3EP3B

Human adometdc d174n mutant with no putrescine bound
Total Genus 6
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
63
structure length
54
Chain Sequence
HFFEGTEKLLEVWFSSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 6
structure length 54
sequence length 63
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 3ep3B01
3DZ2B 1I7CB 3DZ3B 3DZ5B 3EPBB 3DZ7B 3EPAB 3H0VB 1MHMB 3EP7B 1I72B 1JENB 3EP3B 3EP9B 1I7BB 3DZ6B 3EP4B 5TVOB 3H0WB 3EP8B 1I79B 3DZ4B 3EP5B 1I7MB 3EP6B
chains in the Genus database with same CATH superfamily
3HNPA 1DIHA 1VKOA 3DR3A 3PZBA 4MVJF 3RBVA 3ZDFA 1Q2XA 3FHLA 2EP7A 3KV3O 1ML3A 3NT4A 3WB9A 2GYYA 3LC7O 4CLQA 1EBUA 4L8VA 4LGVA 5JW6A 4QX6A 4PG6A 4F3YA 1TB4A 2POQX 2X0NA 4INAA 3DZ2B 1RYDA 3DZ3B 1J0XO 1NWHA 2VYVA 3E82A 3EC7A 1MHMB 4DBVO 1GD1O 3QVXA 1PQUA 5J9GA 4R54A 3DAPA 3EP3B 2DC1A 3K2BA 1XYGA 3WYCA 2H63A 1H94A 3WGOA 2GZ2A 2O48X 3H0WB 1DC5A 1PS8A 3DOCA 2EP5A 1NQ5A 2HKIA 3IDSA 3GNQA 4ZHSA 3NTRA 3PWKA 4R3NA 4GPD1 1HDGO 1I72B 3WGZA 3BTSA 4EW6A 3STHA 2FPNA 1P1KA 1T4BA 3KSZO 4LSMA 4YWJA 3FD8A 3L4SO 1GL3A 4R51A 3LVFO 4MVJG 4XR4A 2OZPA 5EIOA 1U8FO 3MOIA 1ZH8A 2PKRA 4TVBA 3QVTA 1CRWG 2NQTA 1DBVO 3DBVO 3TUTA 3U3XA 4XRGA 1LC3A 1TA4A 5C7IO 3M2TA 3CMCO 1VSUA 3HQ4O 3RC9A 3LC2O 3HJAA 4KOAA 3UW3A 1OFGA 1QMHA 4GMGA 4MVJD 4L9RA 1DRVA 3OA0A 5JYEA 3CINA 5DDIP 4R4JA 1JENB 3HSKA 1DPGA 5EESA 1JN0A 3QW2A 1E77A 1A7KA 2X5JO 3WBBA 4AK1A 5EINA 2BHLA 1H6BA 1BRMA 1GYQA 3CPSA 4XQGA 4Z0HO 3EP5B 1IHXA 4O59O 3IP3A 1RM0A 3QY9A 4DPKA 3QVWA 3IWCB 3K73O 4MJLA 4LRSB 4N54A 4ZICA 1K3TA 3INGA 2CVOA 1H6CA 2GZ3A 1LA2A 3NTOA 3DTYA 2AXQA 1LC0A 5TVOB 1DC3A 3JSAA 3BTUA 1T4DA 1TVEA 1P1IA 1I79B 3C8MA 5GZ3A 1YWGO 1EBFA 4PG7A 1MC4A 3DMTC 4MINA 1H6DA 3IJPA 4O63O 1VC2A 4K9DA 1DAPA 1ARZA 1UYJA 3EVNA 2R00C 4WNIA 4HKTA 5GZ6A 4XQEA 1GR0A 4PG8A 1NWCA 3BIOA 1VM6A 3GFGA 3EP6B 3RC1A 3MTJA 1YDWA 3WBFA 5AQ1A 4MVJH 3WGYA 3I23A 1U1IA 1XEAA 1NX6A 1PQPA 5A06A 1RM4A 2Q22A 1GPDG 1E7YA 1OBFO 1ZNQO 3NTQA 3PFWO 4BOYA 5GZ1A 4MVJA 5A05A 3B1JA 1I32A 5KVQA 3RC2A 4XQCA 3HXLA 2HO5A 1H6AA 1CF2O 3EPBB 4PG5A 4R3WA 4R41A 3EPAB 2GZ1A 3L0DA 3UUWA 5JY6A 4GMFA 4DPLA 1C3VA 4PG4A 3WYBA 1P1JA 3OQBA 4LRTB 3PYMA 3H9EO 3PYXA 1QKIA 1GCUA 2PKQO 2GLXA 1NQOA 2PH5A 2YV3A 3PQVA 3ZCXA 3IWDB 4FB5A 3DMTA 3DZ4B 1J5PA 1PU2A 1I7CB 3KSDO 3Q1LA 4WOJA 3OA2A 3E5RA 