3ELVA

Crystal structure of full-length yeast pml1p
Total Genus 34
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
154
structure length
145
Chain Sequence
KHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFMNV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Splicing
molecule keywords Pre-mRNA leakage protein 1
publication title Crystal structure of the Pml1p subunit of the yeast precursor mRNA retention and splicing complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 34
structure length 145
sequence length 154
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00498 FHA FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3elvA00
5A8IA 3HUEA 2W3OA 1WLNA 1G6GA 3UNMA 3I0NA 3UOTA 1J4OA 3HX1A 3ELVA 1FHQA 1FHRA 1YJ5C 2JQIA 1YJMA 4D9VA 1J4KA 5E50A 1MZKA 2JKDA 2KKLA 2AFFA 2KB4A 3KT9A 1K3QA 2JQJA 1G3GA 2A0TA 4EGXA 2JQLA 3UMZA 2PIEA 3MDBA 2CSWA 3ELSA 1J4QA 3UN0A 1J4LA 1J4PA 3OUNA 3UV0A 4H87A 5DJOA 4G2SA 1LGPA 4JONA 1WV3A 3VA4A 2XT9B 1GXCA 4A0EA 3I0MA 2FF4A 3VA1A 3VPYA 1UHTA 2G1LA 1K2MA 2EH0A 3PO8A 1K3JA 1K2NA 2LC1A 1K3NA 3POAA 2KFUA 2KB3A 2BRFA 2JPEA 4QCJA 3I6WA 4EJQA 3FM8A 3HUFA 1DMZA 1QU5A 1LGQA 3UNNA 1R21A 2FEZA 3GQSA 1UJXA 3I6UA
chains in the Genus database with same CATH superfamily
5A8IA 5JEMA 3DITA 4JIWD 3HUEA 5EJFA 1U0TA 3PFNA 2W3OA 3VZBA 1WLNA 5JEOA 1G6GA 3UNMA 3I0NA 3UOTA 1J4OA 3HX1A 3ELVA 1FHQA 1FHRA 1YJ5C 2JQIA 3V8PA 4L02A 3V8MA 2P1RA 2I1WA 1YJMA 1Y3IA 4D9VA 3V8RA 1J4KA 5DHRA 5DHPA 2XXSA 2I2BA 3DSHA 5E50A 4WRRA 1KHXA 1MZKA 2JKDA 2KKLA 2JGRA 2AFFA 3S40A 3V7WA 2KB4A 3KT9A 3A77A 1K3QA 3VZDA 2JQJA 1G3GA 2A0TA 4EGXA 2JQLA 1DEVA 3UMZA 1J2FA 3VZCA 1SUWA 2PIEA 3AFOA 1KHUA 3MDBA 3V7YA 1Z0SA 2CSWA 4JIVD 1MJSA 3ELSA 1J4QA 3UN0A 1J4LA 1J4PA 3OUNA 3UV0A 4H87A 4WERA 5DJOA 4G2SA 1LGPA 1U0RA 4JONA 5DHQA 5C4VA 1YGSA 2I29A 1WV3A 1Z0UA 2AN1A 2I2AA 3VA4A 3GMJA 2I2FA 4R9PA 3V8NA 2XT9B 1GXCA 4A0EA 1U7FB 3I0MA 5JEKA 2FF4A 3VA1A 3VPYA 1UHTA 5DHTA 2G1LA 2QVLA 1Z0ZA 4HAOA 5JEJA 1DD1A 5BVIA 5EJGA 1K2MA 5EJIA 1U7FA 1U7VB 2EH0A 3PO8A 5DHUA 3V8QA 1ZOQA 2BONA 5JELA 4A4YA 1K3JA 1K2NA 2I2DA 2I2CA 2LC1A 1Y3HA 2Q5FA 1K3NA 3POAA 1U7VA 2KFUA 2KB3A 2BRFA 2JPEA 4QCJA 3I6WA 4EJQA 3FM8A 1YT5A 3HUFA 1DMZA 3V7UA 1MR1A 1MK2A 1QU5A 1LGQA 3UNNA 1QWTA 1R21A 2QV7A 4KU0D 3T5PA 2FEZA 4DY6A 1G88A 5JERA 3GQSA 4V24A 1UJXA 5DHSA 3I6UA 3V80A 5EJHA
