3G29A

Crystal structure of the c-terminal domain of the rous sarcoma virus capsid protein: d179n mutant, neutral ph
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
77
structure length
77
Chain Sequence
AGPWADIMQGPSESFVDFANRLIKAVEGSNLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Gag polyprotein
publication title Proton-linked dimerization of a retroviral capsid protein initiates capsid assembly
pubmed doi rcsb
source organism Rous sarcoma virus
total genus 24
structure length 77
sequence length 77
chains with identical sequence B
ec nomenclature ec 3.4.23.-:
pdb deposition date 2009-01-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.30 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 3g29A00
3NTEA 5JPAA 1BAJA 3MGEA 2BUOA 1AUMA 3DS1A 4U0DA 4XFYA 4XFZA 4XRQA 1EIAA 2M8PA 4XFXA 3P05A 5I4TG 2JYLA 2XV6A 3G28A 3G26A 2XXMA 2M8LA 3DS5A 3G1GA 3G0VA 4WYMA 5DCKA 2XT1A 4XROA 4U0CA 4COCA 3H47A 3DTJA 1D1DA 3G1IA 3H4EA 2M8NA 1QRJA 2LF4A 4PH1A 1E6JP 3DS2A 3DS3A 1EOQA 3DS4A 2JYGA 3DS0A 3DPHA 3G29A 4U0FA 1A8OA 5HGLA 2ONTA 2KODA 2L6EA 3G21A 4IPYA 4QNBA 4U0EA 4U0BA 3VRLC 4PH0A 5HGNA 5HGOA 2JO0A 4U0AA 4COPA 2EIAA 3LRYA 1A43A 5HGMA 4M0IA
chains in the Genus database with same CATH superfamily
5KP8B 1VQPP 1HY8A 2MD9A 1S72P 1RO0A 2LMLA 2L0QA 1YIJP 4COCA 3CPWO 3Q20A 2LPKA 3G21A 3VRLC 2MVUA 2VSQA 7CEIA 5F2NA 5KP6B 4H2WC 2JO0A 4F37A 1VHNA 2BUOA 1M1KQ 1DV5A 2GZFA 2FVAA 2GDXA 1AF8A 1RNIA 3CCJP 2XXMA 3CCSP 2FAEA 2KG6A 2L22A 1EOQA 2PY8A 4U0FA 1GXGA 2ONTA 1M74A 1VQNP 2PEQA 2JAZA 1YITP 3CCMP 2K5XA 5HV8A 1EIAA 4XFXA 2CWOA 2JGPA 3H47A 1Q81Q 3CCLP 1YHQP 5KP7B 3RG6C 3G29A 2L6EA 1ACPA 2QA4P 2VLNA 2CG5B 3I55P 1KC8Q 1KLPA 2LIWA 3CC4P 1Z6MA 2LTEA 2K0XA 2MVVA 2ERHA 2PEJA 1ZMBA 3DTJA 2NO8A 2LF4A 2L4BA 1E6JP 2ROQA 2N50A 4PWVB 2MF4A 2PENA 4XFYA 3NTEA 2VLOA 2GZIA 5F2OA 2XZ1C 1YJ9P 5CZDB 4XRQA 2JU2A 2JYLA 3G6EP 3CCRP 4U0CA 1FR2A 2Z44A 2EHTA 1W2BO 2M5RA 4MRTC 4COPA 1EMVA 1HQBA 2FADA 1M90Q 5EJDA 2AFEA 4U0DA 2JQ4A 2KOQA 2LOLA 5DCKA 3G0VA 5BS2A 3I56P 3U43A 4XROA 2AF8A 1D1DA 3DS0A 5HGLA 1CEIA 2KG9A 2KGAA 4BPHA 2MR7A 1YI2P 5EW5E 