3EPBB

Human adometdc e256q mutant complexed with putrescine
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
63
structure length
55
Chain Sequence
HFFEGTEKLLEVWFSGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords S-adenosylmethionine decarboxylase beta chain
publication title Structural Basis for Putrescine Activation of Human S-Adenosylmethionine Decarboxylase.
pubmed doi rcsb
source organism Homo sapiens
total genus 8
structure length 55
sequence length 63
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2008-09-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.360.50 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase; domain 2 S-adenosylmethionine decarboxylase 3epbB01
3EP9B 3EP4B 3EP5B 1I79B 3EP3B 3EP7B 3EPAB 3DZ2B 3DZ5B 1JENB 1I7CB 1MHMB 1I72B 5TVOB 3DZ7B 1I7BB 3EP6B 3EPBB 3DZ3B 1I7MB 3H0WB 3EP8B 3DZ6B 3DZ4B 3H0VB
chains in the Genus database with same CATH superfamily
3RC7A 1IHXA 4PG5A 3V2UA 4PLPA 1QKIA 3DAPA 4DIBA 2VYND 3UUWA 1YDWA 4RL6A 3PYLA 1U8FO 5A06A 4ZHSA 4XR4A 1DC4A 2I5PO 1VM6A 2DAPA 1H2HA 2B4TO 1DC3A 3BTVA 4P8RA 4WOJA 3EUWA 1QXSA 4XQGA 3HQ4O 1NPTO 1YL7A 3WBBA 3PQVA 3I23A 2B4RO 3TUXA 4Z0HO 1H9AA 3FHLA 3E6AA 1P1IA 2YYYA 2CVOA 4PG8A 4L9RA 3NTOA 1C3VA 3Q0EA 1A7KA 3GFGA 3QW2A 2PKQP 4JN6B 5KVQA 2EP7A 4R41A 5JYEA 3DBVO 4MVJE 3WGOA 2GZ2A 4PG7A 5JYFA 1YL5A 4O59O 4XQ9A 1NVMB 3IWDB 1LC3A 4MVJP 3DZ2B 3E1KA 3HXLA 1DIHA 3V5NA 4PG6A 1VSVA 4MVJG 3KGDA 3DZ3B 1DRUA 3QVTA 1I7MB 5EERA 1GR0A 2DBVO 3DZ6B 4IQ0A 4XB1A 3KSZO 3B1JA 2R00A 3INGA 5A05A 3QVWA 3DMTC 3EP7B 1ML3A 4MVJM 1NX6A 5A02A 2GZ3A 1DPGA 5JW6A 1EBFA 1JKIA 1I7CB 1PR3A 1I7BB 1U1IA 3IJPA 3OHSX 3DB2A 3DZ4B 3IP3A 3CIFA 3Q2IA 1DAPA 4NHEA 1E77A 2R00C 3IWBB 2D2IA 3EP5B 3C1AA 5EESA 1K3TA 1NWCA 5KVSA 1P1JA 4R51A 3WGYA 1JENB 5C7LO 2NVWA 2IXBA 3WBFA 2P2SA 5JYAA 3O9ZA 3WYBA 3DOCA 2GLXA 4R5HA 3CMCO 3Q1LA 2EJWA 1EBUA 1OZAA 3DO5A 4LRSB 1ZH8A 3EP4B 1DRVA 4F3YA 3ABIA 3NTRA 1OFGA 1BRMA 1RYDA 4QX6A 3RC2A 3MTJA 2I3GA 3BTSA 2X0NA 3E18A 1S7CA 2VYVD 3ZDFA 1VC2A 1XYGA 1GD1O 3KV3O 1H93A 2IXAA 1DC6A 2QZ9A 4XQCA 4LGVA 1VKNA 4L8VA 3TV1A 3B20A 2DC1A 1JN0A 1UYJA 1E5LA 4XQEA 1I79B 3GDOA 2XF8A 1TB4A 3L4SO 3PFWO 1XEAA 4MVJD 3TW3A 3PZBA 3DZ7B 1DRWA 2G17A 4BOYA 3DTYA 3NT4A 3MZ0A 3RVDA 5GZ1A 1QMIA 1H6BA 5BNTA 1I33A 1SZJG 1NQ5A 3NT5A 2HKIA 2PKQO 5AQ1A 3B1KA 1GCUA 3DMTA 3OA2A 2Q49A 2NQTA 1F06A 3EZYA 4LRTB 3K9QO 3EP9B 2EP5A 1P9LA 4MVJH 3TZ6A 1T4DA 3GPDG 