3ETIA

Structure of a cubic crystal form of x (adrp) domain from fcov
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
168
structure length
168
Chain Sequence
DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVMNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Rna binding protein
molecule keywords macro domain of Non-structural protein 3
publication title Structure of the X (ADRP) domain of nsp3 from feline coronavirus
pubmed doi rcsb
source organism Feline infectious peritonitis virus
total genus 52
structure length 168
sequence length 168
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2008-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3etiA00
3GPOA 5FSXA 2DX6A 3KQXA 3KR4A 4ZYQA 4ZI6A 2ACFA 1LAPA 1NJRA 5D8NA 2X47A 4J5SA 4ESSA 3H8EA 3ETIA 3IIFA 4ETKA 4R7MA 3GPQA 2BFQA 2BFRA 3GQEA 5CB3A 2VRIA 3Q71A 1VHUA 4IQYA 1BLLE 3V45A 4R6TA 4K0CA 1BPMA 5CB5A 4J5QA 2XD7A 4X2TA 2FXKA 4R76A 4ETJA 1GYTA 3H8GA 3EJGA 3EKEA 3V2BA 4ABLA 1SPVA 4ZX9A 1BPNA 4JVVA 5DUSA 2LGRA 5FSZA 4D86A 1YD9A 1TXZA 3EWRA 4J5RA 3KQZA 4JLLA 3KR5A 5CMSA 3T8WA 2FG1A 5FSYA 4J4ZA 3SIJA 5FSUA 4JGKA 3IIDA 3SIGA 1LANA 3PEIA 5HIHA 2L8RA 3SIIA 2AFCA 3VFQA 1TY8A 5HOLA 5AILA 3GPGA 3EW5A 3JRUA 4ZX8A 2FAVA 3EJFA 2EWBA 4KYBA 4ZY1A 4GVWA 4UMLA 1LAMA 4ZY2A 5E3BA 3H8FA 3KZWA 5CBMA 3EWPA 3Q6ZA 4JCAA 1ZR5A 4KSIA 1HJZA 4ZY0A 3EWOA 4GUAA 3IJ3A 3SIHA 4TU0A 4K3NA 2J9AA 3GQOA 4ABKA 3EWQA 1ZR3A 3JZTA 4GVVA 1LCPA 5FSVA 2EEEA
chains in the Genus database with same CATH superfamily
3GPOA 5FSXA 2DX6A 3KQXA 3KR4A 2WCTA 4ZYQA 4ZI6A 2ACFA 1LAPA 1NJRA 5D8NA 2X47A 4J5SA 4ESSA 3H8EA 3ETIA 3IIFA 4ETKA 4R7MA 3GPQA 2BFQA 2BFRA 3GQEA 5CB3A 2VRIA 3Q71A 1VHUA 4IQYA 1BLLE 3V45A 4R6TA 4K0CA 1BPMA 5CB5A 4J5QA 2XD7A 2JZFA 4X2TA 2FXKA 4R76A 4ETJA 1GYTA 3H8GA 2KQVA 2RNKA 3EJGA 3EKEA 2JZEA 3V2BA 4ABLA 1SPVA 4ZX9A 1BPNA 4JVVA 5DUSA 2LGRA 5FSZA 4D86A 1YD9A 1TXZA 3EWRA 4J5RA 3KQZA 4JLLA 2W2GA 3KR5A 5CMSA 3T8WA 2FG1A 5FSYA 4J4ZA 3SIJA 5FSUA 4JGKA 3IIDA 3SIGA 1LANA 3PEIA 5HIHA 2L8RA 3SIIA 2AFCA 3VFQA 1TY8A 5HOLA 5AILA 3GPGA 2JZDA 3EW5A 3JRUA 4ZX8A 2FAVA 3EJFA 2EWBA 4KYBA 4ZY1A 4GVWA 4UMLA 1LAMA 4ZY2A 5E3BA 3H8FA 3KZWA 5CBMA 3EWPA 3Q6ZA 4JCAA 1ZR5A 4KSIA 1HJZA 4ZY0A 3EWOA 4GUAA 3IJ3A 3SIHA 4TU0A 4K3NA 2J9AA 3GQOA 4ABKA 3EWQA 1ZR3A 3JZTA 4GVVA 1LCPA 5FSVA 2EEEA