2EJWA 2G82A 1E7MA 3EP7B 1JKFA 2IXBA 3EUWA 1E5QA 3O9ZA 3ZJXA 1YL7A 4YDRA 1H93A 2NVWA 2D2IA 4IQ0A 2BH9A 1H2HA 3ABIA 3NT2A 2DUUA 2VYNA 3KGDA 4NHEA 3WGQA 1DC6A 4O8JA 3KUXA 1CERA 4PLPA 5BNTA 3DO5A 2GD1O 4IQ8A 3L6OO 4MVJE 2HJSA 1I33A 3TZ6A 4DPMA 5JYAA 3MZ0A 2DAPA 1GAEO 3E18A 3Q2IA 1DSSG 3PWSA 1Q7GA 3V5NA 4HADA 3TV1A 2G17A 3K9QO 2CZCA 4MIYA 3EP8B 1NVMB 1TLTA 4R5HA 4XB2A 5JYFA 5AVOA 3E1KA 1B7GO 3DZ5B 4MVJP 1QXSA 3TUXA 1E5LA 1YS4A 2DBVO 4MVJM 5M6DA 3IWBB 2Q49A 4JN6B 3EP9B 1I7BB 1DC4A 3DZ6B 3Q0EA 2VYND 3C1AA 4MKXA 2B4TO 1RYEA 4WNCA 4XQ9A 3CIFA 1VSVA 1RM3A 2DPGA 3PZRA 3QVSA 4XB1A 3BTVA 5CEFA 4O89A 4MIEA 3VOSA 2X5KO 3Q11A 2QZ9A 4H3VA 1NBOA 3QV1A 3B1KA 3EZYA 4RL6A 1VKNA 5A04A 2P2SA 5EERA 1JKIA 2Q4EA 1RM5A 3LC1O 3NT5A 3RVDA 4MIOA 1I7MB 5A03A 3E9MA 3VAZA 1FF9A 1EVJA 3RC7A 2IXAA 5A02A 3V1YA 1H9AA 5C7OO 1PR3A 1YL5A 4MKZA 1GADO 3RCBA 1F06A 1P9LA 1SZJG 2VYVD 1P1HA 2O4UX 3OHSX 4R5MA 1MB4A 2PKQP 3DZ7B 2XF8A 2B4RO 4P8RA 3GPDG 1YL6A 2YYYA 5T73A 2I3AA 2R00A 1P1FA 1IHYA 3EP4B 3F4LA 1DRWA 4II7A 3DB2A 1GYPA 1OZAA 2I3GA 5C7LO 3V2UA 3H0VB 3B20A 4GQAA 1QMIA 1S7CA 1DRUA 1H9BA 3TW3A 4DIBA 3Q2KA 5KVSA 4MVJI 1NPTO 3E6AA 1NQAO 3GDOA 2I5PO 3PYLA 3CEAA
chains in the Genus database with same CATH topology
3DZ2B 1I7CB 1MHMA 3DZ3B 3DZ5B 3EPBB 3H0VA 3DZ7B 3EPAB 3H0VB 1MHMB 3EP7A 1I72A 3EP9A 1I7BA 1JENA 3EP3A 3EPAA 3DZ6A 3EP4A 1I72B 1MSVA 3EP7B 1JENB 3EP3B 3EP9B 1I7BB 3DZ6B 1TLUA 3EP4B 5TVOA 3H0WA 1JL0A 3EP8A 1TMIA 5TVOB 3H0WB 1VR7A 1I79A 3DZ4A 1I7MA 3EP8B 3EP5A 3EP6A 1I79B 3DZ5A 2IIIA 3DZ3A 1I7CA 3DZ2A 3DZ4B 3EP5B 1I7MB 3EPBA 3DZ7A 3EP6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DZ2 B;  1I7C B;  3DZ3 B;  3DZ5 B;  3EPB B;  3DZ7 B;  3EPA B;  3H0V B;  1MHM B;  3EP7 B;  1I72 B;  1JEN B;  3EP3 B;  3EP9 B;  1I7B B;  3DZ6 B;  3EP4 B;  5TVO B;  3H0W B;  3EP8 B;  1I79 B;  3DZ4 B;  3EP5 B;  1I7M B;  3EP6 B; 
#chains in the Genus database with same CATH topology
 3HNP A;  1DIH A;  1VKO A;  3DR3 A;  3PZB A;  4MVJ F;  3RBV A;  3ZDF A;  1Q2X A;  3FHL A;  2EP7 A;  3KV3 O;  1ML3 A;  3NT4 A;  3WB9 A;  2GYY A;  3LC7 O;  4CLQ A;  1EBU A;  4L8V A;  4LGV A;  5JW6 A;  4QX6 A;  4PG6 A;  4F3Y A;  1TB4 A;  2POQ X;  2X0N A;  4INA A;  3DZ2 B;  1RYD A;  3DZ3 B;  1J0X O;  1NWH A;  2VYV A;  3E82 A;  3EC7 A;  1MHM B;  4DBV O;  1GD1 O;  3QVX A;  1PQU A;  