3EPAB

Human adometdc e178q mutant complexed with putrescine
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
63
structure length
54
Chain Sequence
HFFEGTEKLLEVWFSSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 8
structure length 54
sequence length 63
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 3epaB01
1MHMB 3EP6B 3DZ6B 3EP7B 3DZ2B 1I7BB 3DZ5B 3EP3B 3H0VB 3DZ4B 3EP5B 3EP4B 3EPBB 1I7CB 1I79B 1I7MB 5TVOB 3EP8B 1JENB 3H0WB 3DZ3B 3DZ7B 3EPAB 3EP9B 1I72B
chains in the Genus database with same CATH superfamily
4PG4A 1NQOA 1GL3A 1H93A 4MIOA 1YDWA 1DRUA 4GMFA 3EC7A 4XR4A 2DPGA 2B4RO 4F3YA 3E9MA 3EP5B 1NVMB 3PQVA 3MOIA 4DBVO 3C1AA 3E18A 3GFGA 5DDIP 4MVJD 1E5QA 3TV1A 3KSZO 2HKIA 1DPGA 1P1FA 3ZDFA 3QVTA 4DPKA 3CIFA 1H6CA 1U1IA 4XRGA 2DUUA 4IQ8A 1YWGO 1T4DA 1EVJA 3QV1A 1YL6A 1TB4A 3WGYA 1GYQA 1H9AA 4H3VA 2PKQP 4R41A 5GZ1A 4O63O 1TA4A 4XB2A 3NT4A 4IQ0A 3U3XA 3V5NA 5CEFA 1I32A 5JYFA 1P1JA 5A06A 3V2UA 1I7BB 1TLTA 2DC1A 5C7OO 2EP5A 2PKRA 4FB5A 1H6AA 2OZPA 1J0XO 2QZ9A 4L8VA 3OHSX 4QX6A 3EP4B 1K3TA 3E82A 1DRVA 3LC7O 3DZ3B 4MVJP 4PG5A 4O59O 3CEAA 1PR3A 3RC2A 2HJSA 2NVWA 1I72B 4MVJH 4MKXA 4XQGA 2BHLA 4PG7A 3WYCA 4NHEA 4DPMA 3KUXA 5BNTA 3NT2A 2VYVA 2BH9A 1LA2A 1LC0A 3TZ6A 2G17A 5EINA 2O4UX 1YL7A 3PYLA 1NWHA 4ZHSA 3IJPA 3E5RA 4INAA 4P8RA 4MJLA 3NTRA 4MINA 3IDSA 1GPDG 1YL5A 3PYXA 4XQCA 3EP7B 1ZNQO 4ZICA 2X0NA 3ABIA 3EUWA 3WGZA 1ML3A 1I7CB 2EP7A 5A04A 4Z0HO 1BRMA 1P1KA 5AVOA 2YYYA 1DRWA 2B4TO 4O8JA 1VKOA 5JYEA 2Q49A 3BIOA 3GPDG 1Q2XA 1RM4A 3DAPA 1EBFA 1VM6A 3INGA 4MVJE 1J5PA 3FD8A 4DPLA 3DZ4B 5M6DA 3PWKA 3V1YA 1OBFO 3RBVA 4XQ9A 3KV3O 1I7MB 3QY9A 1LC3A 3I23A 4LGVA 3UW3A 3JSAA 4GMGA 4MVJG 3LC2O 3EPBB 3CINA 1DSSG 2Q4EA 1EBUA 3EVNA 3HSKA 1H6DA 4L9RA 1VSUA 5JYAA 3C8MA 3IP3A 3Q11A 3VAZA 3H0VB 1PQUA 4PLPA 1HDGO 3M2TA 4II7A 1P9LA 3E6AA 3GDOA 4LSMA 3EP8B 3O9ZA 2PH5A 1NBOA 2GZ3A 4N54A 5T73A 3KGDA 3DOCA 4MVJA 1PS8A 3PWSA 1RYDA 3PFWO 3K2BA 3NT5A 1UYJA 3BTUA 3EP3B 4HADA 2VYND 2GLXA 1CF2O 3OA2A 2FPNA 4R5MA 3WBBA 1I79B 2DBVO 1XYGA 3HJAA 1PU2A 3WB9A 3EP9B 3RC7A 3ZCXA 3UUWA 3IWDB 1P1HA 1QKIA 4R3NA 3H9EO 1RM0A 3PZBA 3TUXA 1DC5A 1NQAO 3TUTA 2D2IA 1E5LA 3RC1A 1DC6A 2O48X 4MIYA 3DBVO 2GYYA 1P1IA 1JENB 3H0WB 5GZ3A 3DMTC 1TVEA 3WGOA 3B1JA 3Q0EA 4GQAA 5KVQA 1CERA 3LVFO 3DZ6B 3GNQA 3BTSA 1FF9A 2CZCA 1MB4A 1ARZA 3LC1O 2CVOA 1DC3A 