3GPQA

Crystal structure of macro domain of chikungunya virus in complex with rna
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
160
structure length
160
Chain Sequence
APSYRVKRMDIAKNDEECVVNAANPRGLPGDGVCKAVYKKWPESFKNSATPVGTAKTVMCGTYPVIHAVGPNFSNYSESEGDRELAAAYREVAKEVTRLGVNSVAIPLLSTGVYSGGKDRLTQSLNHLFTAMDSTDADVVIYCRDKEWEKKISEAIQMRT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein/rna
molecule keywords Non-structural protein 3
publication title The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket
pubmed doi rcsb
source organism Chikungunya virus
total genus 50
structure length 160
sequence length 160
chains with identical sequence B, C, D
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2009-03-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01661 Macro Macro domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3gpqA00
3PEIA 4ZY2A 5HOLA 5CMSA 1YD9A 4ABLA 1TY8A 4GVWA 4UMLA 4D86A 3H8FA 3Q6ZA 1SPVA 5E3BA 4ETJA 3IIFA 2BFQA 2L8RA 3GQEA 1BPNA 3GPGA 3VFQA 4JCAA 3EJFA 3KQZA 2FG1A 1ZR3A 4ETKA 3EJGA 4ZY1A 3H8EA 2LGRA 1NJRA 5DUSA 4JGKA 5HIHA 5CBMA 4R76A 5FSXA 2XD7A 4ZY0A 3EWRA 4J5QA 4GVVA 3H8GA 1HJZA 5FSZA 3V45A 1LAMA 4KSIA 3GQOA 4KYBA 5AILA 3IJ3A 3JZTA 3EWQA 1LAPA 1ZR5A 4R7MA 4JVVA 4GUAA 1LCPA 3SIJA 3KR5A 3EWOA 4K3NA 3ETIA 3JRUA 5FSYA 1TXZA 1GYTA 5FSUA 3T8WA 3Q71A 4ZX8A 2AFCA 4TU0A 1VHUA 2VRIA 4JLLA 5FSVA 2J9AA 2FAVA 4J5SA 3SIGA 3IIDA 3GPQA 3EW5A 2EWBA 1BPMA 3GPOA 3SIHA 4X2TA 4ZX9A 5CB5A 3KR4A 1LANA 2BFRA 3KZWA 4J5RA 4ZI6A 2FXKA 4ABKA 2EEEA 4J4ZA 3EWPA 2X47A 5CB3A 4ZYQA 3EKEA 3SIIA 4IQYA 3V2BA 4K0CA 2DX6A 5D8NA 3KQXA 4ESSA 2ACFA 4R6TA 1BLLE
chains in the Genus database with same CATH superfamily
3PEIA 4ZY2A 5HOLA 5CMSA 1YD9A 4ABLA 1TY8A 4GVWA 4UMLA 4D86A 3H8FA 3Q6ZA 1SPVA 5E3BA 4ETJA 3IIFA 2BFQA 2L8RA 3GQEA 1BPNA 3GPGA 3VFQA 4JCAA 3EJFA 3KQZA 2FG1A 1ZR3A 4ETKA 3EJGA 4ZY1A 3H8EA 2LGRA 1NJRA 5DUSA 4JGKA 5HIHA 5CBMA 4R76A 5FSXA 2XD7A 4ZY0A 3EWRA 2KQVA 4J5QA 4GVVA 3H8GA 1HJZA 5FSZA 3V45A 1LAMA 4KSIA 3GQOA 4KYBA 5AILA 3IJ3A 3JZTA 3EWQA 1LAPA 1ZR5A 4R7MA 4JVVA 4GUAA 1LCPA 3SIJA 3KR5A 3EWOA 4K3NA 3ETIA 3JRUA 5FSYA 1TXZA 1GYTA 5FSUA 3T8WA 2WCTA 3Q71A 4ZX8A 2AFCA 4TU0A 2JZEA 1VHUA 2VRIA 4JLLA 5FSVA 2J9AA 2FAVA 4J5SA 2JZFA 3SIGA 3IIDA 3GPQA 2JZDA 3EW5A 2EWBA 1BPMA 3GPOA 2RNKA 3SIHA 4X2TA 4ZX9A 5CB5A 3KR4A 1LANA 2BFRA 3KZWA 4J5RA 4ZI6A 2FXKA 4ABKA 2EEEA 4J4ZA 3EWPA 2W2GA 2X47A 5CB3A 4ZYQA 3EKEA 3SIIA 4IQYA 3V2BA 4K0CA 2DX6A 5D8NA 3KQXA 4ESSA 2ACFA 4R6TA 1BLLE