chains in the Genus database with same CATH topology
3GPOA 5FSXA 2DX6A 3KQXA 3KR4A 4ZYQA 4ZI6A 2ACFA 1LAPA 1NJRA 5D8NA 2X47A 4J5SA 4ESSA 3H8EA 3ETIA 3IIFA 4ETKA 4R7MA 3GPQA 2BFQA 2BFRA 3GQEA 5CB3A 2VRIA 3Q71A 1VHUA 4IQYA 1BLLE 3V45A 4R6TA 4K0CA 1BPMA 5CB5A 4J5QA 2XD7A 4X2TA 2FXKA 4R76A 4ETJA 1GYTA 3H8GA 3EJGA 3EKEA 3V2BA 4ABLA 1SPVA 4ZX9A 1BPNA 4JVVA 5DUSA 2LGRA 5FSZA 4D86A 1YD9A 1TXZA 3EWRA 4J5RA 3KQZA 4JLLA 3KR5A 5CMSA 3T8WA 2FG1A 5FSYA 4J4ZA 3SIJA 5FSUA 4JGKA 3IIDA 3SIGA 1LANA 3PEIA 5HIHA 2L8RA 3SIIA 2AFCA 3VFQA 1TY8A 5HOLA 5AILA 3GPGA 3EW5A 3JRUA 4ZX8A 2FAVA 3EJFA 2EWBA 4KYBA 4ZY1A 4GVWA 4UMLA 1LAMA 4ZY2A 5E3BA 3H8FA 3KZWA 5CBMA 3EWPA 3Q6ZA 4JCAA 1ZR5A 4KSIA 1HJZA 4ZY0A 3EWOA 4GUAA 3IJ3A 3SIHA 4TU0A 4K3NA 2J9AA 3GQOA 4ABKA 3EWQA 1ZR3A 3JZTA 4GVVA 1LCPA 5FSVA 2EEEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GPO A;  5FSX A;  2DX6 A;  3KQX A;  3KR4 A;  4ZYQ A;  4ZI6 A;  2ACF A;  1LAP A;  1NJR A;  5D8N A;  2X47 A;  4J5S A;  4ESS A;  3H8E A;  3ETI A;  3IIF A;  4ETK A;  4R7M A;  3GPQ A;  2BFQ A;  2BFR A;  3GQE A;  5CB3 A;  2VRI A;  3Q71 A;  1VHU A;  4IQY A;  1BLL E;  3V45 A;  4R6T A;  4K0C A;  1BPM A;  5CB5 A;  4J5Q A;  2XD7 A;  4X2T A;  2FXK A;  4R76 A;  4ETJ A;  1GYT A;  3H8G A;  3EJG A;  3EKE A;  3V2B A;  4ABL A;  1SPV A;  4ZX9 A;  1BPN A;  4JVV A;  5DUS A;  2LGR A;  5FSZ A;  4D86 A;  1YD9 A;  1TXZ A;  3EWR A;  4J5R A;  3KQZ A;  4JLL A;  3KR5 A;  5CMS A;  3T8W A;  2FG1 A;  5FSY A;  4J4Z A;  3SIJ A;  5FSU A;  4JGK A;  3IID A;  3SIG A;  1LAN A;  3PEI A;  5HIH A;  2L8R A;  3SII A;  2AFC A;  3VFQ A;  1TY8 A;  5HOL A;  5AIL A;  3GPG A;  3EW5 A;  3JRU A;  4ZX8 A;  2FAV A;  3EJF A;  2EWB A;  4KYB A;  4ZY1 A;  4GVW A;  4UML A;  1LAM A;  4ZY2 A;  5E3B A;  3H8F A;  3KZW A;  5CBM A;  3EWP A;  3Q6Z A;  4JCA A;  1ZR5 A;  4KSI A;  1HJZ A;  4ZY0 A;  3EWO A;  4GUA A;  3IJ3 A;  3SIH A;  4TU0 A;  4K3N A;  2J9A A;  3GQO A;  4ABK A;  3EWQ A;  1ZR3 A;  3JZT A;  4GVV A;  1LCP A;  5FSV A;  2EEE A; 
#chains in the Genus database with same CATH topology
