3FFKA

Crystal structure of human gelsolin domains g1-g3 bound to actin
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
347
structure length
347
Chain Sequence
EHPEFLKAGKEPGLQIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQRLFQVKGRRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAGTEDTAKEDAANRKLAKLYKVSNGAGTMSVSLVADENPFAQGALKSEDCFILDHGKDGKIFVWKGKQANTEERKAALKTASDFITKMDYPKQTQVSVLPEGGETPLFKQFFKNWRDPDQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords plasma gelsolin
publication title Ca2+ binding by domain 2 plays a critical role in the activation and stabilization of gelsolin.
pubmed doi rcsb
source organism Homo sapiens
total genus 105
structure length 347
sequence length 347
chains with identical sequence D
ec nomenclature
pdb deposition date 2008-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00626 Gelsolin Gelsolin repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffkA02
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffkA01
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3ffkA03
1M4JA 4Z94G 5KYYB 2L72A 1WFSA 1EQYS 2LJ8A 3EFOB 3EH1A 1DEJS 2MP4A 4KEDA 4S10C 3Q2BA 4LIZA 3EGDB 1VFQA 2FH2A 5FAEA 2VIKA 5HVKD 1M2VB 1YAGG 1T3XA 3L50A 1QPVA 1J72A 3EG9B 1COFA 1T3YA 1VKKA 2XFAA 2HD7A 4CBUG 3A5NS 5KYWB 2NUPA 1AK6A 5L6WC 1JHWA 1RGIG 1NMDG 2MV2A 1UDMA 5A1MA 3CJCG 2KVKA 1MDUA 4CBWG 4PKGG 5KYXA 1PD1A 1P8XA 2XF1A 5IVUA 1D0NA 4KEFA 1Q8GA 2MOTA 2QTVA 1HQZ1 2NUTA 1SVQA 2VILA 3DAWB 4PKHB 2VACA 2FH3A 1TMWA 3CJBG 3EGXA 3A5MS 4JD2H 1T44G 1V6FA 1SVRA 2FH1A 2W0IA 5KYUA 3TU5B 5KYYA 1ESVS 1M2OA 1NM1G 2NUPB 3EFOA 4KEEA 1H1VG 3A5LS 3EH2A 1PD0A 1F7SA 5HVKB 1AHQA 1CNUA 1C0GS 2FF3A 1Q8XA 4PKIG 2I2QA 3CI5G 2LLFA 2D8BA 1CFYA 2FF6G 2FH4A 3FFKA 1X67A 1PCXA 2LXXA 5DD2A 1KCQA 1P8ZG 5KYUB 1YVNG 3CIPG 1D4XG 1AK7A 5KYNA 1C0FS 3FFNA 5FAFA 3A5OS 2FGHA 1WNJA 1SVYA 3EGDA 5KYXB 1T2LA 1WM4A 1M2VA 1TVJA 3FG7A 3FG6A 3EG9A 1NLVG 1NPHA 4CBXG 2NUTB 5KYWA 3EGXB 4BEX1
chains in the Genus database with same CATH superfamily
1M4JA 4Z94G 5KYYB 2L72A 1WFSA 1EQYS 2LJ8A 3EFOB 3EH1A 1DEJS 2MP4A 4KEDA 4S10C 3Q2BA 4LIZA 3EGDB 1VFQA 2FH2A 5FAEA 2VIKA 5HVKD 1M2VB 1YAGG 1T3XA 3L50A 1QPVA 1J72A 3EG9B 1COFA 1T3YA 1VKKA 2XFAA 2HD7A 4CBUG 3A5NS 5KYWB 2NUPA 1AK6A 5L6WC 1JHWA 1RGIG 1NMDG 2MV2A 1UDMA 5A1MA 3CJCG 2KVKA 1MDUA 4CBWG 4PKGG 5KYXA 1PD1A 1P8XA 2XF1A 5IVUA 1D0NA 4KEFA 1Q8GA 2MOTA 2QTVA 1HQZ1 2NUTA 1SVQA 2VILA 3DAWB 4PKHB 2VACA 2FH3A 1TMWA 3CJBG 3EGXA 3A5MS 4JD2H 1T44G 1V6FA 1SVRA 2FH1A 2W0IA 5KYUA 3TU5B 5KYYA 1ESVS 1M2OA 1NM1G 2NUPB 3EFOA 4KEEA 1H1VG 3A5LS 3EH2A 1PD0A 1F7SA 5HVKB 1AHQA 1CNUA 1C0GS 2FF3A 1Q8XA 4PKIG 2I2QA 3CI5G 2LLFA 2D8BA 1CFYA 2FF6G 2FH4A 3FFKA 1X67A 1PCXA 2LXXA 5DD2A 1KCQA 1P8ZG 5KYUB 1YVNG 3DA7A 3CIPG 1D4XG 1AK7A 5KYNA 1C0FS 3FFNA 5FAFA 3A5OS 2FGHA 1WNJA 1SVYA 3EGDA 5KYXB 1T2LA 1WM4A 1M2VA 1TVJA 3FG7A 3FG6A 3EG9A 1NLVG 1NPHA 4CBXG 2NUTB 5KYWA 3EGXB 4BEX1