chains in the Genus database with same CATH topology
5A8IA 5JEMA 3DITA 4JIWD 3HUEA 2W3OA 3VZBA 1WLNA 5JEOA 1G6GA 3UNMA 3I0NA 3UOTA 1J4OA 3HX1A 3ELVA 1FHQA 1FHRA 1YJ5C 2JQIA 4L02A 2P1RA 1YJMA 4D9VA 1J4KA 2XXSA 3DSHA 5E50A 4WRRA 1KHXA 1MZKA 2JKDA 2KKLA 2JGRA 2AFFA 3S40A 2KB4A 3KT9A 3A77A 1K3QA 3VZDA 2JQJA 1G3GA 2A0TA 4EGXA 2JQLA 1DEVA 3UMZA 1J2FA 3VZCA 2PIEA 1KHUA 3MDBA 2CSWA 4JIVD 1MJSA 3ELSA 1J4QA 3UN0A 1J4LA 1J4PA 3OUNA 3UV0A 4H87A 4WERA 5DJOA 4G2SA 1LGPA 4JONA 5C4VA 1YGSA 1WV3A 3VA4A 3GMJA 4R9PA 2XT9B 1GXCA 4A0EA 1U7FB 3I0MA 5JEKA 2FF4A 3VA1A 3VPYA 1UHTA 2G1LA 2QVLA 5JEJA 1DD1A 5BVIA 1K2MA 1U7FA 1U7VB 2EH0A 3PO8A 1ZOQA 2BONA 5JELA 4A4YA 1K3JA 1K2NA 2LC1A 1K3NA 3POAA 1U7VA 2KFUA 2KB3A 2BRFA 2JPEA 4QCJA 3I6WA 4EJQA 3FM8A 3HUFA 1DMZA 1MR1A 1MK2A 1QU5A 1LGQA 3UNNA 1QWTA 1R21A 2QV7A 4KU0D 3T5PA 2FEZA 1G88A 5JERA 3GQSA 4V24A 1UJXA 3I6UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A8I A;  3HUE A;  2W3O A;  1WLN A;  1G6G A;  3UNM A;  3I0N A;  3UOT A;  1J4O A;  3HX1 A;  3ELV A;  1FHQ A;  1FHR A;  1YJ5 C;  2JQI A;  1YJM A;  4D9V A;  1J4K A;  5E50 A;  1MZK A;  2JKD A;  2KKL A;  2AFF A;  2KB4 A;  3KT9 A;  1K3Q A;  2JQJ A;  1G3G A;  2A0T A;  4EGX A;  2JQL A;  3UMZ A;  2PIE A;  3MDB A;  2CSW A;  3ELS A;  1J4Q A;  3UN0 A;  1J4L A;  1J4P A;  3OUN A;  3UV0 A;  4H87 A;  5DJO A;  4G2S A;  1LGP A;  4JON A;  1WV3 A;  3VA4 A;  2XT9 B;  1GXC A;  4A0E A;  3I0M A;  2FF4 A;  3VA1 A;  3VPY A;  1UHT A;  2G1L A;  1K2M A;  2EH0 A;  3PO8 A;  1K3J A;  1K2N A;  2LC1 A;  1K3N A;  3POA A;  2KFU A;  2KB3 A;  2BRF A;  2JPE A;  4QCJ A;  3I6W A;  4EJQ A;  3FM8 A;  3HUF A;  1DMZ A;  1QU5 A;  1LGQ A;  3UNN A;  1R21 A;  2FEZ A;  3GQS A;  1UJX A;  3I6U A; 
#chains in the Genus database with same CATH topology
 5A8I A;  5JEM A;  3DIT A;  4JIW D;  3HUE A;  5EJF A;  1U0T A;  3PFN A;  2W3O A;  3VZB A;  1WLN A;  5JEO A;  1G6G A;  3UNM A;  3I0N A;  3UOT A;  1J4O A;  3HX1 A;  3ELV A;  1FHQ A;  1FHR A;  1YJ5 C;  2JQI A;  3V8P A;  4L02 A;  3V8M A;  2P1R A;  2I1W A;  1YJM A;  1Y3I A;  4D9V A;  3V8R A;  1J4K A;  5DHR A;  5DHP A;  2XXS A;  2I2B A;  3DSH A;  5E50 A;  4WRR A;  1KHX A;  1MZK A;  2JKD A;  2KKL A;  2JGR A;  2AFF A;  3S40 A;  3V7W A;  2KB4 A;  3KT9 A;  3A77 A;  1K3Q A;  3VZD A;  2JQJ A;  1G3G A;  2A0T A;  4EGX A;  2JQL A;  1DEV A;  3UMZ A;  1J2F A;  3VZC A;  1SUW A;  2PIE A;  