1GCUA 3DTYA 2YV3A 3IWCB 4PG8A 2I3GA 1GYPA 3FHLA 3DZ7B 3MZ0A 3NTQA 1H9BA 3L0DA 1U8FO 2IXBA 2R00C 2EJWA 1B7GO 1T4BA 2I3AA 3IWBB 2I5PO 1DIHA 1QMIA 4WNCA 1DBVO 2GZ2A 1PQPA 1SZJG 1GAEO 3K9QO 5J9GA 1IHXA 3MTJA 4R4JA 3RC9A 5EERA 3EPAB 2NQTA 1RYEA 2PKQO 3WGQA 1VSVA 3VOSA 5A05A 4XB1A 3DB2A 3OQBA 1YS4A 3CPSA 2X5KO 3B20A 1GADO 1NX6A 1E7YA 3B1KA 4R54A 1I33A 4JN6B 3L6OO 1JN0A 3RVDA 3PYMA 3QVSA 3HNPA 4MVJM 2HO5A 3Q1LA 1QMHA 1H94A 2IXAA 4BOYA 3DZ5B 1IHYA 4K9DA 5EIOA 5JW6A 4R51A 4HKTA 4LRSB 3EZYA 1RM3A 1CRWG 5EESA 1MC4A 1E77A 5GZ6A 4KOAA 4GPD1 3Q2KA 2X5JO 1NPTO 1C3VA 4AK1A 1MHMB 3HQ4O 5JY6A 2VYVD 3CMCO 1F06A 2GZ1A 3QVXA 2G82A 1VC2A 2P2SA 3DMTA 1A7KA 5KVSA 1E7MA 4O89A 4YWJA 4CLQA 5A02A 3DO5A 4WOJA 1OZAA 2VYNA 3PZRA 5TVOB 3RCBA 1NQ5A 3WYBA 3QW2A 2Q22A 3K73O 4XQEA 3OA0A 1Q7GA 3EP6B 1H2HA 4DIBA 3TW3A 3DZ2B 4EW6A 2DAPA 4LRTB 3STHA 4YDRA 5A03A 1DAPA 4MVJI 1DC4A 5AQ1A 2POQX 1RM5A 4MIEA 1H6BA 1JKIA 3E1KA 2R00A 1NWCA 2AXQA 3WBFA 5C7LO 2H63A 4WNIA 3DR3A 4RL6A 1OFGA 4PG6A 3ZJXA 4MKZA 1JKFA 1XEAA 1VKNA 3F4LA 4MVJF 3QVWA 3NTOA 4TVBA 4R5HA 1ZH8A 3KSDO 1GR0A 3Q2IA 4R3WA 3L4SO 3BTVA 2XF8A 1GD1O 1QXSA 2GD1O 3HXLA 5C7IO 1S7CA
chains in the Genus database with same CATH topology
1MHMB 3EP6B 3DZ6B 3EP7B 3DZ2B 1I7BB 3EP4A 3EP5A 3DZ4A 3H0VA 3DZ5B 3EP3B 1I7CA 1TMIA 1I79A 1I7MA 5TVOA 1TLUA 1I72B 3EP8A 3DZ3A 1MSVA 3DZ4B 3H0VB 1JENA 3EP5B 3EP9B 3EP4B 3EPBB 3H0WA 3DZ7A 3EPAA 1I7CB 1I72A 2IIIA 3EP9A 1I79B 1MHMA 1I7MB 3EPBA 5TVOB 3EP8B 3EP6A 1JENB 3H0WB 3DZ3B 3EP7A 1JL0A 3DZ7B 3DZ6A 3DZ2A 3EPAB 1I7BA 3EP3A 1VR7A 3DZ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MHM B;  3EP6 B;  3DZ6 B;  3EP7 B;  3DZ2 B;  1I7B B;  3DZ5 B;  3EP3 B;  3H0V B;  3DZ4 B;  3EP5 B;  3EP4 B;  3EPB B;  1I7C B;  1I79 B;  1I7M B;  5TVO B;  3EP8 B;  1JEN B;  3H0W B;  3DZ3 B;  3DZ7 B;  3EPA B;  3EP9 B;  1I72 B; 
#chains in the Genus database with same CATH topology
 4PG4 A;  1NQO A;  1GL3 A;  1H93 A;  4MIO A;  1YDW A;  1DRU A;  4GMF A;  3EC7 A;  4XR4 A;  2DPG A;  2B4R O;  4F3Y A;  3E9M A;  3EP5 B;  1NVM B;  3PQV A;  3MOI A;  4DBV O;  3C1A A;  3E18 A;  3GFG A;  5DDI P;  4MVJ D;  1E5Q A;  3TV1 A;  3KSZ O;  2HKI A;  1DPG A;  1P1F A;  3ZDF A;  3QVT A;  4DPK A;  3CIF A;  1H6C A;  1U1I A;  4XRG A;  2DUU A;  4IQ8 A;  1YWG O;  1T4D A;  1EVJ A;  3QV1 A;  1YL6 A;  1TB4 A;  3WGY