chains in the Genus database with same CATH topology
3PEIA 4ZY2A 5HOLA 5CMSA 1YD9A 4ABLA 1TY8A 4GVWA 4UMLA 4D86A 3H8FA 3Q6ZA 1SPVA 5E3BA 4ETJA 3IIFA 2BFQA 2L8RA 3GQEA 1BPNA 3GPGA 3VFQA 4JCAA 3EJFA 3KQZA 2FG1A 1ZR3A 4ETKA 3EJGA 4ZY1A 3H8EA 2LGRA 1NJRA 5DUSA 4JGKA 5HIHA 5CBMA 4R76A 5FSXA 2XD7A 4ZY0A 3EWRA 4J5QA 4GVVA 3H8GA 1HJZA 5FSZA 3V45A 1LAMA 4KSIA 3GQOA 4KYBA 5AILA 3IJ3A 3JZTA 3EWQA 1LAPA 1ZR5A 4R7MA 4JVVA 4GUAA 1LCPA 3SIJA 3KR5A 3EWOA 4K3NA 3ETIA 3JRUA 5FSYA 1TXZA 1GYTA 5FSUA 3T8WA 3Q71A 4ZX8A 2AFCA 4TU0A 1VHUA 2VRIA 4JLLA 5FSVA 2J9AA 2FAVA 4J5SA 3SIGA 3IIDA 3GPQA 3EW5A 2EWBA 1BPMA 3GPOA 3SIHA 4X2TA 4ZX9A 5CB5A 3KR4A 1LANA 2BFRA 3KZWA 4J5RA 4ZI6A 2FXKA 4ABKA 2EEEA 4J4ZA 3EWPA 2X47A 5CB3A 4ZYQA 3EKEA 3SIIA 4IQYA 3V2BA 4K0CA 2DX6A 5D8NA 3KQXA 4ESSA 2ACFA 4R6TA 1BLLE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PEI A;  4ZY2 A;  5HOL A;  5CMS A;  1YD9 A;  4ABL A;  1TY8 A;  4GVW A;  4UML A;  4D86 A;  3H8F A;  3Q6Z A;  1SPV A;  5E3B A;  4ETJ A;  3IIF A;  2BFQ A;  2L8R A;  3GQE A;  1BPN A;  3GPG A;  3VFQ A;  4JCA A;  3EJF A;  3KQZ A;  2FG1 A;  1ZR3 A;  4ETK A;  3EJG A;  4ZY1 A;  3H8E A;  2LGR A;  1NJR A;  5DUS A;  4JGK A;  5HIH A;  5CBM A;  4R76 A;  5FSX A;  2XD7 A;  4ZY0 A;  3EWR A;  4J5Q A;  4GVV A;  3H8G A;  1HJZ A;  5FSZ A;  3V45 A;  1LAM A;  4KSI A;  3GQO A;  4KYB A;  5AIL A;  3IJ3 A;  3JZT A;  3EWQ A;  1LAP A;  1ZR5 A;  4R7M A;  4JVV A;  4GUA A;  1LCP A;  3SIJ A;  3KR5 A;  3EWO A;  4K3N A;  3ETI A;  3JRU A;  5FSY A;  1TXZ A;  1GYT A;  5FSU A;  3T8W A;  3Q71 A;  4ZX8 A;  2AFC A;  4TU0 A;  1VHU A;  2VRI A;  4JLL A;  5FSV A;  2J9A A;  2FAV A;  4J5S A;  3SIG A;  3IID A;  3GPQ A;  3EW5 A;  2EWB A;  1BPM A;  3GPO A;  3SIH A;  4X2T A;  4ZX9 A;  5CB5 A;  3KR4 A;  1LAN A;  2BFR A;  3KZW A;  4J5R A;  4ZI6 A;  2FXK A;  4ABK A;  2EEE A;  4J4Z A;  3EWP A;  2X47 A;  5CB3 A;  4ZYQ A;  3EKE A;  3SII A;  4IQY A;  3V2B A;  4K0C A;  2DX6 A;  5D8N A;  3KQX A;  4ESS A;  2ACF A;  4R6T A;  1BLL E; 
#chains in the Genus database with same CATH topology
