3F80A

(s)-2-amino-6-nitrohexanoic acid binds to human arginase i through multiple nitro-metal coordination interactions in the binuclear manganese cluster. resolution 1.60 a.
Total Genus 114
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
313
structure length
313
Chain Sequence
RTIGIIGAPFSKGQPRGGVEEGPTVLRKAGLLEKLKEQECDVKDYGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFLLKELKGKIPDVPGFSWVTPCISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLAREGNHKPIDYL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Arginase-1
publication title (S)-2-Amino-6-nitrohexanoic Acid Binds to Human Arginase I through Multiple Nitro-Metal Coordination Interactions in the Binuclear Manganese Cluster.
pubmed doi rcsb
source organism Homo sapiens
total genus 114
structure length 313
sequence length 313
chains with identical sequence B
ec nomenclature ec 3.5.3.1: Arginase.
pdb deposition date 2008-11-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3f80A00
4IU5A 3LP7A 2PLLA 4MXRA 4Q3QA 4Q3RC 1HQ5A 3E6VA 3PZLA 1HQFA 1TBLA 1WVBA 1TBHA 4ITYA 4IU4A 4IU1A 4RLAA 3TF3A 4IU0A 4MYFA 4CEVA 4I06A 4Q3RA 4MYLA 3SJTA 1P8RA 4Q3SA 4RHLA 1P8NA 4RHJA 3RLAA 4HWWA 1P8QA 1WOGA 2ZAVA 3NIPA 3GMZA 3MMRA 1P8SA 1T4PA 3THJA 4IXVA 4HXQA 4Q3TA 3GN0A 3DJ8A 3E6KA 4Q40A 4GSVA 4RHKA 1T4RA 1ZPGA 4GWCA 5HJ9A 3THEA 4DZ4A 1WOIA 4IE1A 3MFWA 4Q42A 4GWDA 3F80A 3E8ZA 1T4SA 5CEVA 1TA1A 2EF4A 1T5GA 3MJLA 4MYKA 4Q3VA 4IXUA 1R1OA 1TBJA 4Q3PA 3SKKA 4IE2A 1XFKA 3SL0A 2RLAA 2PHOA 1GQ7A 4RHQA 1CEVA 1T4TA 3MFVA 1GQ6A 4RHIA 4Q3UA 3KV2A 4FCKA 1P8PA 2CEVA 3THHA 1HQGA 4GSZA 5HJAA 4GSMA 1T5FA 3TH7A 3NIOA 5RLAA 4IE3A 2EIVA 3LHLA 2A0MA 3M1RA 2AEBA 1RLAA 1ZPEA 2PHAA 4G3HA 3E9BA 4RHMA 1HQXA 1P8OA 4MYNA 4Q41A 2EF5A 4HZEA 1WVAA 1PQ3A 1P8MA 3SL1A 1D3VA 1WOHA 4FCIA 3CEVA 3LP4A 3E8QA 3NIQA 1HQHA
chains in the Genus database with same CATH superfamily
4QA7A 1W22A 4IU5A 3EW8A 3LP7A 2PLLA 5EFGA 4MXRA 4Q3QA 4Q3RC 1HQ5A 3E6VA 4BZ9A 4BZ6A 3PZLA 1HQFA 4ZUMA 1TBLA 1WVBA 2VQWG 1TBHA 4ITYA 4IU4A 5EENA 5FUEA 3C10A 4IU1A 4ZUNA 3EZPA 5DC6A 5G12A 4RLAA 3TF3A 5EFNA 5ICNB 3F07A 3MZ3A 4IU0A 4MYFA 5G0XA 4QA0A 4QA3A 4I06A 4CEVA 5G3WA 3MZ6A 5D1BA 4Q3RA 4LXZA 4MYLA 3SJTA 4ZUQA 1P8RA 4Q3SA 4RHLA 1P8NA 5LI3A 3EZTA 4RHJA 3RLAA 4HWWA 1P8QA 1WOGA 1ZZ3A 2ZAVA 3Q9EA 3NIPA 5JI5A 3GMZA 3MMRA 2VQJA 1P8SA 1T4PA 3THJA 2VQQA 4QA2A 4IXVA 