A;  1GYQ A;  1H9A A;  4H3V A;  2PKQ P;  4R41 A;  5GZ1 A;  4O63 O;  1TA4 A;  4XB2 A;  3NT4 A;  4IQ0 A;  3U3X A;  3V5N A;  5CEF A;  1I32 A;  5JYF A;  1P1J A;  5A06 A;  3V2U A;  1I7B B;  1TLT A;  2DC1 A;  5C7O O;  2EP5 A;  2PKR A;  4FB5 A;  1H6A A;  2OZP A;  1J0X O;  2QZ9 A;  4L8V A;  3OHS X;  4QX6 A;  3EP4 B;  1K3T A;  3E82 A;  1DRV A;  3LC7 O;  3DZ3 B;  4MVJ P;  4PG5 A;  4O59 O;  3CEA A;  1PR3 A;  3RC2 A;  2HJS A;  2NVW A;  1I72 B;  4MVJ H;  4MKX A;  4XQG A;  2BHL A;  4PG7 A;  3WYC A;  4NHE A;  4DPM A;  3KUX A;  5BNT A;  3NT2 A;  2VYV A;  2BH9 A;  1LA2 A;  1LC0 A;  3TZ6 A;  2G17 A;  5EIN A;  2O4U X;  1YL7 A;  3PYL A;  1NWH A;  4ZHS A;  3IJP A;  3E5R A;  4INA A;  4P8R A;  4MJL A;  3NTR A;  4MIN A;  3IDS A;  1GPD G;  1YL5 A;  3PYX A;  4XQC A;  3EP7 B;  1ZNQ O;  4ZIC A;  2X0N A;  3ABI A;  3EUW A;  3WGZ A;  1ML3 A;  1I7C B;  2EP7 A;  5A04 A;  4Z0H O;  1BRM A;  1P1K A;  5AVO A;  2YYY A;  1DRW A;  2B4T O;  4O8J A;  1VKO A;  5JYE A;  2Q49 A;  3BIO A;  3GPD G;  1Q2X A;  1RM4 A;  3DAP A;  1EBF A;  1VM6 A;  3ING A;  4MVJ E;  1J5P A;  3FD8 A;  4DPL A;  3DZ4 B;  5M6D A;  3PWK A;  3V1Y A;  1OBF O;  3RBV A;  4XQ9 A;  3KV3 O;  1I7M B;  3QY9 A;  1LC3 A;  3I23 A;  4LGV A;  3UW3 A;  3JSA A;  4GMG A;  4MVJ G;  3LC2 O;  3EPB B;  3CIN A;  1DSS G;  2Q4E A;  1EBU A;  3EVN A;  3HSK A;  1H6D A;  4L9R A;  1VSU A;  5JYA A;  3C8M A;  3IP3 A;  3Q11 A;  3VAZ A;  3H0V B;  1PQU A;  4PLP A;  1HDG O;  3M2T A;  4II7 A;  1P9L A;  3E6A A;  3GDO A;  4LSM A;  3EP8 B;  3O9Z A;  2PH5 A;  1NBO A;  2GZ3 A;  4N54 A;  5T73 A;  3KGD A;  3DOC A;  4MVJ A;  1PS8 A;  3PWS A;  1RYD A;  3PFW O;  3K2B A;  3NT5 A;  1UYJ A;  3BTU A;  3EP3 B;  4HAD A;  2VYN D;  2GLX A;  1CF2 O;  3OA2 A;  2FPN A;  4R5M A;  3WBB A;  1I79 B;  2DBV O;  1XYG A;  3HJA A;  1PU2 A;  3WB9 A;  3EP9 B;  3RC7 A;  3ZCX A;  3UUW A;  3IWD B;  1P1H A;  1QKI A;  4R3N A;  3H9E O;  1RM0 A;  3PZB A;  3TUX A;  1DC5 A;  1NQA O;  3TUT A;  2D2I A;  1E5L A;  3RC1 A;  1DC6 A;  2O48 X;  4MIY A;  3DBV O;  2GYY A;  1P1I A;  1JEN B;  3H0W B;  5GZ3 A;  3DMT C;  1TVE A;  3WGO A;  3B1J A;  3Q0E A;  4GQA A;  5KVQ A;  1CER A;  3LVF O;  3DZ6 B;  3GNQ A;  3BTS A;  1FF9 A;  2CZC A;  1MB4 A;  1ARZ A;  3LC1 O;  2CVO A;  1DC3 A;  1GCU A;  3DTY A;  2YV3 A;  3IWC B;  4PG8 A;  2I3G A;  1GYP A;  3FHL A;  3DZ7 B;  3MZ0 