3AFO A;  1KHU A;  3MDB A;  3V7Y A;  1Z0S A;  2CSW A;  4JIV D;  1MJS A;  3ELS A;  1J4Q A;  3UN0 A;  1J4L A;  1J4P A;  3OUN A;  3UV0 A;  4H87 A;  4WER A;  5DJO A;  4G2S A;  1LGP A;  1U0R A;  4JON A;  5DHQ A;  5C4V A;  1YGS A;  2I29 A;  1WV3 A;  1Z0U A;  2AN1 A;  2I2A A;  3VA4 A;  3GMJ A;  2I2F A;  4R9P A;  3V8N A;  2XT9 B;  1GXC A;  4A0E A;  1U7F B;  3I0M A;  5JEK A;  2FF4 A;  3VA1 A;  3VPY A;  1UHT A;  5DHT A;  2G1L A;  2QVL A;  1Z0Z A;  4HAO A;  5JEJ A;  1DD1 A;  5BVI A;  5EJG A;  1K2M A;  5EJI A;  1U7F A;  1U7V B;  2EH0 A;  3PO8 A;  5DHU A;  3V8Q A;  1ZOQ A;  2BON A;  5JEL A;  4A4Y A;  1K3J A;  1K2N A;  2I2D A;  2I2C A;  2LC1 A;  1Y3H A;  2Q5F A;  1K3N A;  3POA A;  1U7V A;  2KFU A;  2KB3 A;  2BRF A;  2JPE A;  4QCJ A;  3I6W A;  4EJQ A;  3FM8 A;  1YT5 A;  3HUF A;  1DMZ A;  3V7U A;  1MR1 A;  1MK2 A;  1QU5 A;  1LGQ A;  3UNN A;  1QWT A;  1R21 A;  2QV7 A;  4KU0 D;  3T5P A;  2FEZ A;  4DY6 A;  1G88 A;  5JER A;  3GQS A;  4V24 A;  1UJX A;  5DHS A;  3I6U A;  3V80 A;  5EJH A; 
#chains in the Genus database with same CATH homology
 5A8I A;  5JEM A;  3DIT A;  4JIW D;  3HUE A;  2W3O A;  3VZB A;  1WLN A;  5JEO A;  1G6G A;  3UNM A;  3I0N A;  3UOT A;  1J4O A;  3HX1 A;  3ELV A;  1FHQ A;  1FHR A;  1YJ5 C;  2JQI A;  4L02 A;  2P1R A;  1YJM A;  4D9V A;  1J4K A;  2XXS A;  3DSH A;  5E50 A;  4WRR A;  1KHX A;  1MZK A;  2JKD A;  2KKL A;  2JGR A;  2AFF A;  3S40 A;  2KB4 A;  3KT9 A;  3A77 A;  1K3Q A;  3VZD A;  2JQJ A;  1G3G A;  2A0T A;  4EGX A;  2JQL A;  1DEV A;  3UMZ A;  1J2F A;  3VZC A;  2PIE A;  1KHU A;  3MDB A;  2CSW A;  4JIV D;  1MJS A;  3ELS A;  1J4Q A;  3UN0 A;  1J4L A;  1J4P A;  3OUN A;  3UV0 A;  4H87 A;  4WER A;  5DJO A;  4G2S A;  1LGP A;  4JON A;  5C4V A;  1YGS A;  1WV3 A;  3VA4 A;  3GMJ A;  4R9P A;  2XT9 B;  1GXC A;  4A0E A;  1U7F B;  3I0M A;  5JEK A;  2FF4 A;  3VA1 A;  3VPY A;  1UHT A;  2G1L A;  2QVL A;  5JEJ A;  1DD1 A;  5BVI A;  1K2M A;  1U7F A;  1U7V B;  2EH0 A;  3PO8 A;  1ZOQ A;  2BON A;  5JEL A;  4A4Y A;  1K3J A;  1K2N A;  2LC1 A;  1K3N A;  3POA A;  1U7V A;  2KFU A;  2KB3 A;  2BRF A;  2JPE A;  4QCJ A;  3I6W A;  4EJQ A;  3FM8 A;  3HUF A;  1DMZ A;  1MR1 A;  1MK2 A;  1QU5 A;  1LGQ A;  3UNN A;  1QWT A;  1R21 A;  2QV7 A;  4KU0 D;  3T5P A;  2FEZ A;  1G88 A;  5JER A;  3GQS A;  4V24 A;  1UJX A;  3I6U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...