1NQAO 4K9DA 3RC1A 4R5MA 5JY6A 1HDGO 3PYMA 1YWGO 1IHYA 3ZJXA 4HKTA 3H9EO 3WGQA 1JKFA 3E82A 4O63O 4TVBA 1DBVO 3GNQA 1GADO 1GL3A 3L0DA 1RM5A 1CRWG 3UW3A 3QV1A 3IDSA 4II7A 2VYVA 4R54A 1GYPA 1MHMB 5AVOA 3STHA 3EP6B 3WGZA 1NWHA 4GQAA 3WB9A 3F4LA 2OZPA 4GMFA 1E7YA 2X5KO 3H0VB 3K2BA 1P1KA 1VSUA 3Q11A 3QVXA 3HSKA 2DUUA 1TA4A 4DBVO 5C7IO 4N54A 1DC5A 3BIOA 3OQBA 4MVJA 3JSAA 4AK1A 1RM0A 4GMGA 2GZ1A 1LA2A 1ZNQO 2DPGA 4DPKA 2PH5A 4MVJF 1GAEO 5T73A 5A03A 2BH9A 3PWSA 5A04A 4MIOA 1DSSG 2CZCA 1B7GO 3TUTA 1RM3A 5J9GA 1PS8A 2FPNA 5EINA 2YV3A 2HJSA 1E7MA 2AXQA 4MJLA 2X5JO 3NTQA 1OBFO 4YWJA 4R3NA 1VKOA 2POQX 1P1FA 4XB2A 3IWCB 3Q2KA 2BHLA 1YL6A 4HADA 3PZRA 3H0WB 3BTUA 3EP8B 3LC1O 1NQOA 1PQPA 3QVSA 3OA0A 2H63A 4MKXA 1CERA 1FF9A 3EP3B 4WNIA 1RYEA 1T4BA 5GZ3A 3M2TA 3CEAA 3RBVA 3KUXA 4R4JA 5TVOB 3QY9A 3EVNA 4INAA 2I3AA 2Q22A 2G82A 3EPBB 2GYYA 1ARZA 3LC2O 3VOSA 2O48X 3CPSA 3LC7O 3L6OO 1CF2O 5GZ6A 4ZICA 1TVEA 3KSDO 5EIOA 3RC9A 3CINA 3ZCXA 1LC0A 1RM4A 1MC4A 3K73O 4DPMA 3E5RA 5CEFA 1E5QA 3E9MA 1Q7GA 1P1HA 1TLTA 1GYQA 4CLQA 2PKRA 3HJAA 4O8JA 4MIEA 1PU2A 1Q2XA 4DPLA 1H6DA 3EC7A 3MOIA 4LSMA 1I32A 3V1YA 4H3VA 3HNPA 3DZ5B 5DDIP 1J0XO 4MINA 1NBOA 3PYXA 2GD1O 1H6CA 3LVFO 3WYCA 1H94A 5M6DA 4KOAA 4XRGA 3RCBA 4MKZA 1H6AA 4R3WA 5C7OO 3DR3A 1H9BA 2Q4EA 3FD8A 4PG4A 1YS4A 2VYNA 4GPD1 1GPDG 4WNCA 1EVJA 1J5PA 4EW6A 4YDRA 3EPAB 1PQUA 1QMHA 2HO5A 3PWKA 1I72B 4O89A 4MVJI 3VAZA 3C8MA 3NT2A 4MIYA 4FB5A 3U3XA 4IQ8A 2O4UX 1MB4A
chains in the Genus database with same CATH topology
3EP9B 3DZ3A 3EPBA 3EP4B 1I7MA 3EP5B 1I79B 3H0WA 1TMIA 3DZ4A 3EP8A 3DZ6A 3EP3B 3H0VA 3EP9A 3EP7B 3EPAB 3DZ2B 3DZ5B 1JENB 1I7CB 1MHMB 1TLUA 3EP4A 3EP5A 1I72B 5TVOB 1I79A 1I7BB 3DZ7B 3EP6B 1MSVA 3EP3A 3EPBB 3DZ3B 3EP7A 1I7MB 1VR7A 3EPAA 3DZ2A 3H0VB 3H0WB 1JL0A 3DZ5A 1JENA 3EP8B 3DZ6B 3DZ4B 1I7CA 1MHMA 2IIIA 3DZ7A 5TVOA 3EP6A 1I72A 1I7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EP9 B;  3EP4 B;  3EP5 B;  1I79 B;  3EP3 B;  3EP7 B;  3EPA B;  3DZ2 B;  3DZ5 B;  1JEN B;  1I7C B;  1MHM B;  1I72 B;  5TVO B;  3DZ7 B;  1I7B B;  3EP6 B;  3EPB B;  3DZ3 B;  1I7M B;  3H0W B;  3EP8 B;  3DZ6 B;  3DZ4 B;  3H0V B; 
#chains in the Genus database with same CATH topology
