3EP9B

Human adometdc with no putrescine bound
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
63
structure length
56
Chain Sequence
HFFEGTEKLLEVWFSQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 8
structure length 56
sequence length 63
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 3ep9B01
3DZ2B 1I7MB 3DZ6B 3EP9B 3EPAB 3EP6B 1I7CB 3DZ5B 3EP3B 5TVOB 3H0WB 3DZ3B 1I79B 3H0VB 3EP5B 1JENB 1I72B 3EP7B 3EP8B 1MHMB 3EP4B 1I7BB 3EPBB 3DZ4B 3DZ7B
chains in the Genus database with same CATH superfamily
2AXQA 2GYYA 1NQAO 3DZ6B 3HQ4O 2DUUA 1NX6A 2NVWA 3PZRA 3OHSX 2BHLA 3PFWO 2P2SA 1DBVO 3OA0A 3KUXA 4MVJG 1VSUA 4DPKA 1P1IA 4R5MA 1DPGA 2IXBA 2X5JO 3NT5A 1C3VA 1SZJG 3EP8B 5DDIP 1FF9A 1I33A 2Q22A 4PG8A 3V2UA 1RYEA 3HNPA 3EPAB 1XYGA 2HO5A 3OQBA 5JYEA 1H94A 4R3NA 1GD1O 4O63O 4YDRA 3WB9A 4MVJM 1F06A 3QVSA 3JSAA 5A05A 2HKIA 1LA2A 5M6DA 1P9LA 2B4RO 5CEFA 4GMFA 1JKFA 3DOCA 1NQ5A 1NWCA 2OZPA 3WBBA 1PR3A 3TUTA 3EZYA 1H6DA 1ZNQO 1BRMA 3BTVA 3B1JA 3OA2A 5EERA 4GQAA 5A02A 1GADO 2G17A 3QY9A 2CZCA 4N54A 4O89A 4ZHSA 4XQ9A 1UYJA 1VKOA 1MHMB 3CMCO 1NBOA 3CINA 3PWSA 3V5NA 3L4SO 2GZ2A 1ML3A 1NQOA 5KVSA 3RC1A 2HJSA 1NVMB 4DBVO 4DPMA 4JN6B 3E5RA 3KGDA 5GZ6A 3EP9B 4Z0HO 3Q2KA 1GCUA 3TUXA 1P1FA 1VC2A 3WGYA 1YL6A 1DRWA 4P8RA 4XQCA 2IXAA 4MINA 3WBFA 3EP4B 4NHEA 4PG5A 3LC7O 5C7IO 5JW6A 3EPBB 4PG6A 3K2BA 1RM5A 1OFGA 1DRUA 4H3VA 5C7OO 1B7GO 4DIBA 5GZ1A 2I3AA 4L8VA 4XB1A 3EVNA 5A04A 4PG4A 2X5KO 1H6AA 3TZ6A 5EESA 4MJLA 1A7KA 1I32A 3V1YA 1E5QA 2YYYA 3E82A 3VAZA 3LC2O 1I7MB 4CLQA 1E77A 3TW3A 2PH5A 1GYPA 4XB2A 5AVOA 3L6OO 4WOJA 4F3YA 2QZ9A 4MVJF 4PG7A 3IWBB 1E7MA 5AQ1A 3B1KA 4IQ8A 3DAPA 1E5LA 4INAA 1U8FO 4II7A 3CIFA 2VYND 5C7LO 3VOSA 1ARZA 3ZDFA 1VSVA 3H9EO 1K3TA 1LC3A 3RBVA 4R5HA 3DZ2B 2G82A 3U3XA 1QMIA 2R00A 3I23A 4MIYA 4O8JA 1DC4A 4YWJA 2PKQO 2GZ3A 3L0DA 3PZBA 1LC0A 4MVJH 3EP5B 3INGA 3GNQA 1P1KA 1GYQA 1RYDA 2DPGA 5JYFA 5J9GA 4RL6A 2DBVO 1TVEA 1JKIA 1YL7A 4GPD1 2VYNA 3DMTA 3EUWA 3DO5A 1RM4A 4XRGA 3DZ5B 4MVJD 3WYBA 3NTQA 2POQX 1YL5A 1QMHA 4MVJP 4WNCA 4DPLA 1XEAA 3ZJXA 3DZ4B 4MIOA 3HXLA 3QV1A 3DR3A 3QVTA 4XQGA 1NWHA 1E7YA 3RCBA 2I5PO 2PKRA 1NPTO 4EW6A 3FHLA 1I7CB 3DTYA 3MOIA 4XQEA 2EP5A 5JY6A 5EINA 1EBUA 4GMGA 3UW3A 3EP7B 2BH9A 1J0XO 3Q1LA 1DSSG 1YDWA 5EIOA 3MZ0A 1P1HA 1DC6A 5A03A 1IHYA 3NT4A 3EP6B 3DBVO 1DC5A 3PQVA 3EP3B 