3GMJA

Crystal structure of mad mh2 domain
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
199
structure length
199
Chain Sequence
EPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNAISSVS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords Protein mothers against dpp
publication title Crystal structure of the MH2 domain of Drosophila Mad
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 54
structure length 199
sequence length 199
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03166 MH2 MH2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.10 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3gmjA00
1KHUA 5C4VA 5JEKA 1YGSA 5JEMA 1ZOQA 1MK2A 1U7FA 5BVIA 1MJSA 1KHXA 1DEVA 3DSHA 1MR1A 1QWTA 1J2FA 5JEJA 1U7FB 3GMJA 4R9PA 1U7VA 1DD1A 1G88A 5JERA 3A77A 5JELA 3DITA 1U7VB 5JEOA
chains in the Genus database with same CATH superfamily
2I2FA 1KHUA 4H87A 3FM8A 5JEKA 2BRFA 1MZKA 1J4PA 2JQJA 1MK2A 3VPYA 3T5PA 2JPEA 5BVIA 1MJSA 1K2NA 1Z0SA 2QVLA 3UNNA 3KT9A 3I6UA 3VA1A 1QU5A 5EJIA 5EJHA 4WRRA 3I0NA 2JKDA 1U0TA 3V8QA 1LGQA 3V7YA 1DMZA 4A4YA 1DD1A 1YT5A 1G88A 1GXCA 3HX1A 3ELVA 1K2MA 3S40A 2KB3A 1LGPA 4DY6A 2G1LA 3PFNA 3VZBA 1U7VB 5JEOA 1J4LA 3PO8A 2I2BA 1U0RA 4EJQA 2FF4A 2KKLA 3HUEA 3V8RA 1ZOQA 2XT9B 2KFUA 4EGXA 1UJXA 1YJ5C 2KB4A 3VA4A 1KHXA 1FHRA 2AFFA 1Y3IA 3I0MA 2FEZA 2I2DA 3V7WA 1K3NA 3VZCA 2BONA 2I2AA 1WV3A 1U7VA 3UNMA 2P1RA 2JQIA 3UOTA 2I29A 1K3QA 2A0TA 5DHRA 2CSWA 5DHPA 1UHTA 4WERA 1Z0ZA 5EJFA 3V8MA 3I6WA 2Q5FA 5C4VA 4HAOA 1Y3HA 5JEMA 2JQLA 1G3GA 1R21A 4A0EA 4D9VA 3GQSA 3DSHA 1MR1A 3ELSA 1QWTA 1J2FA 5DHTA 5JEJA 1U7FB 3UV0A 1G6GA 2AN1A 4R9PA 2PIEA 5DHUA 5DHSA 2I1WA 3UN0A 1SUWA 3A77A 3POAA 1FHQA 1K3JA 2LC1A 4KU0D 4JIVD 3V8PA 4L02A 3V80A 1Z0UA 3OUNA 3V8NA 1YGSA 2W3OA 4JONA 3V7UA 1U7FA 1J4QA 1J4KA 3MDBA 3AFOA 1DEVA 1J4OA 1YJMA 2QV7A 2I2CA 3VZDA 2EH0A 5EJGA 4QCJA 3GMJA 1WLNA 5E50A 5JERA 5DHQA 4JIWD 3HUFA 2XXSA 4V24A 2JGRA 3DITA 5JELA 5A8IA 4G2SA 5DJOA 3UMZA
chains in the Genus database with same CATH topology
1KHUA 4H87A 3FM8A 5JEKA 2BRFA 1MZKA 1J4PA 2JQJA 1MK2A 3VPYA 3T5PA 2JPEA 5BVIA 1MJSA 1K2NA 2QVLA 3UNNA 3KT9A 3I6UA 3VA1A 1QU5A 4WRRA 3I0NA 2JKDA 1LGQA 1DMZA 4A4YA 1DD1A 1G88A 1GXCA 3HX1A 3ELVA 1K2MA 3S40A 2KB3A 1LGPA 2G1LA 3VZBA 1U7VB 5JEOA 1J4LA 3PO8A 4EJQA 2FF4A 2KKLA 3HUEA 1ZOQA 2XT9B 2KFUA 4EGXA 1UJXA 1YJ5C 2KB4A 3VA4A 1KHXA 1FHRA 2AFFA 3I0MA 2FEZA 1K3NA 3VZCA 2BONA 1WV3A 1U7VA 3UNMA 2P1RA 2JQIA 3UOTA 1K3QA 2A0TA 2CSWA 1UHTA 4WERA 3I6WA 5C4VA 5JEMA 2JQLA 1G3GA 1R21A 4A0EA 4D9VA 3GQSA 3DSHA 1MR1A 3ELSA 1QWTA 1J2FA 5JEJA 1U7FB 3UV0A 1G6GA 4R9PA 2PIEA 3UN0A 3A77A 3POAA 1FHQA 1K3JA 2LC1A 4KU0D 4JIVD 4L02A 3OUNA 1YGSA 2W3OA 4JONA 1U7FA 1J4QA 1J4KA 3MDBA 1DEVA 1J4OA 1YJMA 2QV7A 3VZDA 2EH0A 4QCJA 3GMJA 1WLNA 5E50A 5JERA 4JIWD 3HUFA 2XXSA 4V24A 2JGRA 3DITA 5JELA 5A8IA 4G2SA 5DJOA 3UMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KHU A;  5C4V A;  5JEK A;  1YGS A;  5JEM A;  1ZOQ A;  1MK2 A;  1U7F A;  5BVI A;  1MJS A;  1KHX A;  1DEV A;  3DSH A;  1MR1 A;  1QWT A;  1J2F A;  5JEJ A;  1U7F B;  3GMJ A;  4R9P A;  1U7V A;  1DD1 A;  1G88 A;  5JER A;  3A77 A;  5JEL A;  3DIT A;  1U7V B;  5JEO A; 