4HXQA 4Q3TA 5IX0A 4CBYA 3MAXA 3GN0A 3DJ8A 5DC8A 3E6KA 4Q40A 4GSVA 4RHKA 1T4RA 1ZPGA 4GWCA 5HJ9A 3THEA 4DZ4A 5G17A 1WOIA 4IE1A 3C0ZA 3MFWA 5EFBD 3RQDA 3MENA 4Q42A 4ZUOA 2VQVA 3MZ4A 2VCGA 4GWDA 3F80A 3E8ZA 1T4SA 5EEKA 1TA1A 4BZ5A 2EF4A 5BWZA 1T5GA 5CEVA 3MJLA 4MYKA 4Q3VA 5EEFA 4RN1A 5EFHA 4IXUA 5EEMA 4QA5A 5G0YA 1R1OA 1ZZ1A 1TBJA 4Q3PA 4CQFA 3SFHA 3SKKA 1ZZ0A 4IE2A 3ZNRA 1XFKA 4ZURA 3MZ7A 4BZ8A 2VQMA 5G0JA 3SL0A 2RLAA 3EWFA 5G0HA 3ZNSA 5G10A 2PHOA 5G0IA 4BZ7A 4ZUPA 1GQ7A 5EF8A 4RHQA 1T69A 1C3RA 1CEVA 1T4TA 3C0YA 3MFVA 5G1CA 1GQ6A 4RHIA 5G1AA 4Q3UA 5G13A 5THVA 3KV2A 4FCKA 5A2SA 1P8PA 4LY1A 5D1DA 5EFKB 2CEVA 3THHA 3Q9FA 1HQGA 4GSZA 5G0GA 5D1CA 4BKXB 5G1BA 5HJAA 5DC5A 1T5FA 4GSMA 3F06A 3TH7A 3LP4A 5DC7A 1T64A 3NIOA 5RLAA 3Q9CA 5FCWA 4QA1A 5THSA 4IE3A 2EIVA 2V5XA 3LHLA 4QA4A 2A0MA 4RN0A 5IWGA 3M1RA 2AEBA 1RLAA 1ZPEA 4RN2A 2PHAA 1VKGA 2V5WA 4G3HA 1C3SA 3E9BA 4RHMA 5EFJD 1HQXA 5THTA 1C3PA 4CBTA 4MYNA 4Q41A 5EF7A 2EF5A 4HZEA 3F0RA 1WVAA 1PQ3A 1T67A 1P8MA 3SFFA 5EEIA 3SL1A 1D3VA 1WOHA 5G11A 3Q9BA 3CEVA 4FCIA 4QA6A 4A69A 1P8OA 5THUA 2VQOA 3E8QA 3NIQA 1HQHA 2GH6A
chains in the Genus database with same CATH topology
4IU5A 3LP7A 2PLLA 4MXRA 4Q3QA 4Q3RC 1HQ5A 3E6VA 3PZLA 1HQFA 1TBLA 1WVBA 1TBHA 4ITYA 4IU4A 4IU1A 4RLAA 3TF3A 4IU0A 4MYFA 4CEVA 4I06A 4Q3RA 4MYLA 3SJTA 1P8RA 4Q3SA 4RHLA 1P8NA 4RHJA 3RLAA 4HWWA 1P8QA 1WOGA 2ZAVA 3NIPA 3GMZA 3MMRA 1P8SA 1T4PA 3THJA 4IXVA 4HXQA 4Q3TA 3GN0A 3DJ8A 3E6KA 4Q40A 4GSVA 4RHKA 1T4RA 1ZPGA 4GWCA 5HJ9A 3THEA 4DZ4A 1WOIA 4IE1A 3MFWA 4Q42A 4GWDA 3F80A 3E8ZA 1T4SA 5CEVA 1TA1A 2EF4A 1T5GA 3MJLA 4MYKA 4Q3VA 4IXUA 1R1OA 1TBJA 4Q3PA 3SKKA 4IE2A 1XFKA 3SL0A 2RLAA 2PHOA 1GQ7A 4RHQA 1CEVA 1T4TA 3MFVA 1GQ6A 4RHIA 4Q3UA 3KV2A 4FCKA 1P8PA 2CEVA 3THHA 1HQGA 4GSZA 5HJAA 4GSMA 1T5FA 3TH7A 3NIOA 5RLAA 4IE3A 2EIVA 3LHLA 2A0MA 3M1RA 2AEBA 1RLAA 1ZPEA 2PHAA 4G3HA 3E9BA 4RHMA 1HQXA 1P8OA 4MYNA 4Q41A 2EF5A 4HZEA 1WVAA 1PQ3A 1P8MA 3SL1A 1D3VA 1WOHA 4FCIA 3CEVA 3LP4A 3E8QA 3NIQA 1HQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IU5 A;  3LP7 A;  2PLL A;  4MXR A;  4Q3Q A;  4Q3R C;  1HQ5 A;  3E6V A;  3PZL A;  1HQF A;  1TBL A;  1WVB A;  1TBH A;  4ITY A;  4IU4 A;  4IU1 A;  4RLA A;  3TF3 A;  4IU0 A;  4MYF A;  4CEV A;  4I06 A;  4Q3R A;  4MYL A;  3SJT A;  1P8R A;  4Q3S A;  4RHL A;  1P8N A;  4RHJ A;  3RLA A;  4HWW A;  1P8Q A;  1WOG A;  2ZAV A;  3NIP