2 A;  2XP0 A;  3JUE A;  2KKX A;  3ASL A;  4FJC A;  1U6G B;  3ZVZ B;  2BAY A;  2LV9 A;  2B0O E;  4R8P K;  4BBQ A;  4AP4 A;  4QQ4 A;  3DWD A;  2K17 A;  4YC9 A;  3T6R A;  3I2D A;  5FER A;  4I7B A;  2KWN A;  2K1J A;  1WIM A;  3HCS A;  4AUQ B;  4YBM A;  5D1L B;  5B79 A;  2MIQ A;  1WEN A;  3EB5 A;  4F1P A;  2ECJ A;  3RTR B;  5AIT A;  4Q6F A;  3O70 A;  3LQH A;  2UZG A;  1WEO A;  4YBS A;  3KNV A;  4R2Y A;  4N3W A;  2XEU A;  2YQM A;  2LGV A;  2Y43 A;  2M13 A;  2MNZ A;  4ZUX U;  2MD8 C;  4O64 A;  2HYE D;  2VJF B;  3RPG B;  4AYC A;  2C2L A;  5DKA A;  1F62 A;  3DDT A;  3KV6 A;  4PTB A;  1G25 A;  4YAT A;  3O33 A;  4C9Z A;  1JOC A;  4CA1 A; 
#chains in the Genus database with same CATH homology
 2XOY A;  2P57 A;  3LVR E;  3H7H A;  3KDE C;  5SVI B;  3T9K A;  2XP0 A;  3JUE A;  2KKX A;  2M13 A;  2D8U A;  3FEH A;  3LJU X;  2JUN A;  2DJA A;  3MDB C;  2YRE A;  2XOC A;  4F1P A;  2YVR A;  2EXU A;  2B0O E;  2CON A;  4H9D A;  2CSV A;  4OGE A;  3FM8 C;  4QQ4 A;  2EGM A;  5SVY A;  2FFW A;  3E2D A;  3DWD A;  3M7K A;  4Z0O A;  2CRR A;  2JM3 A;  4O62 A;  5K3Q A;  2KKY A;  2RR4 A;  2E61 A;  3LVQ E;  1DCQ A;  3DDT A;  2OWA A;  5SVX A;  4Z0R A;  3PLW A;  4OGC A;  3O47 A;  2IQJ A;  2L7P A;  3SUB A;  3Q1D A;  2LAU A;  5SVI A;  2XOZ A;  3FJU B;  2MKE A;  2FD4 A;  3LDY A;  2CRW A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...