5HGMA 1VQ6P 3HYBA 2KGDA 2CNRA 4CA3A 1T8KA 1IUQA 1YJNP 4WYMA 1IMQA 1QVFO 3CC7P 3DS4A 3DS3A 1VQLP 4PH0A 2N5HA 2DGYA 1K30A 1N8RQ 3LRYA 4IZ6A 3HZQA 1BXIA 3DS1A 4BPGA 1OR5A 1GXHA 3EJDA 3G28A 3WBHA 1QRJA 3DS2A 1VQOP 1X3OA 2CQ8A 2EG5A 3B5IA 4QNBA 4IPYA 2FVEA 4U0EA 1GPJA 5HGOA 3GJNA 2EIAA 1Q86Q 1KQSO 2MY5A 3OW2O 2LKIA 2GZEA 3EJBA 4NEOA 1DNYA 1L0IA 2M8LA 3CMEP 4UHPB 1NQ4A 2FQ1A 2E1MA 4GR2A 3CCEP 2OTLP 5HGNA 4GR6A 2PNGA 4U0AA 3CE7A 3CCUP 2KG8A 1VKUA 2KOSA 2BHVA 2Z45A 3CMAP 3CC2P 3G1GA 2QNWA 3GZLA 1VQ4P 2AVAA 2P9XA 2FQ2A 5JPAA 2JU1A 4XFZA 3P05A 2OTJP 2PEIA 1JJ2O 2XT1A 2MR8A 3H4EA 5BS1A 3G71P 2XZ0D 2GZGA 3CD6P 2KWLA 2GZJA 4H2XC 1E0HA 4BPFA 1Q7YQ 1A43A 2Z46A 1L0HA 3CCVP 1AUMA 3B4QA 2KGEA 3H0DA 2PEMA 3EJEA 1RO2A 2KORA 1VQ7P 3G1IA 2FQ0A 2QEXP 5HVCA 2FACA 2K0DX 2PEKA 3GKLC 3E2DA 2EFJA 1K73Q 2PEOA 2N5IA 2XV6A 2N98A 3RG2A 1Q82Q 1M6NA 2LL8A 4QKOA 3NY7B 1AYIA 1NJIQ 3DPHA 2EHSA 4HKGA 1QVGO 2K2QA 1K8AQ 2LIUA 1IMPA 1BAJA 2GYKA 2OARA 3MGEA 1VQ9P 2KOOA 1VQ8P 4R0MA 2KW2A 2AFDA 2M8NA 4PH1A 3GZMA 2VLQA 1A8OA 2K0YA 2K93A 4U0BA 3M1MA 2CGQA 2N6YA 3G4SP 2L9FA 3CXCO 1K9MQ 5I4TG 1VQ5P 3G26A 1VQMP 2N6ZA 2DNWA 3LMOA 5F2KA 2X2BA 2FVFA 2JYGA 2K92A 2KOPA 3CCQP 2KODA 1KD1Q 4DG9A 2WPTA 1UNKA 2KR5A 1UJZA 2K94A 2JBGA 1F80D 4M0IA 4PXHB 2M8PA 2FHSC 1VQKP 2GDYA 2GDWA 1M6EX 4H2YC 2JB0A 3DS5A 1YJWP 1MZ8A 1ZNVA 2KGCA 2VLPA
chains in the Genus database with same CATH topology
3E2DA 3NTEA 1Q86Q 2EFJA 1VQPP 5F2OA 1KQSO 1K73Q 1S72P 1YJ9P 3OW2O 4XRQA 1RO0A 2PEOA 2JYLA 2XV6A 2M8LA 3G6EP 1YIJP 1Q82Q 3CMEP 2E1MA 3CCRP 4U0CA 4COCA 4GR2A 1M6NA 3CCEP 2Z44A 2OTLP 3CPWO 3Q20A 1W2BO 5HGNA 1NJIQ 3DPHA 3G21A 4GR6A 3VRLC 5F2NA 2JO0A 4U0AA 4COPA 1QVGO 1K8AQ 3CCUP 1M90Q 1BAJA 2OARA 3MGEA 2BUOA 4U0DA 1M1KQ 1VQ9P 2BHVA 2Z45A 3CMAP 1RNIA 3CCJP 1VQ8P 3CC2P 2XXMA 3G1GA 5DCKA 3G0VA 5BS2A 3I56P 4XROA 3CCSP 1D1DA 2M8NA 1VQ4P 4PH1A 3DS0A 1EOQA 2PY8A 5HGLA 4U0FA 1A8OA 2ONTA 4U0BA 1M74A 3M1MA 1VQNP 2P9XA 2PEQA 1YITP 1YI2P 3CCMP 5HGMA 5JPAA 1VQ6P 3G4SP 4XFZA 1EIAA 4XFXA 3P05A 3HYBA 3CXCO 1K9MQ 5I4TG 2OTJP 1VQ5P 2PEIA 3G26A 1VQMP 1IUQA 1YJNP 4WYMA 1JJ2O 2CWOA 2XT1A 3H47A 5F2KA 1Q81Q 