#chains in the Genus database with same CATH topology
 2I2F A;  1KHU A;  4H87 A;  3FM8 A;  5JEK A;  2BRF A;  1MZK A;  1J4P A;  2JQJ A;  1MK2 A;  3VPY A;  3T5P A;  2JPE A;  5BVI A;  1MJS A;  1K2N A;  1Z0S A;  2QVL A;  3UNN A;  3KT9 A;  3I6U A;  3VA1 A;  1QU5 A;  5EJI A;  5EJH A;  4WRR A;  3I0N A;  2JKD A;  1U0T A;  3V8Q A;  1LGQ A;  3V7Y A;  1DMZ A;  4A4Y A;  1DD1 A;  1YT5 A;  1G88 A;  1GXC A;  3HX1 A;  3ELV A;  1K2M A;  3S40 A;  2KB3 A;  1LGP A;  4DY6 A;  2G1L A;  3PFN A;  3VZB A;  1U7V B;  5JEO A;  1J4L A;  3PO8 A;  2I2B A;  1U0R A;  4EJQ A;  2FF4 A;  2KKL A;  3HUE A;  3V8R A;  1ZOQ A;  2XT9 B;  2KFU A;  4EGX A;  1UJX A;  1YJ5 C;  2KB4 A;  3VA4 A;  1KHX A;  1FHR A;  2AFF A;  1Y3I A;  3I0M A;  2FEZ A;  2I2D A;  3V7W A;  1K3N A;  3VZC A;  2BON A;  2I2A A;  1WV3 A;  1U7V A;  3UNM A;  2P1R A;  2JQI A;  3UOT A;  2I29 A;  1K3Q A;  2A0T A;  5DHR A;  2CSW A;  5DHP A;  1UHT A;  4WER A;  1Z0Z A;  5EJF A;  3V8M A;  3I6W A;  2Q5F A;  5C4V A;  4HAO A;  1Y3H A;  5JEM A;  2JQL A;  1G3G A;  1R21 A;  4A0E A;  4D9V A;  3GQS A;  3DSH A;  1MR1 A;  3ELS A;  1QWT A;  1J2F A;  5DHT A;  5JEJ A;  1U7F B;  3UV0 A;  1G6G A;  2AN1 A;  4R9P A;  2PIE A;  5DHU A;  5DHS A;  2I1W A;  3UN0 A;  1SUW A;  3A77 A;  3POA A;  1FHQ A;  1K3J A;  2LC1 A;  4KU0 D;  4JIV D;  3V8P A;  4L02 A;  3V80 A;  1Z0U A;  3OUN A;  3V8N A;  1YGS A;  2W3O A;  4JON A;  3V7U A;  1U7F A;  1J4Q A;  1J4K A;  3MDB A;  3AFO A;  1DEV A;  1J4O A;  1YJM A;  2QV7 A;  2I2C A;  3VZD A;  2EH0 A;  5EJG A;  4QCJ A;  3GMJ A;  1WLN A;  5E50 A;  5JER A;  5DHQ A;  4JIW D;  3HUF A;  2XXS A;  4V24 A;  2JGR A;  3DIT A;  5JEL A;  5A8I A;  4G2S A;  5DJO A;  3UMZ A; 
#chains in the Genus database with same CATH homology
 1KHU A;  4H87 A;  3FM8 A;  5JEK A;  2BRF A;  1MZK A;  1J4P A;  2JQJ A;  1MK2 A;  3VPY A;  3T5P A;  2JPE A;  5BVI A;  1MJS A;  1K2N A;  2QVL A;  3UNN A;  3KT9 A;  3I6U A;  3VA1 A;  1QU5 A;  4WRR A;  3I0N A;  2JKD A;  1LGQ A;  1DMZ A;  4A4Y A;  1DD1 A;  1G88 A;  1GXC A;  3HX1 A;  3ELV A;  1K2M A;  3S40 A;  2KB3 A;  1LGP A;  2G1L A;  3VZB A;  1U7V B;  5JEO A;  1J4L A;  3PO8 A;  4EJQ A;  2FF4 A;  2KKL A;  3HUE A;  1ZOQ A;  2XT9 B;  2KFU A;  4EGX A;  1UJX A;  1YJ5 C;  2KB4 A;  3VA4 A;  1KHX A;  1FHR A;  2AFF A;  3I0M A;  2FEZ A;  1K3N A;  3VZC A;  2BON A;  1WV3 A;  1U7V A;  3UNM A;  2P1R A;  2JQI A;  3UOT A;  1K3Q A;  2A0T A;  2CSW A;  1UHT A;  4WER A;  3I6W A;  5C4V A;  5JEM A;  2JQL A;  1G3G A;  1R21 A;  4A0E A;  4D9V A;  3GQS A;  3DSH A;  1MR1 A;  3ELS A;  1QWT A;  1J2F A;  5JEJ A;  1U7F B;  3UV0 A;  1G6G A;  4R9P A;  2PIE A;  3UN0 A;  3A77 A;  3POA A;  1FHQ A;  1K3J A;  2LC1 A;  4KU0 D;  4JIV D;  4L02 A;  3OUN A;  1YGS A;  2W3O A;  4JON A;  1U7F A;  1J4Q A;  1J4K A;  3MDB A;  1DEV A;  1J4O A;  1YJM A;  2QV7 A;  3VZD A;  2EH0 A;  4QCJ A;  3GMJ A;  1WLN A;  5E50 A;  5JER A;  4JIW D;  3HUF A;  2XXS A;  4V24 A;  2JGR A;  3DIT A;  5JEL A;  5A8I A;  4G2S A;  5DJO A;  3UMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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