 3RC7 A;  1IHX A;  4PG5 A;  3V2U A;  4PLP A;  1QKI A;  3DAP A;  4DIB A;  2VYN D;  3UUW A;  1YDW A;  4RL6 A;  3PYL A;  1U8F O;  5A06 A;  4ZHS A;  4XR4 A;  1DC4 A;  2I5P O;  1VM6 A;  2DAP A;  1H2H A;  2B4T O;  1DC3 A;  3BTV A;  4P8R A;  4WOJ A;  3EUW A;  1QXS A;  4XQG A;  3HQ4 O;  1NPT O;  1YL7 A;  3WBB A;  3PQV A;  3I23 A;  2B4R O;  3TUX A;  4Z0H O;  1H9A A;  3FHL A;  3E6A A;  1P1I A;  2YYY A;  2CVO A;  4PG8 A;  4L9R A;  3NTO A;  1C3V A;  3Q0E A;  1A7K A;  3GFG A;  3QW2 A;  2PKQ P;  4JN6 B;  5KVQ A;  2EP7 A;  4R41 A;  5JYE A;  3DBV O;  4MVJ E;  3WGO A;  2GZ2 A;  4PG7 A;  5JYF A;  1YL5 A;  4O59 O;  4XQ9 A;  1NVM B;  3IWD B;  1LC3 A;  4MVJ P;  3DZ2 B;  3E1K A;  3HXL A;  1DIH A;  3V5N A;  4PG6 A;  1VSV A;  4MVJ G;  3KGD A;  3DZ3 B;  1DRU A;  3QVT A;  1I7M B;  5EER A;  1GR0 A;  2DBV O;  3DZ6 B;  4IQ0 A;  4XB1 A;  3KSZ O;  3B1J A;  2R00 A;  3ING A;  5A05 A;  3QVW A;  3DMT C;  3EP7 B;  1ML3 A;  4MVJ M;  1NX6 A;  5A02 A;  2GZ3 A;  1DPG A;  5JW6 A;  1EBF A;  1JKI A;  1I7C B;  1PR3 A;  1I7B B;  1U1I A;  3IJP A;  3OHS X;  3DB2 A;  3DZ4 B;  3IP3 A;  3CIF A;  3Q2I A;  1DAP A;  4NHE A;  1E77 A;  2R00 C;  3IWB B;  2D2I A;  3EP5 B;  3C1A A;  5EES A;  1K3T A;  1NWC A;  5KVS A;  1P1J A;  4R51 A;  3WGY A;  1JEN B;  5C7L O;  2NVW A;  2IXB A;  3WBF A;  2P2S A;  5JYA A;  3O9Z A;  3WYB A;  3DOC A;  2GLX A;  4R5H A;  3CMC O;  3Q1L A;  2EJW A;  1EBU A;  1OZA A;  3DO5 A;  4LRS B;  1ZH8 A;  3EP4 B;  1DRV A;  4F3Y A;  3ABI A;  3NTR A;  1OFG A;  1BRM A;  1RYD A;  4QX6 A;  3RC2 A;  3MTJ A;  2I3G A;  3BTS A;  2X0N A;  3E18 A;  1S7C A;  2VYV D;  3ZDF A;  1VC2 A;  1XYG A;  1GD1 O;  3KV3 O;  1H93 A;  2IXA A;  1DC6 A;  2QZ9 A;  4XQC A;  4LGV A;  1VKN A;  4L8V A;  3TV1 A;  3B20 A;  2DC1 A;  1JN0 A;  1UYJ A;  1E5L A;  4XQE A;  1I79 B;  3GDO A;  2XF8 A;  1TB4 A;  3L4S O;  3PFW O;  1XEA A;  4MVJ D;  3TW3 A;  3PZB A;  3DZ7 B;  1DRW A;  2G17 A;  4BOY A;  3DTY A;  3NT4 A;  3MZ0 A;  3RVD A;  5GZ1 A;  1QMI A;  1H6B A;  5BNT A;  1I33 A;  1SZJ G;  1NQ5 A;  3NT5 A;  2HKI A;  2PKQ O;  5AQ1 A;  3B1K A;  1GCU A;  3DMT A;  3OA2 A;  2Q49 A;  2NQT A;  1F06 A;  3EZY A;  4LRT B;  3K9Q O;  3EP9 B;  2EP5 A;  1P9L A;  4MVJ H;  3TZ6 A;  1T4D A;  3GPD G;  1NQA O;  4K9D A;  3RC1 A;  4R5M A;  5JY6 A;  1HDG O;  3PYM A;  1YWG O;  1IHY A;  3ZJX A;  4HKT A;  3H9E O;  3WGQ A;  1JKF A;  3E82 A;  4O63 O;  4TVB A;  1DBV O;  3GNQ A;  1GAD O;  1GL3 A;  3L0D A;  1RM5 A;  1CRW G;  3UW3 A;  3QV1 A;  3IDS A;  4II7 A;  2VYV A;  4R54 A;  1GYP A;  1MHM B;  5AVO A;  3STH A;  3EP6 B;  3WGZ A;  1NWH A;  4GQA A;  3WB9 A;  3F4L A;  2OZP A;  4GMF A;  1E7Y A;  2X5K O;  3H0V B;  3K2B A;  1P1K