3GITA

Crystal structure of a truncated acetyl-coa synthase
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
422
structure length
422
Chain Sequence
IKLDLPINFGPAFEGESIRKGDMYVEMGGNRTPAFELVRTVSESEITDGKIEVIGPDIDQIPEGSKLPLGILVDIYGRKMQADFEGVLERRIHDFINYGEGLWHTGQRNINWLRVSKDAVAKGFRFKNYGEILVAKMKEEFPAIVDRVQVTIFTDEAKVKEYMEVAREKYKERDDRMRGLTDETVDTFYSCVLCQSFAPNHVCIVTPERVGLCGAVSWLDAKASYEINHAGPNQPIPKEGEIDPIKGIWKSVNDYLYTASNRNLEQVCLYTLMENPMTSCGCFEAIMAILPECNGIMITTRDHAGMTPSGMTFSTLAGMIGGGTQTPGFMGIGRTYIVSKKFISADGGIARIVWMPKSLKDFLHDEVVRRSVEEGLGEDFIDKIADETIGTTVDEILPYLEEKGHPALTMDPIMRSHTSRGH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Carbon monoxide dehydrogenase/acetyl-CoA synthase subunit al
publication title Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica
pubmed doi rcsb
source organism Moorella thermoacetica
total genus 133
structure length 422
sequence length 422
chains with identical sequence B, C, D, E, F
ec nomenclature ec 2.3.1.169: CO-methylating acetyl-CoA synthase.
pdb deposition date 2009-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03598 CdhC CO dehydrogenase/acetyl-CoA synthase complex beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1650.10 Alpha Beta 2-Layer Sandwich Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3 3gitA01
3.40.970.20 Alpha Beta 3-Layer(aba) Sandwich Ribonuclease HI; Chain A Carbon monoxide dehydrogenase alpha subunit. Chain D, domain 4 3gitA02
3.40.1470.10 Alpha Beta 3-Layer(aba) Sandwich Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5 3gitA03
3S2XA 1OAOC 5H6WA 3I01M 3I04M 2Z8YM 3GITA 1RU3A 1MJGM
chains in the Genus database with same CATH superfamily
1QHKA 3S2XA 3PMQA 3BL4A 5H3XA 3DOAA 1OAOC 5H6WA 3I01M 3I04M 2Z8YM 3GITA 1RU3A 1MJGM 3BSUA
chains in the Genus database with same CATH topology
3S2XA 1OAOC 5H6WA 3I01M 3I04M 2Z8YM 3GITA 1RU3A 1MJGM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S2X A;  1OAO C;  5H6W A;  3I01 M;  3I04 M;  2Z8Y M;  3GIT A;  1RU3 A;  1MJG M; 
#chains in the Genus database with same CATH topology
 1QHK A;  3S2X A;  3PMQ A;  3BL4 A;  5H3X A;  3DOA A;  1OAO C;  5H6W A;  3I01 M;  3I04 M;  2Z8Y M;  3GIT A;  1RU3 A;  1MJG M;  3BSU A; 
#chains in the Genus database with same CATH homology
 3S2X A;  1OAO C;  5H6W A;  3I01 M;  3I04 M;  2Z8Y M;  3GIT A;  1RU3 A;  1MJG M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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