5J9G A;  4R54 A;  3DAP A;  3EP3 B;  2DC1 A;  3K2B A;  1XYG A;  3WYC A;  2H63 A;  1H94 A;  3WGO A;  2GZ2 A;  2O48 X;  3H0W B;  1DC5 A;  1PS8 A;  3DOC A;  2EP5 A;  1NQ5 A;  2HKI A;  3IDS A;  3GNQ A;  4ZHS A;  3NTR A;  3PWK A;  4R3N A;  4GPD 1;  1HDG O;  1I72 B;  3WGZ A;  3BTS A;  4EW6 A;  3STH A;  2FPN A;  1P1K A;  1T4B A;  3KSZ O;  4LSM A;  4YWJ A;  3FD8 A;  3L4S O;  1GL3 A;  4R51 A;  3LVF O;  4MVJ G;  4XR4 A;  2OZP A;  5EIO A;  1U8F O;  3MOI A;  1ZH8 A;  2PKR A;  4TVB A;  3QVT A;  1CRW G;  2NQT A;  1DBV O;  3DBV O;  3TUT A;  3U3X A;  4XRG A;  1LC3 A;  1TA4 A;  5C7I O;  3M2T A;  3CMC O;  1VSU A;  3HQ4 O;  3RC9 A;  3LC2 O;  3HJA A;  4KOA A;  3UW3 A;  1OFG A;  1QMH A;  4GMG A;  4MVJ D;  4L9R A;  1DRV A;  3OA0 A;  5JYE A;  3CIN A;  5DDI P;  4R4J A;  1JEN B;  3HSK A;  1DPG A;  5EES A;  1JN0 A;  3QW2 A;  1E77 A;  1A7K A;  2X5J O;  3WBB A;  4AK1 A;  5EIN A;  2BHL A;  1H6B A;  1BRM A;  1GYQ A;  3CPS A;  4XQG A;  4Z0H O;  3EP5 B;  1IHX A;  4O59 O;  3IP3 A;  1RM0 A;  3QY9 A;  4DPK A;  3QVW A;  3IWC B;  3K73 O;  4MJL A;  4LRS B;  4N54 A;  4ZIC A;  1K3T A;  3ING A;  2CVO A;  1H6C A;  2GZ3 A;  1LA2 A;  3NTO A;  3DTY A;  2AXQ A;  1LC0 A;  5TVO B;  1DC3 A;  3JSA A;  3BTU A;  1T4D A;  1TVE A;  1P1I A;  1I79 B;  3C8M A;  5GZ3 A;  1YWG O;  1EBF A;  4PG7 A;  1MC4 A;  3DMT C;  4MIN A;  1H6D A;  3IJP A;  4O63 O;  1VC2 A;  4K9D A;  1DAP A;  1ARZ A;  1UYJ A;  3EVN A;  2R00 C;  4WNI A;  4HKT A;  5GZ6 A;  4XQE A;  1GR0 A;  4PG8 A;  1NWC A;  3BIO A;  1VM6 A;  3GFG A;  3EP6 B;  3RC1 A;  3MTJ A;  1YDW A;  3WBF A;  5AQ1 A;  4MVJ H;  3WGY A;  3I23 A;  1U1I A;  1XEA A;  1NX6 A;  1PQP A;  5A06 A;  1RM4 A;  2Q22 A;  1GPD G;  1E7Y A;  1OBF O;  1ZNQ O;  3NTQ A;  3PFW O;  4BOY A;  5GZ1 A;  4MVJ A;  5A05 A;  3B1J A;  1I32 A;  5KVQ A;  3RC2 A;  4XQC A;  3HXL A;  2HO5 A;  1H6A A;  1CF2 O;  3EPB B;  4PG5 A;  4R3W A;  4R41 A;  3EPA B;  2GZ1 A;  3L0D A;  3UUW A;  5JY6 A;  4GMF A;  4DPL A;  1C3V A;  4PG4 A;  3WYB A;  1P1J A;  3OQB A;  4LRT B;  3PYM A;  3H9E O;  3PYX A;  1QKI A;  1GCU A;  2PKQ O;  2GLX A;  1NQO A;  2PH5 A;  2YV3 A;  3PQV A;  3ZCX A;  3IWD B;  4FB5 A;  3DMT A;  3DZ4 B;  1J5P A;  1PU2 A;  1I7C B;  3KSD O;  3Q1L A;  4WOJ A;  3OA2 A;  3E5R A;  2EJW A;  2G82 A;  1E7M A;  3EP7 B;  1JKF A;  2IXB A;  3EUW A;  1E5Q A;  3O9Z A;  