3GK7A

Crystal structure of 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords 4-Hydroxybutyrate CoA-transferase
publication title Crystal structure of 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum
pubmed doi rcsb
source organism Clostridium aminobutyricum
total genus 160
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 2.8.3.-:
pdb deposition date 2009-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3gk7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A03
1OOYA 2AHVA 2NRBA 1POIA 2AHWA 2AHUA 2NRCA 3CDKA 3EH7A 3D3UA 3QDQA 1OOZA 3K6MA 5DBNA 2OASA 3RRLB 1XR4A 2HJ0A 1M3EA 4KGBA 1OPEA 1POIB 3GK7A 3RRLA 3CDKB 3OXOA 5DBNB 3DLXA 1K6DA 1O9LA
chains in the Genus database with same CATH superfamily
3K50A 1J7XA 2AHVA 3LLOA 4HYLA 1WXXA 3OIRA 5EUUA 2AHWA 2NRCA 1FC9A 1OOZA 2KA5A 2ZO9B 4JC0A 1AUZA 2HJ0A 1TH8B 3DJAA 4KGBA 1OPEA 1VC1A 1BUZA 3C0KA 3AGDA 2ZOAA 3RRLA 1FCFA 4AE2A 3V97A 3DLXA 1K6DA 1O9LA 3DUPA 3ZTBA 1OOYA 1H4XA 3F43A 1POIA 3CDKA 3EH7A 5DBNA 3GVLA 2DXLA 1N6DA 1H4ZA 1T6RA 5EUWA 1N6EA 3IF5A 1M3EA 3D03A 1POIB 1TILB 3GHFA 3ZXNA 3IHAA 3OXOA 3DORA 1K32A 1V0FA 1BPLA 3MOGA 1FC7A 5EUZA 2B78A 2AHUA 2KLNA 1FC6A 1V0EA 3JU4A 3QDQA 3GMFA 4HIZA 1SBOA 1N6FA 2CWWA 3RRLB 3GVJA 1TIDB 3AGEA 1HF2A 1THNB 3NY7A 3GVKA 3GK7A 3CDKB 5DBNB 4DGHA 3V8VA 1H4YA 3LDFA 4DGFA 4AEJA 3OIZA 2NRBA 3VSEA 2DXNA 3D3UA 3MGLA 4XS5A 3K6MA 4QTPA 4GHNA 3IH9A 2OASA 4DMGA 1XR4A 2AS0A 4L1CA 5EUXA 1WXWA 4L8KA 3IH8A 3T6OA 3LKLA 5EZBA 5EUSA 3IHBA 2RRLA 2VY9A
chains in the Genus database with same CATH topology
1OOYA 2AHVA 2NRBA 1POIA 2AHWA 2AHUA 2NRCA 3CDKA 3EH7A 3D3UA 3QDQA 1OOZA 3K6MA 5DBNA 2OASA 3RRLB 1XR4A 2HJ0A 1M3EA 4KGBA 1OPEA 1POIB 3GK7A 3RRLA 3CDKB 3OXOA 5DBNB 3DLXA 1K6DA 1O9LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OOY A;  2AHV A;  2NRB A;  1POI A;  2AHW A;  2AHU A;  2NRC A;  3CDK A;  3EH7 A;  3D3U A;  3QDQ A;  1OOZ A;  3K6M A;  5DBN A;  2OAS A;  3RRL B;  1XR4 A;  2HJ0 A;  1M3E A;  4KGB A;  1OPE A;  1POI B;  3GK7 A;  3RRL A;  3CDK B;  3OXO A;  5DBN B;  3DLX A;  1K6D A;  1O9L A; 
#chains in the Genus database with same CATH topology
 3K50 A;  1J7X A;  2AHV A;  3LLO A;  4HYL A;  1WXX A;  3OIR A;  5EUU A;  2AHW A;  2NRC A;  1FC9 A;  1OOZ A;  2KA5 A;  2ZO9 B;  4JC0 A;  1AUZ A;  2HJ0 A;  1TH8 B;  3DJA A;  4KGB A;  1OPE A;  1VC1 A;  1BUZ A;  3C0K A;  3AGD A;  2ZOA A;  3RRL A;  1FCF A;  4AE2 A;  3V97 A;  3DLX A;  1K6D A;  1O9L A;  3DUP A;  3ZTB A;  1OOY A;  1H4X A;  3F43 A;  1POI A;  3CDK A;  3EH7 A;  5DBN A;  3GVL A;  2DXL A;  1N6D A;  1H4Z A;  1T6R A;  5EUW A;  1N6E A;  3IF5 A;  1M3E A;  3D03 A;  1POI B;  1TIL B;  3GHF A;  3ZXN A;  3IHA A;  3OXO A;  3DOR A;  1K32 A;  1V0F A;  1BPL A;  3MOG A;  1FC7 A;  5EUZ A;  2B78 A;  2AHU A;  2KLN A;  1FC6 A;  1V0E A;  3JU4 A;  3QDQ A;  3GMF A;  4HIZ A;  1SBO A;  1N6F A;  2CWW A;  3RRL B;  3GVJ A;  1TID B;  3AGE A;  1HF2 A;  1THN B;  3NY7 A;  3GVK A;  3GK7 A;  3CDK B;  5DBN B;  4DGH A;  3V8V A;  1H4Y A;  3LDF A;  4DGF A;  4AEJ A;  3OIZ A;  2NRB A;  3VSE A;  2DXN A;  3D3U A;  3MGL A;  4XS5 A;  3K6M A;  4QTP A;  4GHN A;  3IH9 A;  2OAS A;  4DMG A;  1XR4 A;  2AS0 A;  4L1C A;  5EUX A;  1WXW A;  4L8K A;  3IH8 A;  3T6O A;  3LKL A;  5EZB A;  5EUS A;  3IHB A;  2RRL A;  2VY9 A; 
#chains in the Genus database with same CATH homology
 1OOY A;  2AHV A;  2NRB A;  1POI A;  2AHW A;  2AHU A;  2NRC A;  3CDK A;  3EH7 A;  3D3U A;  3QDQ A;  1OOZ A;  3K6M A;  5DBN A;  2OAS A;  3RRL B;  1XR4 A;  2HJ0 A;  1M3E A;  4KGB A;  1OPE A;  1POI B;  3GK7 A;  3RRL A;  3CDK B;  3OXO A;  5DBN B;  3DLX A;  1K6D A;  1O9L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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