 3GPO A;  5FSX A;  2DX6 A;  3KQX A;  3KR4 A;  2WCT A;  4ZYQ A;  4ZI6 A;  2ACF A;  1LAP A;  1NJR A;  5D8N A;  2X47 A;  4J5S A;  4ESS A;  3H8E A;  3ETI A;  3IIF A;  4ETK A;  4R7M A;  3GPQ A;  2BFQ A;  2BFR A;  3GQE A;  5CB3 A;  2VRI A;  3Q71 A;  1VHU A;  4IQY A;  1BLL E;  3V45 A;  4R6T A;  4K0C A;  1BPM A;  5CB5 A;  4J5Q A;  2XD7 A;  2JZF A;  4X2T A;  2FXK A;  4R76 A;  4ETJ A;  1GYT A;  3H8G A;  2KQV A;  2RNK A;  3EJG A;  3EKE A;  2JZE A;  3V2B A;  4ABL A;  1SPV A;  4ZX9 A;  1BPN A;  4JVV A;  5DUS A;  2LGR A;  5FSZ A;  4D86 A;  1YD9 A;  1TXZ A;  3EWR A;  4J5R A;  3KQZ A;  4JLL A;  2W2G A;  3KR5 A;  5CMS A;  3T8W A;  2FG1 A;  5FSY A;  4J4Z A;  3SIJ A;  5FSU A;  4JGK A;  3IID A;  3SIG A;  1LAN A;  3PEI A;  5HIH A;  2L8R A;  3SII A;  2AFC A;  3VFQ A;  1TY8 A;  5HOL A;  5AIL A;  3GPG A;  2JZD A;  3EW5 A;  3JRU A;  4ZX8 A;  2FAV A;  3EJF A;  2EWB A;  4KYB A;  4ZY1 A;  4GVW A;  4UML A;  1LAM A;  4ZY2 A;  5E3B A;  3H8F A;  3KZW A;  5CBM A;  3EWP A;  3Q6Z A;  4JCA A;  1ZR5 A;  4KSI A;  1HJZ A;  4ZY0 A;  3EWO A;  4GUA A;  3IJ3 A;  3SIH A;  4TU0 A;  4K3N A;  2J9A A;  3GQO A;  4ABK A;  3EWQ A;  1ZR3 A;  3JZT A;  4GVV A;  1LCP A;  5FSV A;  2EEE A; 
#chains in the Genus database with same CATH homology
 3GPO A;  5FSX A;  2DX6 A;  3KQX A;  3KR4 A;  4ZYQ A;  4ZI6 A;  2ACF A;  1LAP A;  1NJR A;  5D8N A;  2X47 A;  4J5S A;  4ESS A;  3H8E A;  3ETI A;  3IIF A;  4ETK A;  4R7M A;  3GPQ A;  2BFQ A;  2BFR A;  3GQE A;  5CB3 A;  2VRI A;  3Q71 A;  1VHU A;  4IQY A;  1BLL E;  3V45 A;  4R6T A;  4K0C A;  1BPM A;  5CB5 A;  4J5Q A;  2XD7 A;  4X2T A;  2FXK A;  4R76 A;  4ETJ A;  1GYT A;  3H8G A;  3EJG A;  3EKE A;  3V2B A;  4ABL A;  1SPV A;  4ZX9 A;  1BPN A;  4JVV A;  5DUS A;  2LGR A;  5FSZ A;  4D86 A;  1YD9 A;  1TXZ A;  3EWR A;  4J5R A;  3KQZ A;  4JLL A;  3KR5 A;  5CMS A;  3T8W A;  2FG1 A;  5FSY A;  4J4Z A;  3SIJ A;  5FSU A;  4JGK A;  3IID A;  3SIG A;  1LAN A;  3PEI A;  5HIH A;  2L8R A;  3SII A;  2AFC A;  3VFQ A;  1TY8 A;  5HOL A;  5AIL A;  3GPG A;  3EW5 A;  3JRU A;  4ZX8 A;  2FAV A;  3EJF A;  2EWB A;  4KYB A;  4ZY1 A;  4GVW A;  4UML A;  1LAM A;  4ZY2 A;  5E3B A;  3H8F A;  3KZW A;  5CBM A;  3EWP A;  3Q6Z A;  4JCA A;  1ZR5 A;  4KSI A;  1HJZ A;  4ZY0 A;  3EWO A;  4GUA A;  3IJ3 A;  3SIH A;  4TU0 A;  4K3N A;  2J9A A;  3GQO A;  4ABK A;  3EWQ A;  1ZR3 A;  3JZT A;  4GVV A;  1LCP A;  5FSV A;  2EEE A; 
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similar chains in the Genus database (?% sequence similarity)
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