3ZJX A;  1YL7 A;  4YDR A;  1H93 A;  2NVW A;  2D2I A;  4IQ0 A;  2BH9 A;  1H2H A;  3ABI A;  3NT2 A;  2DUU A;  2VYN A;  3KGD A;  4NHE A;  3WGQ A;  1DC6 A;  4O8J A;  3KUX A;  1CER A;  4PLP A;  5BNT A;  3DO5 A;  2GD1 O;  4IQ8 A;  3L6O O;  4MVJ E;  2HJS A;  1I33 A;  3TZ6 A;  4DPM A;  5JYA A;  3MZ0 A;  2DAP A;  1GAE O;  3E18 A;  3Q2I A;  1DSS G;  3PWS A;  1Q7G A;  3V5N A;  4HAD A;  3TV1 A;  2G17 A;  3K9Q O;  2CZC A;  4MIY A;  3EP8 B;  1NVM B;  1TLT A;  4R5H A;  4XB2 A;  5JYF A;  5AVO A;  3E1K A;  1B7G O;  3DZ5 B;  4MVJ P;  1QXS A;  3TUX A;  1E5L A;  1YS4 A;  2DBV O;  4MVJ M;  5M6D A;  3IWB B;  2Q49 A;  4JN6 B;  3EP9 B;  1I7B B;  1DC4 A;  3DZ6 B;  3Q0E A;  2VYN D;  3C1A A;  4MKX A;  2B4T O;  1RYE A;  4WNC A;  4XQ9 A;  3CIF A;  1VSV A;  1RM3 A;  2DPG A;  3PZR A;  3QVS A;  4XB1 A;  3BTV A;  5CEF A;  4O89 A;  4MIE A;  3VOS A;  2X5K O;  3Q11 A;  2QZ9 A;  4H3V A;  1NBO A;  3QV1 A;  3B1K A;  3EZY A;  4RL6 A;  1VKN A;  5A04 A;  2P2S A;  5EER A;  1JKI A;  2Q4E A;  1RM5 A;  3LC1 O;  3NT5 A;  3RVD A;  4MIO A;  1I7M B;  5A03 A;  3E9M A;  3VAZ A;  1FF9 A;  1EVJ A;  3RC7 A;  2IXA A;  5A02 A;  3V1Y A;  1H9A A;  5C7O O;  1PR3 A;  1YL5 A;  4MKZ A;  1GAD O;  3RCB A;  1F06 A;  1P9L A;  1SZJ G;  2VYV D;  1P1H A;  2O4U X;  3OHS X;  4R5M A;  1MB4 A;  2PKQ P;  3DZ7 B;  2XF8 A;  2B4R O;  4P8R A;  3GPD G;  1YL6 A;  2YYY A;  5T73 A;  2I3A A;  2R00 A;  1P1F A;  1IHY A;  3EP4 B;  3F4L A;  1DRW A;  4II7 A;  3DB2 A;  1GYP A;  1OZA A;  2I3G A;  5C7L O;  3V2U A;  3H0V B;  3B20 A;  4GQA A;  1QMI A;  1S7C A;  1DRU A;  1H9B A;  3TW3 A;  4DIB A;  3Q2K A;  5KVS A;  4MVJ I;  1NPT O;  3E6A A;  1NQA O;  3GDO A;  2I5P O;  3PYL A;  3CEA A; 
#chains in the Genus database with same CATH homology
 3DZ2 B;  1I7C B;  1MHM A;  3DZ3 B;  3DZ5 B;  3EPB B;  3H0V A;  3DZ7 B;  3EPA B;  3H0V B;  1MHM B;  3EP7 A;  1I72 A;  3EP9 A;  1I7B A;  1JEN A;  3EP3 A;  3EPA A;  3DZ6 A;  3EP4 A;  1I72 B;  1MSV A;  3EP7 B;  1JEN B;  3EP3 B;  3EP9 B;  1I7B B;  3DZ6 B;  1TLU A;  3EP4 B;  5TVO A;  3H0W A;  1JL0 A;  3EP8 A;  1TMI A;  5TVO B;  3H0W B;  1VR7 A;  1I79 A;  3DZ4 A;  1I7M A;  3EP8 B;  3EP5 A;  3EP6 A;  1I79 B;  3DZ5 A;  2III A;  3DZ3 A;  1I7C A;  3DZ2 A;  3DZ4 B;  3EP5 B;  1I7M B;  3EPB A;  3DZ7 A;  3EP6 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...