chains in the Genus database with same CATH topology
1M4JA 4Z94G 5KYYB 2L72A 1WFSA 1EQYS 2LJ8A 3EFOB 3EH1A 1DEJS 2MP4A 4KEDA 4S10C 3Q2BA 4LIZA 3EGDB 1VFQA 2FH2A 5FAEA 2VIKA 5HVKD 1M2VB 1YAGG 1T3XA 3L50A 1QPVA 1J72A 3EG9B 1COFA 1T3YA 1VKKA 2XFAA 2HD7A 4CBUG 3A5NS 5KYWB 2NUPA 1AK6A 5L6WC 1JHWA 1RGIG 1NMDG 2MV2A 1UDMA 5A1MA 3CJCG 2KVKA 1MDUA 4CBWG 4PKGG 5KYXA 1PD1A 1P8XA 2XF1A 5IVUA 1D0NA 4KEFA 1Q8GA 2MOTA 2QTVA 1HQZ1 2NUTA 1SVQA 2VILA 3DAWB 4PKHB 2VACA 2FH3A 1TMWA 3CJBG 3EGXA 3A5MS 4JD2H 1T44G 1V6FA 1SVRA 2FH1A 2W0IA 5KYUA 3TU5B 5KYYA 1ESVS 1M2OA 1NM1G 2NUPB 3EFOA 4KEEA 1H1VG 3A5LS 3EH2A 1PD0A 1F7SA 5HVKB 1AHQA 1CNUA 1C0GS 2FF3A 1Q8XA 4PKIG 2I2QA 3CI5G 2LLFA 2D8BA 1CFYA 2FF6G 2FH4A 3FFKA 1X67A 1PCXA 2LXXA 5DD2A 1KCQA 1P8ZG 5KYUB 1YVNG 3DA7A 3CIPG 1D4XG 1AK7A 5KYNA 1C0FS 3FFNA 5FAFA 3A5OS 2FGHA 1WNJA 1SVYA 3EGDA 5KYXB 1T2LA 1WM4A 1M2VA 1TVJA 3FG7A 3FG6A 3EG9A 1NLVG 1NPHA 4CBXG 2NUTB 5KYWA 3EGXB 4BEX1
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M4J A;  4Z94 G;  5KYY B;  2L72 A;  1WFS A;  1EQY S;  2LJ8 A;  3EFO B;  3EH1 A;  1DEJ S;  2MP4 A;  4KED A;  4S10 C;  3Q2B A;  4LIZ A;  3EGD B;  1VFQ A;  2FH2 A;  5FAE A;  2VIK A;  5HVK D;  1M2V B;  1YAG G;  1T3X A;  3L50 A;  1QPV A;  1J72 A;  3EG9 B;  1COF A;  1T3Y A;  1VKK A;  2XFA A;  2HD7 A;  4CBU G;  3A5N S;  5KYW B;  2NUP A;  1AK6 A;  5L6W C;  1JHW A;  1RGI G;  1NMD G;  2MV2 A;  1UDM A;  5A1M A;  3CJC G;  2KVK A;  1MDU A;  4CBW G;  4PKG G;  5KYX A;  1PD1 A;  1P8X A;  2XF1 A;  5IVU A;  1D0N A;  4KEF A;  1Q8G A;  2MOT A;  2QTV A;  1HQZ 1;  2NUT A;  1SVQ A;  2VIL A;  3DAW B;  4PKH B;  2VAC A;  2FH3 A;  1TMW A;  3CJB G;  3EGX A;  3A5M S;  4JD2 H;  1T44 G;  1V6F A;  1SVR A;  2FH1 A;  2W0I A;  5KYU A;  3TU5 B;  5KYY A;  1ESV S;  1M2O A;  1NM1 G;  2NUP B;  3EFO A;  4KEE A;  1H1V G;  3A5L S;  3EH2 A;  1PD0 A;  1F7S A;  5HVK B;  1AHQ A;  1CNU A;  1C0G S;  2FF3 A;  1Q8X A;  4PKI G;  2I2Q A;  3CI5 G;  2LLF A;  2D8B A;  1CFY A;  2FF6 G;  2FH4 A;  3FFK A;  1X67 A;  1PCX A;  2LXX A;  5DD2 A;  1KCQ A;  1P8Z G;  5KYU B;  1YVN G;  3CIP G;  1D4X G;  1AK7 A;  5KYN A;  1C0F S;  3FFN A;  5FAF A;  3A5O S;  2FGH A;  1WNJ A;  1SVY A;  3EGD A;  5KYX B;  1T2L A;  1WM4 A;  1M2V A;  1TVJ A;  3FG7 A;  3FG6 A;  3EG9 A;  1NLV G;  1NPH A;  4CBX G;  2NUT B;  5KYW A;  3EGX B;  4BEX 1; 
#chains in the Genus database with same CATH topology