3H4EA 1QVFO 3CC7P 3CCLP 1YHQP 3DS4A 3DS3A 1VQLP 2JYGA 3RG6C 3G29A 5BS1A 3G71P 3CD6P 2L6EA 2KODA 4PH0A 3CCQP 2DGYA 1KD1Q 1K30A 2QA4P 1N8RQ 3LRYA 1Q7YQ 1A43A 2Z46A 3HZQA 4M0IA 3I55P 1KC8Q 3CCVP 1AUMA 3DS1A 3CC4P 2M8PA 1VQKP 3H0DA 1M6EX 2PEMA 3G28A 3WBHA 3DS5A 1RO2A 2PEJA 1ZMBA 3DTJA 1VQ7P 3G1IA 1QRJA 2LF4A 1YJWP 1E6JP 3DS2A 1VQOP 2QEXP 3B5IA 2EG5A 4QNBA 4IPYA 4U0EA 5HGOA 2PEKA 2EIAA 2PENA 4XFYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NTE A;  5JPA A;  1BAJ A;  3MGE A;  2BUO A;  1AUM A;  3DS1 A;  4U0D A;  4XFY A;  4XFZ A;  4XRQ A;  1EIA A;  2M8P A;  4XFX A;  3P05 A;  5I4T G;  2JYL A;  2XV6 A;  3G28 A;  3G26 A;  2XXM A;  2M8L A;  3DS5 A;  3G1G A;  3G0V A;  4WYM A;  5DCK A;  2XT1 A;  4XRO A;  4U0C A;  4COC A;  3H47 A;  3DTJ A;  1D1D A;  3G1I A;  3H4E A;  2M8N A;  1QRJ A;  2LF4 A;  4PH1 A;  1E6J P;  3DS2 A;  3DS3 A;  1EOQ A;  3DS4 A;  2JYG A;  3DS0 A;  3DPH A;  3G29 A;  4U0F A;  1A8O A;  5HGL A;  2ONT A;  2KOD A;  2L6E A;  3G21 A;  4IPY A;  4QNB A;  4U0E A;  4U0B A;  3VRL C;  4PH0 A;  5HGN A;  5HGO A;  2JO0 A;  4U0A A;  4COP A;  2EIA A;  3LRY A;  1A43 A;  5HGM A;  4M0I A; 
#chains in the Genus database with same CATH topology
 5KP8 B;  1VQP P;  1HY8 A;  2MD9 A;  1S72 P;  1RO0 A;  2LML A;  2L0Q A;  1YIJ P;  4COC A;  3CPW O;  3Q20 A;  2LPK A;  3G21 A;  3VRL C;  2MVU A;  2VSQ A;  7CEI A;  5F2N A;  5KP6 B;  4H2W C;  2JO0 A;  4F37 A;  1VHN A;  2BUO A;  1M1K Q;  1DV5 A;  2GZF A;  2FVA A;  2GDX A;  1AF8 A;  1RNI A;  3CCJ P;  2XXM A;  3CCS P;  2FAE A;  2KG6 A;  2L22 A;  1EOQ A;  2PY8 A;  4U0F A;  1GXG A;  2ONT A;  1M74 A;  1VQN P;  2PEQ A;  2JAZ A;  1YIT P;  3CCM P;  2K5X A;  5HV8 A;  1EIA A;  4XFX A;  2CWO A;  2JGP A;  3H47 A;  1Q81 Q;  3CCL P;  1YHQ P;  5KP7 B;  3RG6 C;  3G29 A;  2L6E A;  1ACP A;  2QA4 P;  2VLN A;  2CG5 B;  3I55 P;  1KC8 Q;  1KLP A;  2LIW A;  3CC4 P;  1Z6M A;  2LTE A;  2K0X A;  2MVV A;  2ERH A;  2PEJ A;  1ZMB A;  3DTJ A;  2NO8 A;  2LF4 A;  2L4B A;  1E6J P;  2ROQ A;  2N50 A;  4PWV B;  2MF4 A;  2PEN A;  4XFY A;  3NTE A;  2VLO A;  2GZI A;  5F2O A;  2XZ1 C;  1YJ9 P;  5CZD B;  4XRQ A;  2JU2 