1I79B 2GLXA 3GFGA 1PS8A 4IQ0A 3QW2A 3ABIA 5JYAA 3WGOA 1H9BA 3B20A 4O59O 1HDGO 3C8MA 4MKXA 1Q2XA 1GPDG 1DRVA 3DB2A 1U1IA 1CRWG 1EBFA 1P1JA 1DIHA 3KSZO 4TVBA 2DAPA 3QVXA 5GZ3A 3DZ3B 1H2HA 2GD1O 3PYLA 1MC4A 1H6BA 1OBFO 4R41A 2XF8A 3CPSA 2R00C 4LRSB 1ZH8A 3E18A 2YV3A 4R51A 3M2TA 1T4BA 1GAEO 2X0NA 4LSMA 3KV3O 4BOYA 3STHA 3F4LA 1VKNA 1Q7GA 2GZ1A 3TV1A 1RM0A 1CF2O 2DC1A 5TVOB 5A06A 2O48X 1GL3A 2NQTA 1PQPA 1PQUA 5T73A 1TLTA 3K9QO 4PLPA 3DMTC 3MTJA 3Q11A 1H6CA 3WGZA 3UUWA 1RM3A 5BNTA 3PWKA 3E6AA 3Q2IA 3EC7A 4MVJE 1YS4A 4LRTB 3FD8A 3LVFO 3RC2A 3H0VB 3C1AA 1JENB 1QXSA 1I72B 1DC3A 4L9RA 1H93A 4MKZA 4HADA 3Q0EA 1I7BB 4WNIA 1J5PA 1IHXA 4AK1A 4R54A 4XR4A 2VYVD 3GPDG 3PYMA 3NTRA 1PU2A 3IDSA 4R3WA 1DAPA 2EJWA 3H0WB 3NTOA 3GDOA 3RC7A 4K9DA 4ZICA 2FPNA 2I3GA 3O9ZA 4HKTA 1CERA 2EP7A 4MVJA 2B4TO 3K73O 1S7CA 2D2IA 4QX6A 3BTSA 3IP3A 3QVWA 1EVJA 3CEAA 2O4UX 2Q4EA 4MVJI 5KVQA 3WGQA 1QKIA 3HJAA 1T4DA 2H63A 2VYVA 3BIOA 3HSKA 4FB5A 1TA4A 4MIEA 3E1KA 3KSDO 4LGVA 1MB4A 3DZ7B 3RC9A 3IWDB 3E9MA 3IJPA 3BTUA 3NT2A 3IWCB 4R4JA 1OZAA 1GR0A 1JN0A 1TB4A 3PYXA 2Q49A 3ZCXA 3WYCA 1YWGO 1H9AA 4KOAA 2PKQP 1VM6A 3RVDA 2CVOA 3LC1O
chains in the Genus database with same CATH topology
1MHMA 3EP4A 3DZ2B 1I7BA 3EPBA 1I7MB 3DZ4A 3DZ6B 1TMIA 3DZ7A 3DZ2A 3EP9B 1JL0A 3EPAB 1I7MA 3DZ6A 3EP6B 1I7CB 3DZ5B 3EP3B 3EP9A 2IIIA 5TVOB 3EPAA 3H0WB 3DZ3B 1I79B 3H0VB 3EP5B 3EP6A 1I7CA 3DZ5A 3EP3A 1JENB 5TVOA 1I72B 3EP7B 1VR7A 3EP8B 3H0WA 3H0VA 3DZ3A 1I79A 1MHMB 3EP5A 3EP4B 1I7BB 3EPBB 1JENA 1I72A 3DZ4B 3EP7A 3EP8A 1TLUA 1MSVA 3DZ7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DZ2 B;  1I7M B;  3DZ6 B;  3EP9 B;  3EPA B;  3EP6 B;  1I7C B;  3DZ5 B;  3EP3 B;  5TVO B;  3H0W B;  3DZ3 B;  1I79 B;  3H0V B;  3EP5 B;  1JEN B;  1I72 B;  3EP7 B;  3EP8 B;  1MHM B;  3EP4 B;  1I7B B;  3EPB B;  3DZ4 B;  3DZ7 B; 
#chains in the Genus database with same CATH topology
 2AXQ A;  2GYY A;  1NQA O;  3DZ6 B;  3HQ4 O;  2DUU A;  1NX6 A;  2NVW A;  3PZR A;  3OHS X;  2BHL A;  3PFW O;  2P2S A;  1DBV O;  3OA0 A;  3KUX A;  4MVJ G;  1VSU A;  4DPK A;  1P1I A;  4R5M A;  1DPG A;  2IXB A;  2X5J O;  3NT5 A;  1C3V A;  1SZJ G;  3EP8 B;  5DDI P;  1FF9 A;  1I33 A;  2Q22 A;  4PG8 A;  3V2U A;  1RYE A;  3HNP A;  3EPA B;  1XYG A;  2HO5 A;  3OQB A;  5JYE A;  1H94 A;  4R3N A;  1GD1 O;  4O63 O;  4YDR A;  