3FPNA

Crystal structure of uvra-uvrb interaction domains
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
118
structure length
118
Chain Sequence
SHMTIEQMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dna binding protein
molecule keywords Geobacillus stearothermophilus UvrA interaction domain
publication title A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 28
structure length 118
sequence length 118
ec nomenclature
pdb deposition date 2009-01-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.20 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase 3fpnA00
4QGBA 1AD2A 3U56A 4QVIA 1I2AA 3U4MA 4QG3A 5DM60 2HW8A 5DM70 3TG8A 1U63A 3FPNA 3ZQJA 1DWUA 4REOA 4DFCB 3QOYA 1CJSA 4LQ4A 4F9TA 3UMYA 1ZHOA 1MZPA
chains in the Genus database with same CATH superfamily
2V67I 4QGBA 1AD2A 1UWAC 3U56A 4F0MB 1SVDM 2FHZA 1I2AA 4QVIA 1UZHC 1IR1S 3ZXWB 3U4MA 4QG3A 1WDDS 1RXOC 4RUBS 1GK8I 1AA1C 8RUCI 5DM60 2HW8A 1RLCS 5DM70 1RCOC 2V68I 1UW9C 3AXKS 1UPMC 2YBVB 1BXNI 3FPNA 3ZQJA 1RBLI 1UZDC 1DWUA 4REOA 4DFCB 1EJ7S 1RLDS 2V6AI 2V69I 1IR21 2DFXI 3QOYA 1CJSA 3RUBS 3TG8A 1IWAB 1BWVS 4HHHS 4LQ4A 1U63A 1RSCI 1UPPI 4F9TA 4MKVS 3UMYA 3AXMS 2V63I 2VDHI 1RBOC 4F0HB 4F0KB 2VDII 1AUSS 1ZHOA 1RCXC 1MZPA
chains in the Genus database with same CATH topology
4QGBA 1AD2A 3U56A 2FHZA 1I2AA 4QVIA 3U4MA 4QG3A 5DM60 2HW8A 5DM70 3TG8A 1U63A 3FPNA 3ZQJA 1DWUA 4REOA 4DFCB 2DFXI 3QOYA 1CJSA 4LQ4A 4F9TA 3UMYA 1ZHOA 1MZPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QGB A;  1AD2 A;  3U56 A;  4QVI A;  1I2A A;  3U4M A;  4QG3 A;  5DM6 0;  2HW8 A;  5DM7 0;  3TG8 A;  1U63 A;  3FPN A;  3ZQJ A;  1DWU A;  4REO A;  4DFC B;  3QOY A;  1CJS A;  4LQ4 A;  4F9T A;  3UMY A;  1ZHO A;  1MZP A; 
#chains in the Genus database with same CATH topology
 2V67 I;  4QGB A;  1AD2 A;  1UWA C;  3U56 A;  4F0M B;  1SVD M;  2FHZ A;  1I2A A;  4QVI A;  1UZH C;  1IR1 S;  3ZXW B;  3U4M A;  4QG3 A;  1WDD S;  1RXO C;  4RUB S;  1GK8 I;  1AA1 C;  8RUC I;  5DM6 0;  2HW8 A;  1RLC S;  5DM7 0;  1RCO C;  2V68 I;  1UW9 C;  3AXK S;  1UPM C;  2YBV B;  1BXN I;  3FPN A;  3ZQJ A;  1RBL I;  1UZD C;  1DWU A;  4REO A;  4DFC B;  1EJ7 S;  1RLD S;  2V6A I;  2V69 I;  1IR2 1;  2DFX I;  3QOY A;  1CJS A;  3RUB S;  3TG8 A;  1IWA B;  1BWV S;  4HHH S;  4LQ4 A;  1U63 A;  1RSC I;  1UPP I;  4F9T A;  4MKV S;  3UMY A;  3AXM S;  2V63 I;  2VDH I;  1RBO C;  4F0H B;  4F0K B;  2VDI I;  1AUS S;  1ZHO A;  1RCX C;  1MZP A; 
#chains in the Genus database with same CATH homology
 4QGB A;  1AD2 A;  3U56 A;  2FHZ A;  1I2A A;  4QVI A;  3U4M A;  4QG3 A;  5DM6 0;  2HW8 A;  5DM7 0;  3TG8 A;  1U63 A;  3FPN A;  3ZQJ A;  1DWU A;  4REO A;  4DFC B;  2DFX I;  3QOY A;  1CJS A;  4LQ4 A;  4F9T A;  3UMY A;  1ZHO A;  1MZP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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