A;  3GMZ A;  3MMR A;  1P8S A;  1T4P A;  3THJ A;  4IXV A;  4HXQ A;  4Q3T A;  3GN0 A;  3DJ8 A;  3E6K A;  4Q40 A;  4GSV A;  4RHK A;  1T4R A;  1ZPG A;  4GWC A;  5HJ9 A;  3THE A;  4DZ4 A;  1WOI A;  4IE1 A;  3MFW A;  4Q42 A;  4GWD A;  3F80 A;  3E8Z A;  1T4S A;  5CEV A;  1TA1 A;  2EF4 A;  1T5G A;  3MJL A;  4MYK A;  4Q3V A;  4IXU A;  1R1O A;  1TBJ A;  4Q3P A;  3SKK A;  4IE2 A;  1XFK A;  3SL0 A;  2RLA A;  2PHO A;  1GQ7 A;  4RHQ A;  1CEV A;  1T4T A;  3MFV A;  1GQ6 A;  4RHI A;  4Q3U A;  3KV2 A;  4FCK A;  1P8P A;  2CEV A;  3THH A;  1HQG A;  4GSZ A;  5HJA A;  4GSM A;  1T5F A;  3TH7 A;  3NIO A;  5RLA A;  4IE3 A;  2EIV A;  3LHL A;  2A0M A;  3M1R A;  2AEB A;  1RLA A;  1ZPE A;  2PHA A;  4G3H A;  3E9B A;  4RHM A;  1HQX A;  1P8O A;  4MYN A;  4Q41 A;  2EF5 A;  4HZE A;  1WVA A;  1PQ3 A;  1P8M A;  3SL1 A;  1D3V A;  1WOH A;  4FCI A;  3CEV A;  3LP4 A;  3E8Q A;  3NIQ A;  1HQH A; 
#chains in the Genus database with same CATH topology
 4QA7 A;  1W22 A;  4IU5 A;  3EW8 A;  3LP7 A;  2PLL A;  5EFG A;  4MXR A;  4Q3Q A;  4Q3R C;  1HQ5 A;  3E6V A;  4BZ9 A;  4BZ6 A;  3PZL A;  1HQF A;  4ZUM A;  1TBL A;  1WVB A;  2VQW G;  1TBH A;  4ITY A;  4IU4 A;  5EEN A;  5FUE A;  3C10 A;  4IU1 A;  4ZUN A;  3EZP A;  5DC6 A;  5G12 A;  4RLA A;  3TF3 A;  5EFN A;  5ICN B;  3F07 A;  3MZ3 A;  4IU0 A;  4MYF A;  5G0X A;  4QA0 A;  4QA3 A;  4I06 A;  4CEV A;  5G3W A;  3MZ6 A;  5D1B A;  4Q3R A;  4LXZ A;  4MYL A;  3SJT A;  4ZUQ A;  1P8R A;  4Q3S A;  4RHL A;  1P8N A;  5LI3 A;  3EZT A;  4RHJ A;  3RLA A;  4HWW A;  1P8Q A;  1WOG A;  1ZZ3 A;  2ZAV A;  3Q9E A;  3NIP A;  5JI5 A;  3GMZ A;  3MMR A;  2VQJ A;  1P8S A;  1T4P A;  3THJ A;  2VQQ A;  4QA2 A;  4IXV A;  4HXQ A;  4Q3T A;  5IX0 A;  4CBY A;  3MAX A;  3GN0 A;  3DJ8 A;  5DC8 A;  3E6K A;  4Q40 A;  4GSV A;  4RHK A;  1T4R A;  1ZPG A;  4GWC A;  5HJ9 A;  3THE A;  4DZ4 A;  5G17 A;  1WOI A;  4IE1 A;  3C0Z A;  3MFW A;  5EFB D;  3RQD A;  3MEN A;  4Q42 A;  4ZUO A;  2VQV A;  3MZ4 A;  2VCG A;  4GWD A;  3F80 A;  3E8Z A;  1T4S A;  5EEK A;  1TA1 A;  4BZ5 A;  2EF4 A;  5BWZ A;  1T5G A;  5CEV A;  3MJL A;  4MYK A;  4Q3V A;  5EEF A;  4RN1 A;  5EFH A;  4IXU A;  5EEM A;  4QA5 A;  5G0Y A;  1R1O A;  1ZZ1 A;  1TBJ A;  4Q3P A;  4CQF A;  3SFH A;  3SKK A;  1ZZ0 A;  4IE2 A;  3ZNR A;  1XFK A;  4ZUR A;  3MZ7 A;  4BZ8 A;  2VQM A;  5G0J A;  3SL0 A;  2RLA A;  3EWF A;  5G0H A;  3ZNS A;  5G10 A;  