3WB9 A;  4MVJ M;  1F06 A;  3QVS A;  3JSA A;  5A05 A;  2HKI A;  1LA2 A;  5M6D A;  1P9L A;  2B4R O;  5CEF A;  4GMF A;  1JKF A;  3DOC A;  1NQ5 A;  1NWC A;  2OZP A;  3WBB A;  1PR3 A;  3TUT A;  3EZY A;  1H6D A;  1ZNQ O;  1BRM A;  3BTV A;  3B1J A;  3OA2 A;  5EER A;  4GQA A;  5A02 A;  1GAD O;  2G17 A;  3QY9 A;  2CZC A;  4N54 A;  4O89 A;  4ZHS A;  4XQ9 A;  1UYJ A;  1VKO A;  1MHM B;  3CMC O;  1NBO A;  3CIN A;  3PWS A;  3V5N A;  3L4S O;  2GZ2 A;  1ML3 A;  1NQO A;  5KVS A;  3RC1 A;  2HJS A;  1NVM B;  4DBV O;  4DPM A;  4JN6 B;  3E5R A;  3KGD A;  5GZ6 A;  3EP9 B;  4Z0H O;  3Q2K A;  1GCU A;  3TUX A;  1P1F A;  1VC2 A;  3WGY A;  1YL6 A;  1DRW A;  4P8R A;  4XQC A;  2IXA A;  4MIN A;  3WBF A;  3EP4 B;  4NHE A;  4PG5 A;  3LC7 O;  5C7I O;  5JW6 A;  3EPB B;  4PG6 A;  3K2B A;  1RM5 A;  1OFG A;  1DRU A;  4H3V A;  5C7O O;  1B7G O;  4DIB A;  5GZ1 A;  2I3A A;  4L8V A;  4XB1 A;  3EVN A;  5A04 A;  4PG4 A;  2X5K O;  1H6A A;  3TZ6 A;  5EES A;  4MJL A;  1A7K A;  1I32 A;  3V1Y A;  1E5Q A;  2YYY A;  3E82 A;  3VAZ A;  3LC2 O;  1I7M B;  4CLQ A;  1E77 A;  3TW3 A;  2PH5 A;  1GYP A;  4XB2 A;  5AVO A;  3L6O O;  4WOJ A;  4F3Y A;  2QZ9 A;  4MVJ F;  4PG7 A;  3IWB B;  1E7M A;  5AQ1 A;  3B1K A;  4IQ8 A;  3DAP A;  1E5L A;  4INA A;  1U8F O;  4II7 A;  3CIF A;  2VYN D;  5C7L O;  3VOS A;  1ARZ A;  3ZDF A;  1VSV A;  3H9E O;  1K3T A;  1LC3 A;  3RBV A;  4R5H A;  3DZ2 B;  2G82 A;  3U3X A;  1QMI A;  2R00 A;  3I23 A;  4MIY A;  4O8J A;  1DC4 A;  4YWJ A;  2PKQ O;  2GZ3 A;  3L0D A;  3PZB A;  1LC0 A;  4MVJ H;  3EP5 B;  3ING A;  3GNQ A;  1P1K A;  1GYQ A;  1RYD A;  2DPG A;  5JYF A;  5J9G A;  4RL6 A;  2DBV O;  1TVE A;  1JKI A;  1YL7 A;  4GPD 1;  2VYN A;  3DMT A;  3EUW A;  3DO5 A;  1RM4 A;  4XRG A;  3DZ5 B;  4MVJ D;  3WYB A;  3NTQ A;  2POQ X;  1YL5 A;  1QMH A;  4MVJ P;  4WNC A;  4DPL A;  1XEA A;  3ZJX A;  3DZ4 B;  4MIO A;  3HXL A;  3QV1 A;  3DR3 A;  3QVT A;  4XQG A;  1NWH A;  1E7Y A;  3RCB A;  2I5P O;  2PKR A;  1NPT O;  4EW6 A;  3FHL A;  1I7C B;  3DTY A;  3MOI A;  4XQE A;  2EP5 A;  5JY6 A;  5EIN A;  1EBU A;  4GMG A;  3UW3 A;  3EP7 B;  2BH9 A;  1J0X O;  3Q1L A;  1DSS G;  1YDW A;  5EIO A;  3MZ0 A;  1P1H A;  1DC6 A;  5A03 A;  1IHY A;  3NT4 A;  3EP6 B;  3DBV O;  1DC5 A;  3PQV A;  3EP3 B;  1I79 B;  2GLX A;  3GFG A;  1PS8 A;  4IQ0 A;  3QW2 A;  3ABI A;  5JYA A;  3WGO A;  