 3PEI A;  4ZY2 A;  5HOL A;  5CMS A;  1YD9 A;  4ABL A;  1TY8 A;  4GVW A;  4UML A;  4D86 A;  3H8F A;  3Q6Z A;  1SPV A;  5E3B A;  4ETJ A;  3IIF A;  2BFQ A;  2L8R A;  3GQE A;  1BPN A;  3GPG A;  3VFQ A;  4JCA A;  3EJF A;  3KQZ A;  2FG1 A;  1ZR3 A;  4ETK A;  3EJG A;  4ZY1 A;  3H8E A;  2LGR A;  1NJR A;  5DUS A;  4JGK A;  5HIH A;  5CBM A;  4R76 A;  5FSX A;  2XD7 A;  4ZY0 A;  3EWR A;  2KQV A;  4J5Q A;  4GVV A;  3H8G A;  1HJZ A;  5FSZ A;  3V45 A;  1LAM A;  4KSI A;  3GQO A;  4KYB A;  5AIL A;  3IJ3 A;  3JZT A;  3EWQ A;  1LAP A;  1ZR5 A;  4R7M A;  4JVV A;  4GUA A;  1LCP A;  3SIJ A;  3KR5 A;  3EWO A;  4K3N A;  3ETI A;  3JRU A;  5FSY A;  1TXZ A;  1GYT A;  5FSU A;  3T8W A;  2WCT A;  3Q71 A;  4ZX8 A;  2AFC A;  4TU0 A;  2JZE A;  1VHU A;  2VRI A;  4JLL A;  5FSV A;  2J9A A;  2FAV A;  4J5S A;  2JZF A;  3SIG A;  3IID A;  3GPQ A;  2JZD A;  3EW5 A;  2EWB A;  1BPM A;  3GPO A;  2RNK A;  3SIH A;  4X2T A;  4ZX9 A;  5CB5 A;  3KR4 A;  1LAN A;  2BFR A;  3KZW A;  4J5R A;  4ZI6 A;  2FXK A;  4ABK A;  2EEE A;  4J4Z A;  3EWP A;  2W2G A;  2X47 A;  5CB3 A;  4ZYQ A;  3EKE A;  3SII A;  4IQY A;  3V2B A;  4K0C A;  2DX6 A;  5D8N A;  3KQX A;  4ESS A;  2ACF A;  4R6T A;  1BLL E; 
#chains in the Genus database with same CATH homology
 3PEI A;  4ZY2 A;  5HOL A;  5CMS A;  1YD9 A;  4ABL A;  1TY8 A;  4GVW A;  4UML A;  4D86 A;  3H8F A;  3Q6Z A;  1SPV A;  5E3B A;  4ETJ A;  3IIF A;  2BFQ A;  2L8R A;  3GQE A;  1BPN A;  3GPG A;  3VFQ A;  4JCA A;  3EJF A;  3KQZ A;  2FG1 A;  1ZR3 A;  4ETK A;  3EJG A;  4ZY1 A;  3H8E A;  2LGR A;  1NJR A;  5DUS A;  4JGK A;  5HIH A;  5CBM A;  4R76 A;  5FSX A;  2XD7 A;  4ZY0 A;  3EWR A;  4J5Q A;  4GVV A;  3H8G A;  1HJZ A;  5FSZ A;  3V45 A;  1LAM A;  4KSI A;  3GQO A;  4KYB A;  5AIL A;  3IJ3 A;  3JZT A;  3EWQ A;  1LAP A;  1ZR5 A;  4R7M A;  4JVV A;  4GUA A;  1LCP A;  3SIJ A;  3KR5 A;  3EWO A;  4K3N A;  3ETI A;  3JRU A;  5FSY A;  1TXZ A;  1GYT A;  5FSU A;  3T8W A;  3Q71 A;  4ZX8 A;  2AFC A;  4TU0 A;  1VHU A;  2VRI A;  4JLL A;  5FSV A;  2J9A A;  2FAV A;  4J5S A;  3SIG A;  3IID A;  3GPQ A;  3EW5 A;  2EWB A;  1BPM A;  3GPO A;  3SIH A;  4X2T A;  4ZX9 A;  5CB5 A;  3KR4 A;  1LAN A;  2BFR A;  3KZW A;  4J5R A;  4ZI6 A;  2FXK A;  4ABK A;  2EEE A;  4J4Z A;  3EWP A;  2X47 A;  5CB3 A;  4ZYQ A;  3EKE A;  3SII A;  4IQY A;  3V2B A;  4K0C A;  2DX6 A;  5D8N A;  3KQX A;  4ESS A;  2ACF A;  4R6T A;  1BLL E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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