A;  2JYL A;  3G6E P;  3CCR P;  4U0C A;  1FR2 A;  2Z44 A;  2EHT A;  1W2B O;  2M5R A;  4MRT C;  4COP A;  1EMV A;  1HQB A;  2FAD A;  1M90 Q;  5EJD A;  2AFE A;  4U0D A;  2JQ4 A;  2KOQ A;  2LOL A;  5DCK A;  3G0V A;  5BS2 A;  3I56 P;  3U43 A;  4XRO A;  2AF8 A;  1D1D A;  3DS0 A;  5HGL A;  1CEI A;  2KG9 A;  2KGA A;  4BPH A;  2MR7 A;  1YI2 P;  5EW5 E;  5HGM A;  1VQ6 P;  3HYB A;  2KGD A;  2CNR A;  4CA3 A;  1T8K A;  1IUQ A;  1YJN P;  4WYM A;  1IMQ A;  1QVF O;  3CC7 P;  3DS4 A;  3DS3 A;  1VQL P;  4PH0 A;  2N5H A;  2DGY A;  1K30 A;  1N8R Q;  3LRY A;  4IZ6 A;  3HZQ A;  1BXI A;  3DS1 A;  4BPG A;  1OR5 A;  1GXH A;  3EJD A;  3G28 A;  3WBH A;  1QRJ A;  3DS2 A;  1VQO P;  1X3O A;  2CQ8 A;  2EG5 A;  3B5I A;  4QNB A;  4IPY A;  2FVE A;  4U0E A;  1GPJ A;  5HGO A;  3GJN A;  2EIA A;  1Q86 Q;  1KQS O;  2MY5 A;  3OW2 O;  2LKI A;  2GZE A;  3EJB A;  4NEO A;  1DNY A;  1L0I A;  2M8L A;  3CME P;  4UHP B;  1NQ4 A;  2FQ1 A;  2E1M A;  4GR2 A;  3CCE P;  2OTL P;  5HGN A;  4GR6 A;  2PNG A;  4U0A A;  3CE7 A;  3CCU P;  2KG8 A;  1VKU A;  2KOS A;  2BHV A;  2Z45 A;  3CMA P;  3CC2 P;  3G1G A;  2QNW A;  3GZL A;  1VQ4 P;  2AVA A;  2P9X A;  2FQ2 A;  5JPA A;  2JU1 A;  4XFZ A;  3P05 A;  2OTJ P;  2PEI A;  1JJ2 O;  2XT1 A;  2MR8 A;  3H4E A;  5BS1 A;  3G71 P;  2XZ0 D;  2GZG A;  3CD6 P;  2KWL A;  2GZJ A;  4H2X C;  1E0H A;  4BPF A;  1Q7Y Q;  1A43 A;  2Z46 A;  1L0H A;  3CCV P;  1AUM A;  3B4Q A;  2KGE A;  3H0D A;  2PEM A;  3EJE A;  1RO2 A;  2KOR A;  1VQ7 P;  3G1I A;  2FQ0 A;  2QEX P;  5HVC A;  2FAC A;  2K0D X;  2PEK A;  3GKL C;  3E2D A;  2EFJ A;  1K73 Q;  2PEO A;  2N5I A;  2XV6 A;  2N98 A;  3RG2 A;  1Q82 Q;  1M6N A;  2LL8 A;  4QKO A;  3NY7 B;  1AYI A;  1NJI Q;  3DPH A;  2EHS A;  4HKG A;  1QVG O;  2K2Q A;  1K8A Q;  2LIU A;  1IMP A;  1BAJ A;  2GYK A;  2OAR A;  3MGE A;  1VQ9 P;  2KOO A;  1VQ8 P;  4R0M A;  2KW2 A;  2AFD A;  2M8N A;  4PH1 A;  3GZM A;  2VLQ A;  1A8O A;  2K0Y A;  2K93 A;  4U0B A;  3M1M A;  2CGQ A;  2N6Y A;  3G4S P;  2L9F A;  3CXC O;  1K9M Q;  5I4T G;  1VQ5 P;  3G26 A;  1VQM P;  2N6Z A;  2DNW A;  3LMO A;  5F2K A;  2X2B A;  2FVF A;  2JYG A;  2K92 A;  2KOP A;  3CCQ P;  2KOD A;  1KD1 Q;  4DG9 A;  2WPT A;  1UNK A;  2KR5 A;  1UJZ A;  2K94 A;  2JBG A;  1F80 D;  4M0I A;  4PXH B;  2M8P A;  2FHS C;  1VQK P;  2GDY A;  2GDW A;  1M6E X;  4H2Y C;  2JB0 A;  3DS5 A;  1YJW P;  1MZ8 A;  1ZNV A;  2KGC A;  2VLP A; 