2PHO A;  5G0I A;  4BZ7 A;  4ZUP A;  1GQ7 A;  5EF8 A;  4RHQ A;  1T69 A;  1C3R A;  1CEV A;  1T4T A;  3C0Y A;  3MFV A;  5G1C A;  1GQ6 A;  4RHI A;  5G1A A;  4Q3U A;  5G13 A;  5THV A;  3KV2 A;  4FCK A;  5A2S A;  1P8P A;  4LY1 A;  5D1D A;  5EFK B;  2CEV A;  3THH A;  3Q9F A;  1HQG A;  4GSZ A;  5G0G A;  5D1C A;  4BKX B;  5G1B A;  5HJA A;  5DC5 A;  1T5F A;  4GSM A;  3F06 A;  3TH7 A;  3LP4 A;  5DC7 A;  1T64 A;  3NIO A;  5RLA A;  3Q9C A;  5FCW A;  4QA1 A;  5THS A;  4IE3 A;  2EIV A;  2V5X A;  3LHL A;  4QA4 A;  2A0M A;  4RN0 A;  5IWG A;  3M1R A;  2AEB A;  1RLA A;  1ZPE A;  4RN2 A;  2PHA A;  1VKG A;  2V5W A;  4G3H A;  1C3S A;  3E9B A;  4RHM A;  5EFJ D;  1HQX A;  5THT A;  1C3P A;  4CBT A;  4MYN A;  4Q41 A;  5EF7 A;  2EF5 A;  4HZE A;  3F0R A;  1WVA A;  1PQ3 A;  1T67 A;  1P8M A;  3SFF A;  5EEI A;  3SL1 A;  1D3V A;  1WOH A;  5G11 A;  3Q9B A;  3CEV A;  4FCI A;  4QA6 A;  4A69 A;  1P8O A;  5THU A;  2VQO A;  3E8Q A;  3NIQ A;  1HQH A;  2GH6 A; 
#chains in the Genus database with same CATH homology
 4IU5 A;  3LP7 A;  2PLL A;  4MXR A;  4Q3Q A;  4Q3R C;  1HQ5 A;  3E6V A;  3PZL A;  1HQF A;  1TBL A;  1WVB A;  1TBH A;  4ITY A;  4IU4 A;  4IU1 A;  4RLA A;  3TF3 A;  4IU0 A;  4MYF A;  4CEV A;  4I06 A;  4Q3R A;  4MYL A;  3SJT A;  1P8R A;  4Q3S A;  4RHL A;  1P8N A;  4RHJ A;  3RLA A;  4HWW A;  1P8Q A;  1WOG A;  2ZAV A;  3NIP A;  3GMZ A;  3MMR A;  1P8S A;  1T4P A;  3THJ A;  4IXV A;  4HXQ A;  4Q3T A;  3GN0 A;  3DJ8 A;  3E6K A;  4Q40 A;  4GSV A;  4RHK A;  1T4R A;  1ZPG A;  4GWC A;  5HJ9 A;  3THE A;  4DZ4 A;  1WOI A;  4IE1 A;  3MFW A;  4Q42 A;  4GWD A;  3F80 A;  3E8Z A;  1T4S A;  5CEV A;  1TA1 A;  2EF4 A;  1T5G A;  3MJL A;  4MYK A;  4Q3V A;  4IXU A;  1R1O A;  1TBJ A;  4Q3P A;  3SKK A;  4IE2 A;  1XFK A;  3SL0 A;  2RLA A;  2PHO A;  1GQ7 A;  4RHQ A;  1CEV A;  1T4T A;  3MFV A;  1GQ6 A;  4RHI A;  4Q3U A;  3KV2 A;  4FCK A;  1P8P A;  2CEV A;  3THH A;  1HQG A;  4GSZ A;  5HJA A;  4GSM A;  1T5F A;  3TH7 A;  3NIO A;  5RLA A;  4IE3 A;  2EIV A;  3LHL A;  2A0M A;  3M1R A;  2AEB A;  1RLA A;  1ZPE A;  2PHA A;  4G3H A;  3E9B A;  4RHM A;  1HQX A;  1P8O A;  4MYN A;  4Q41 A;  2EF5 A;  4HZE A;  1WVA A;  1PQ3 A;  1P8M A;  3SL1 A;  1D3V A;  1WOH A;  4FCI A;  3CEV A;  3LP4 A;  3E8Q A;  3NIQ A;  1HQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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