 1M4J A;  4Z94 G;  5KYY B;  2L72 A;  1WFS A;  1EQY S;  2LJ8 A;  3EFO B;  3EH1 A;  1DEJ S;  2MP4 A;  4KED A;  4S10 C;  3Q2B A;  4LIZ A;  3EGD B;  1VFQ A;  2FH2 A;  5FAE A;  2VIK A;  5HVK D;  1M2V B;  1YAG G;  1T3X A;  3L50 A;  1QPV A;  1J72 A;  3EG9 B;  1COF A;  1T3Y A;  1VKK A;  2XFA A;  2HD7 A;  4CBU G;  3A5N S;  5KYW B;  2NUP A;  1AK6 A;  5L6W C;  1JHW A;  1RGI G;  1NMD G;  2MV2 A;  1UDM A;  5A1M A;  3CJC G;  2KVK A;  1MDU A;  4CBW G;  4PKG G;  5KYX A;  1PD1 A;  1P8X A;  2XF1 A;  5IVU A;  1D0N A;  4KEF A;  1Q8G A;  2MOT A;  2QTV A;  1HQZ 1;  2NUT A;  1SVQ A;  2VIL A;  3DAW B;  4PKH B;  2VAC A;  2FH3 A;  1TMW A;  3CJB G;  3EGX A;  3A5M S;  4JD2 H;  1T44 G;  1V6F A;  1SVR A;  2FH1 A;  2W0I A;  5KYU A;  3TU5 B;  5KYY A;  1ESV S;  1M2O A;  1NM1 G;  2NUP B;  3EFO A;  4KEE A;  1H1V G;  3A5L S;  3EH2 A;  1PD0 A;  1F7S A;  5HVK B;  1AHQ A;  1CNU A;  1C0G S;  2FF3 A;  1Q8X A;  4PKI G;  2I2Q A;  3CI5 G;  2LLF A;  2D8B A;  1CFY A;  2FF6 G;  2FH4 A;  3FFK A;  1X67 A;  1PCX A;  2LXX A;  5DD2 A;  1KCQ A;  1P8Z G;  5KYU B;  1YVN G;  3DA7 A;  3CIP G;  1D4X G;  1AK7 A;  5KYN A;  1C0F S;  3FFN A;  5FAF A;  3A5O S;  2FGH A;  1WNJ A;  1SVY A;  3EGD A;  5KYX B;  1T2L A;  1WM4 A;  1M2V A;  1TVJ A;  3FG7 A;  3FG6 A;  3EG9 A;  1NLV G;  1NPH A;  4CBX G;  2NUT B;  5KYW A;  3EGX B;  4BEX 1; 
#chains in the Genus database with same CATH homology
 1M4J A;  4Z94 G;  5KYY B;  2L72 A;  1WFS A;  1EQY S;  2LJ8 A;  3EFO B;  3EH1 A;  1DEJ S;  2MP4 A;  4KED A;  4S10 C;  3Q2B A;  4LIZ A;  3EGD B;  1VFQ A;  2FH2 A;  5FAE A;  2VIK A;  5HVK D;  1M2V B;  1YAG G;  1T3X A;  3L50 A;  1QPV A;  1J72 A;  3EG9 B;  1COF A;  1T3Y A;  1VKK A;  2XFA A;  2HD7 A;  4CBU G;  3A5N S;  5KYW B;  2NUP A;  1AK6 A;  5L6W C;  1JHW A;  1RGI G;  1NMD G;  2MV2 A;  1UDM A;  5A1M A;  3CJC G;  2KVK A;  1MDU A;  4CBW G;  4PKG G;  5KYX A;  1PD1 A;  1P8X A;  2XF1 A;  5IVU A;  1D0N A;  4KEF A;  1Q8G A;  2MOT A;  2QTV A;  1HQZ 1;  2NUT A;  1SVQ A;  2VIL A;  3DAW B;  4PKH B;  2VAC A;  2FH3 A;  1TMW A;  3CJB G;  3EGX A;  3A5M S;  4JD2 H;  1T44 G;  1V6F A;  1SVR A;  2FH1 A;  2W0I A;  5KYU A;  3TU5 B;  5KYY A;  1ESV S;  1M2O A;  1NM1 G;  2NUP B;  3EFO A;  4KEE A;  1H1V G;  3A5L S;  3EH2 A;  1PD0 A;  1F7S A;  5HVK B;  1AHQ A;  1CNU A;  1C0G S;  2FF3 A;  1Q8X A;  4PKI G;  2I2Q A;  3CI5 G;  2LLF A;  2D8B A;  1CFY A;  2FF6 G;  2FH4 A;  3FFK A;  1X67 A;  1PCX A;  2LXX A;  5DD2 A;  1KCQ A;  1P8Z G;  5KYU B;  1YVN G;  3DA7 A;  3CIP G;  1D4X G;  1AK7 A;  5KYN A;  1C0F S;  3FFN A;  5FAF A;  3A5O S;  2FGH A;  1WNJ A;  1SVY A;  3EGD A;  5KYX B;  1T2L A;  1WM4 A;  1M2V A;  1TVJ A;  3FG7 A;  3FG6 A;  3EG9 A;  1NLV G;  1NPH A;  4CBX G;  2NUT B;  5KYW A;  3EGX B;  4BEX 1; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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