A;  3NTQ A;  1H9B A;  3L0D A;  1U8F O;  2IXB A;  2R00 C;  2EJW A;  1B7G O;  1T4B A;  2I3A A;  3IWB B;  2I5P O;  1DIH A;  1QMI A;  4WNC A;  1DBV O;  2GZ2 A;  1PQP A;  1SZJ G;  1GAE O;  3K9Q O;  5J9G A;  1IHX A;  3MTJ A;  4R4J A;  3RC9 A;  5EER A;  3EPA B;  2NQT A;  1RYE A;  2PKQ O;  3WGQ A;  1VSV A;  3VOS A;  5A05 A;  4XB1 A;  3DB2 A;  3OQB A;  1YS4 A;  3CPS A;  2X5K O;  3B20 A;  1GAD O;  1NX6 A;  1E7Y A;  3B1K A;  4R54 A;  1I33 A;  4JN6 B;  3L6O O;  1JN0 A;  3RVD A;  3PYM A;  3QVS A;  3HNP A;  4MVJ M;  2HO5 A;  3Q1L A;  1QMH A;  1H94 A;  2IXA A;  4BOY A;  3DZ5 B;  1IHY A;  4K9D A;  5EIO A;  5JW6 A;  4R51 A;  4HKT A;  4LRS B;  3EZY A;  1RM3 A;  1CRW G;  5EES A;  1MC4 A;  1E77 A;  5GZ6 A;  4KOA A;  4GPD 1;  3Q2K A;  2X5J O;  1NPT O;  1C3V A;  4AK1 A;  1MHM B;  3HQ4 O;  5JY6 A;  2VYV D;  3CMC O;  1F06 A;  2GZ1 A;  3QVX A;  2G82 A;  1VC2 A;  2P2S A;  3DMT A;  1A7K A;  5KVS A;  1E7M A;  4O89 A;  4YWJ A;  4CLQ A;  5A02 A;  3DO5 A;  4WOJ A;  1OZA A;  2VYN A;  3PZR A;  5TVO B;  3RCB A;  1NQ5 A;  3WYB A;  3QW2 A;  2Q22 A;  3K73 O;  4XQE A;  3OA0 A;  1Q7G A;  3EP6 B;  1H2H A;  4DIB A;  3TW3 A;  3DZ2 B;  4EW6 A;  2DAP A;  4LRT B;  3STH A;  4YDR A;  5A03 A;  1DAP A;  4MVJ I;  1DC4 A;  5AQ1 A;  2POQ X;  1RM5 A;  4MIE A;  1H6B A;  1JKI A;  3E1K A;  2R00 A;  1NWC A;  2AXQ A;  3WBF A;  5C7L O;  2H63 A;  4WNI A;  3DR3 A;  4RL6 A;  1OFG A;  4PG6 A;  3ZJX A;  4MKZ A;  1JKF A;  1XEA A;  1VKN A;  3F4L A;  4MVJ F;  3QVW A;  3NTO A;  4TVB A;  4R5H A;  1ZH8 A;  3KSD O;  1GR0 A;  3Q2I A;  4R3W A;  3L4S O;  3BTV A;  2XF8 A;  1GD1 O;  1QXS A;  2GD1 O;  3HXL A;  5C7I O;  1S7C A; 
#chains in the Genus database with same CATH homology
 1MHM B;  3EP6 B;  3DZ6 B;  3EP7 B;  3DZ2 B;  1I7B B;  3EP4 A;  3EP5 A;  3DZ4 A;  3H0V A;  3DZ5 B;  3EP3 B;  1I7C A;  1TMI A;  1I79 A;  1I7M A;  5TVO A;  1TLU A;  1I72 B;  3EP8 A;  3DZ3 A;  1MSV A;  3DZ4 B;  3H0V B;  1JEN A;  3EP5 B;  3EP9 B;  3EP4 B;  3EPB B;  3H0W A;  3DZ7 A;  3EPA A;  1I7C B;  1I72 A;  2III A;  3EP9 A;  1I79 B;  1MHM A;  1I7M B;  3EPB A;  5TVO B;  3EP8 B;  3EP6 A;  1JEN B;  3H0W B;  3DZ3 B;  3EP7 A;  1JL0 A;  3DZ7 B;  3DZ6 A;  3DZ2 A;  3EPA B;  1I7B A;  3EP3 A;  1VR7 A;  3DZ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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