1H9B A;  3B20 A;  4O59 O;  1HDG O;  3C8M A;  4MKX A;  1Q2X A;  1GPD G;  1DRV A;  3DB2 A;  1U1I A;  1CRW G;  1EBF A;  1P1J A;  1DIH A;  3KSZ O;  4TVB A;  2DAP A;  3QVX A;  5GZ3 A;  3DZ3 B;  1H2H A;  2GD1 O;  3PYL A;  1MC4 A;  1H6B A;  1OBF O;  4R41 A;  2XF8 A;  3CPS A;  2R00 C;  4LRS B;  1ZH8 A;  3E18 A;  2YV3 A;  4R51 A;  3M2T A;  1T4B A;  1GAE O;  2X0N A;  4LSM A;  3KV3 O;  4BOY A;  3STH A;  3F4L A;  1VKN A;  1Q7G A;  2GZ1 A;  3TV1 A;  1RM0 A;  1CF2 O;  2DC1 A;  5TVO B;  5A06 A;  2O48 X;  1GL3 A;  2NQT A;  1PQP A;  1PQU A;  5T73 A;  1TLT A;  3K9Q O;  4PLP A;  3DMT C;  3MTJ A;  3Q11 A;  1H6C A;  3WGZ A;  3UUW A;  1RM3 A;  5BNT A;  3PWK A;  3E6A A;  3Q2I A;  3EC7 A;  4MVJ E;  1YS4 A;  4LRT B;  3FD8 A;  3LVF O;  3RC2 A;  3H0V B;  3C1A A;  1JEN B;  1QXS A;  1I72 B;  1DC3 A;  4L9R A;  1H93 A;  4MKZ A;  4HAD A;  3Q0E A;  1I7B B;  4WNI A;  1J5P A;  1IHX A;  4AK1 A;  4R54 A;  4XR4 A;  2VYV D;  3GPD G;  3PYM A;  3NTR A;  1PU2 A;  3IDS A;  4R3W A;  1DAP A;  2EJW A;  3H0W B;  3NTO A;  3GDO A;  3RC7 A;  4K9D A;  4ZIC A;  2FPN A;  2I3G A;  3O9Z A;  4HKT A;  1CER A;  2EP7 A;  4MVJ A;  2B4T O;  3K73 O;  1S7C A;  2D2I A;  4QX6 A;  3BTS A;  3IP3 A;  3QVW A;  1EVJ A;  3CEA A;  2O4U X;  2Q4E A;  4MVJ I;  5KVQ A;  3WGQ A;  1QKI A;  3HJA A;  1T4D A;  2H63 A;  2VYV A;  3BIO A;  3HSK A;  4FB5 A;  1TA4 A;  4MIE A;  3E1K A;  3KSD O;  4LGV A;  1MB4 A;  3DZ7 B;  3RC9 A;  3IWD B;  3E9M A;  3IJP A;  3BTU A;  3NT2 A;  3IWC B;  4R4J A;  1OZA A;  1GR0 A;  1JN0 A;  1TB4 A;  3PYX A;  2Q49 A;  3ZCX A;  3WYC A;  1YWG O;  1H9A A;  4KOA A;  2PKQ P;  1VM6 A;  3RVD A;  2CVO A;  3LC1 O; 
#chains in the Genus database with same CATH homology
 1MHM A;  3EP4 A;  3DZ2 B;  1I7B A;  3EPB A;  1I7M B;  3DZ4 A;  3DZ6 B;  1TMI A;  3DZ7 A;  3DZ2 A;  3EP9 B;  1JL0 A;  3EPA B;  1I7M A;  3DZ6 A;  3EP6 B;  1I7C B;  3DZ5 B;  3EP3 B;  3EP9 A;  2III A;  5TVO B;  3EPA A;  3H0W B;  3DZ3 B;  1I79 B;  3H0V B;  3EP5 B;  3EP6 A;  1I7C A;  3DZ5 A;  3EP3 A;  1JEN B;  5TVO A;  1I72 B;  3EP7 B;  1VR7 A;  3EP8 B;  3H0W A;  3H0V A;  3DZ3 A;  1I79 A;  1MHM B;  3EP5 A;  3EP4 B;  1I7B B;  3EPB B;  1JEN A;  1I72 A;  3DZ4 B;  3EP7 A;  3EP8 A;  1TLU A;  1MSV A;  3DZ7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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