A;  1VSU A;  3Q11 A;  3QVX A;  3HSK A;  2DUU A;  1TA4 A;  4DBV O;  5C7I O;  4N54 A;  1DC5 A;  3BIO A;  3OQB A;  4MVJ A;  3JSA A;  4AK1 A;  1RM0 A;  4GMG A;  2GZ1 A;  1LA2 A;  1ZNQ O;  2DPG A;  4DPK A;  2PH5 A;  4MVJ F;  1GAE O;  5T73 A;  5A03 A;  2BH9 A;  3PWS A;  5A04 A;  4MIO A;  1DSS G;  2CZC A;  1B7G O;  3TUT A;  1RM3 A;  5J9G A;  1PS8 A;  2FPN A;  5EIN A;  2YV3 A;  2HJS A;  1E7M A;  2AXQ A;  4MJL A;  2X5J O;  3NTQ A;  1OBF O;  4YWJ A;  4R3N A;  1VKO A;  2POQ X;  1P1F A;  4XB2 A;  3IWC B;  3Q2K A;  2BHL A;  1YL6 A;  4HAD A;  3PZR A;  3H0W B;  3BTU A;  3EP8 B;  3LC1 O;  1NQO A;  1PQP A;  3QVS A;  3OA0 A;  2H63 A;  4MKX A;  1CER A;  1FF9 A;  3EP3 B;  4WNI A;  1RYE A;  1T4B A;  5GZ3 A;  3M2T A;  3CEA A;  3RBV A;  3KUX A;  4R4J A;  5TVO B;  3QY9 A;  3EVN A;  4INA A;  2I3A A;  2Q22 A;  2G82 A;  3EPB B;  2GYY A;  1ARZ A;  3LC2 O;  3VOS A;  2O48 X;  3CPS A;  3LC7 O;  3L6O O;  1CF2 O;  5GZ6 A;  4ZIC A;  1TVE A;  3KSD O;  5EIO A;  3RC9 A;  3CIN A;  3ZCX A;  1LC0 A;  1RM4 A;  1MC4 A;  3K73 O;  4DPM A;  3E5R A;  5CEF A;  1E5Q A;  3E9M A;  1Q7G A;  1P1H A;  1TLT A;  1GYQ A;  4CLQ A;  2PKR A;  3HJA A;  4O8J A;  4MIE A;  1PU2 A;  1Q2X A;  4DPL A;  1H6D A;  3EC7 A;  3MOI A;  4LSM A;  1I32 A;  3V1Y A;  4H3V A;  3HNP A;  3DZ5 B;  5DDI P;  1J0X O;  4MIN A;  1NBO A;  3PYX A;  2GD1 O;  1H6C A;  3LVF O;  3WYC A;  1H94 A;  5M6D A;  4KOA A;  4XRG A;  3RCB A;  4MKZ A;  1H6A A;  4R3W A;  5C7O O;  3DR3 A;  1H9B A;  2Q4E A;  3FD8 A;  4PG4 A;  1YS4 A;  2VYN A;  4GPD 1;  1GPD G;  4WNC A;  1EVJ A;  1J5P A;  4EW6 A;  4YDR A;  3EPA B;  1PQU A;  1QMH A;  2HO5 A;  3PWK A;  1I72 B;  4O89 A;  4MVJ I;  3VAZ A;  3C8M A;  3NT2 A;  4MIY A;  4FB5 A;  3U3X A;  4IQ8 A;  2O4U X;  1MB4 A; 
#chains in the Genus database with same CATH homology
 3EP9 B;  3DZ3 A;  3EPB A;  3EP4 B;  1I7M A;  3EP5 B;  1I79 B;  3H0W A;  1TMI A;  3DZ4 A;  3EP8 A;  3DZ6 A;  3EP3 B;  3H0V A;  3EP9 A;  3EP7 B;  3EPA B;  3DZ2 B;  3DZ5 B;  1JEN B;  1I7C B;  1MHM B;  1TLU A;  3EP4 A;  3EP5 A;  1I72 B;  5TVO B;  1I79 A;  1I7B B;  3DZ7 B;  3EP6 B;  1MSV A;  3EP3 A;  3EPB B;  3DZ3 B;  3EP7 A;  1I7M B;  1VR7 A;  3EPA A;  3DZ2 A;  3H0V B;  3H0W B;  1JL0 A;  3DZ5 A;  1JEN A;  3EP8 B;  3DZ6 B;  3DZ4 B;  1I7C A;  1MHM A;  2III A;  3DZ7 A;  5TVO A;  3EP6 A;  1I72 A;  1I7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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