#chains in the Genus database with same CATH homology
 3E2D A;  3NTE A;  1Q86 Q;  2EFJ A;  1VQP P;  5F2O A;  1KQS O;  1K73 Q;  1S72 P;  1YJ9 P;  3OW2 O;  4XRQ A;  1RO0 A;  2PEO A;  2JYL A;  2XV6 A;  2M8L A;  3G6E P;  1YIJ P;  1Q82 Q;  3CME P;  2E1M A;  3CCR P;  4U0C A;  4COC A;  4GR2 A;  1M6N A;  3CCE P;  2Z44 A;  2OTL P;  3CPW O;  3Q20 A;  1W2B O;  5HGN A;  1NJI Q;  3DPH A;  3G21 A;  4GR6 A;  3VRL C;  5F2N A;  2JO0 A;  4U0A A;  4COP A;  1QVG O;  1K8A Q;  3CCU P;  1M90 Q;  1BAJ A;  2OAR A;  3MGE A;  2BUO A;  4U0D A;  1M1K Q;  1VQ9 P;  2BHV A;  2Z45 A;  3CMA P;  1RNI A;  3CCJ P;  1VQ8 P;  3CC2 P;  2XXM A;  3G1G A;  5DCK A;  3G0V A;  5BS2 A;  3I56 P;  4XRO A;  3CCS P;  1D1D A;  2M8N A;  1VQ4 P;  4PH1 A;  3DS0 A;  1EOQ A;  2PY8 A;  5HGL A;  4U0F A;  1A8O A;  2ONT A;  4U0B A;  1M74 A;  3M1M A;  1VQN P;  2P9X A;  2PEQ A;  1YIT P;  1YI2 P;  3CCM P;  5HGM A;  5JPA A;  1VQ6 P;  3G4S P;  4XFZ A;  1EIA A;  4XFX A;  3P05 A;  3HYB A;  3CXC O;  1K9M Q;  5I4T G;  2OTJ P;  1VQ5 P;  2PEI A;  3G26 A;  1VQM P;  1IUQ A;  1YJN P;  4WYM A;  1JJ2 O;  2CWO A;  2XT1 A;  3H47 A;  5F2K A;  1Q81 Q;  3H4E A;  1QVF O;  3CC7 P;  3CCL P;  1YHQ P;  3DS4 A;  3DS3 A;  1VQL P;  2JYG A;  3RG6 C;  3G29 A;  5BS1 A;  3G71 P;  3CD6 P;  2L6E A;  2KOD A;  4PH0 A;  3CCQ P;  2DGY A;  1KD1 Q;  1K30 A;  2QA4 P;  1N8R Q;  3LRY A;  1Q7Y Q;  1A43 A;  2Z46 A;  3HZQ A;  4M0I A;  3I55 P;  1KC8 Q;  3CCV P;  1AUM A;  3DS1 A;  3CC4 P;  2M8P A;  1VQK P;  3H0D A;  1M6E X;  2PEM A;  3G28 A;  3WBH A;  3DS5 A;  1RO2 A;  2PEJ A;  1ZMB A;  3DTJ A;  1VQ7 P;  3G1I A;  1QRJ A;  2LF4 A;  1YJW P;  1E6J P;  3DS2 A;  1VQO P;  2QEX P;  3B5I A;  2EG5 A;  4QNB A;  4IPY A;  4U0E A;  5HGO A;  2PEK A;  2EIA A;  2PEN A;  4XFY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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