3E0MA

Crystal structure of fusion protein of msra and msrb
Total Genus 90
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
90
sequence length
312
structure length
312
Chain Sequence
MAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKPLIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYKDLSHGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAKDEMEKAGYGYLLPYLNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Peptide methionine sulfoxide reductase msrA/msrB 1
publication title Structural and Kinetic Analysis of an MsrA-MsrB Fusion Protein from Streptococcus pneumoniae
pubmed doi rcsb
source organism Streptococcus pneumoniae
total genus 90
structure length 312
sequence length 312
chains with identical sequence B, C, D
ec nomenclature ec 1.8.4.11: Peptide-methionine (S)-S-oxide reductase.
pdb deposition date 2008-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01625 PMSR Peptide methionine sulfoxide reductase
A PF01641 SelR SelR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3e0mA02
3.30.1060.10 Alpha Beta 2-Layer Sandwich Peptide Methionine Sulfoxide Reductase; Chain A Peptide methionine sulphoxide reductase MsrA 3e0mA01
3PIMA 2J89A 3BQHA 3PINB 3CXKA 4LWLA 3HCHA 4TZUA 3MAOA 3PILA 3BQEA 3E0MA 2K8DA 3WX1A 1FF3A 2KV1A 2IEMA 3HCIA 4U66A 2KZNA 4V30A 3WX2A 1NWAA 4W8CA 4GWBA 4CI3B 1FVAA 4TZCA 3BQFA 4LWKA 1L1DA 4D7LA 3HCGA 3BQGA 3E0OA 4CI1B 4CI2B 4V2ZA 4LWMA 4LWJA 4V2YA 3CEZA 4TZ4C 4V31A 2L90A 3HCJA 1FVGA 5AMHA 2GT3A
chains in the Genus database with same CATH superfamily
2KWBA 2LVLA 3CXKA 5F98A 4LWLA 3HCHA 3NCUA 4A2XA 2KZNA 4V30A 2QFDA 1NWAA 3LRNA 4W8CA 2RQAA 4CI3B 4LWKA 4D7LA 1YZ1A 4LWMA 2RQBA 4A2VA 3PIMA 2J89A 3BQHA 3FACA 3PILA 3P3KA 3EBMA 3WX1A 3WX2A 4GWBA 3DJMA 1FVAA 3BQFA 3LRRA 2YKGA 1L1DA 3HCGA 3E0OA 1FWQA 4LWJA 3CEZA 3HCJA 5AMHA 2GT3A 3PINB 3GA3A 2HR9A 3MAOA 3ZD7A 3E0MA 2QFBA 2KV1A 1H7YA 3OG8A 1TXJA 2W4RA 4TZCA 2FU5A 3BQGA 3ZD6A 5F9HA 4CI1B 4CI2B 1H6QA 4V2ZA 4V2YA 4TZ4C 2LOYA 2L90A 3EQTA 4TZUA 4BPBA 3BQEA 1HXRA 2K8DA 1FF3A 2IEMA 3HCIA 4U66A 4AY2A 2RMJA 5F9FA 4V31A 5E3HA 1FVGA
chains in the Genus database with same CATH topology
3PIMA 2J89A 3BQHA 3PINB 3CXKA 4LWLA 3HCHA 4TZUA 3MAOA 3PILA 3BQEA 3E0MA 2K8DA 3WX1A 1FF3A 2KV1A 2IEMA 3HCIA 4U66A 2KZNA 4V30A 3WX2A 1NWAA 4W8CA 4GWBA 4CI3B 1FVAA 4TZCA 3BQFA 4LWKA 1L1DA 4D7LA 3HCGA 3BQGA 3E0OA 4CI1B 4CI2B 4V2ZA 4LWMA 4LWJA 4V2YA 3CEZA 4TZ4C 4V31A 2L90A 3HCJA 1FVGA 5AMHA 2GT3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIM A;  2J89 A;  3BQH A;  3PIN B;  3CXK A;  4LWL A;  3HCH A;  4TZU A;  3MAO A;  3PIL A;  3BQE A;  3E0M A;  2K8D A;  3WX1 A;  1FF3 A;  2KV1 A;  2IEM A;  3HCI A;  4U66 A;  2KZN A;  4V30 A;  3WX2 A;  1NWA A;  4W8C A;  4GWB A;  4CI3 B;  1FVA A;  4TZC A;  3BQF A;  4LWK A;  1L1D A;  4D7L A;  3HCG A;  3BQG A;  3E0O A;  4CI1 B;  4CI2 B;  4V2Z A;  4LWM A;  4LWJ A;  4V2Y A;  3CEZ A;  4TZ4 C;  4V31 A;  2L90 A;  3HCJ A;  1FVG A;  5AMH A;  2GT3 A; 
#chains in the Genus database with same CATH topology
 2KWB A;  2LVL A;  3CXK A;  5F98 A;  4LWL A;  3HCH A;  3NCU A;  4A2X A;  2KZN A;  4V30 A;  2QFD A;  1NWA A;  3LRN A;  4W8C A;  2RQA A;  4CI3 B;  4LWK A;  4D7L A;  1YZ1 A;  4LWM A;  2RQB A;  4A2V A;  3PIM A;  2J89 A;  3BQH A;  3FAC A;  3PIL A;  3P3K A;  3EBM A;  3WX1 A;  3WX2 A;  4GWB A;  3DJM A;  1FVA A;  3BQF A;  3LRR A;  2YKG A;  1L1D A;  3HCG A;  3E0O A;  1FWQ A;  4LWJ A;  3CEZ A;  3HCJ A;  5AMH A;  2GT3 A;  3PIN B;  3GA3 A;  2HR9 A;  3MAO A;  3ZD7 A;  3E0M A;  2QFB A;  2KV1 A;  1H7Y A;  3OG8 A;  1TXJ A;  2W4R A;  4TZC A;  2FU5 A;  3BQG A;  3ZD6 A;  5F9H A;  4CI1 B;  4CI2 B;  1H6Q A;  4V2Z A;  4V2Y A;  4TZ4 C;  2LOY A;  2L90 A;  3EQT A;  4TZU A;  4BPB A;  3BQE A;  1HXR A;  2K8D A;  1FF3 A;  2IEM A;  3HCI A;  4U66 A;  4AY2 A;  2RMJ A;  5F9F A;  4V31 A;  5E3H A;  1FVG A; 
#chains in the Genus database with same CATH homology
 3PIM A;  2J89 A;  3BQH A;  3PIN B;  3CXK A;  4LWL A;  3HCH A;  4TZU A;  3MAO A;  3PIL A;  3BQE A;  3E0M A;  2K8D A;  3WX1 A;  1FF3 A;  2KV1 A;  2IEM A;  3HCI A;  4U66 A;  2KZN A;  4V30 A;  3WX2 A;  1NWA A;  4W8C A;  4GWB A;  4CI3 B;  1FVA A;  4TZC A;  3BQF A;  4LWK A;  1L1D A;  4D7L A;  3HCG A;  3BQG A;  3E0O A;  4CI1 B;  4CI2 B;  4V2Z A;  4LWM A;  4LWJ A;  4V2Y A;  3CEZ A;  4TZ4 C;  4V31 A;  2L90 A;  3HCJ A;  1FVG A;  5AMH A;  2GT3 A; 
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