3HAIA

Crystal structure of human pacsin1 f-bar domain (p21 lattice)
Total Genus 112
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
sequence length
294
structure length
294
Chain Sequence
TTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREMNSKTEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWNPD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords human PACSIN1 F-BAR
publication title Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
pubmed doi rcsb
source organism Homo sapiens
total genus 112
structure length 294
sequence length 294
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3haiA01
4NSWA 2C08A 3ABHA 1WDZA 2X3WA 2EFKA 3Q84A 3OK8A 2D1LA 3M3WA 4H8SA 3SYVA 1X04A 1I4LA 2RAJA 4NQIA 1X03A 3SOGA 2FICA 4AVMA 2D4CA 2Z0NA 4DCNC 1I4TA 2RAKA 2RAIA 1I4DA 3ACOA 2YKTA 4FZSA 1Y2OA 3LLLA 5C5BA 3G9GA 3DYTA 3PLTA 3HAHA 3Q0KA 3QE6A 4ATMA 4WPCA 1URUA 4DYLA 2Z0VA 4I1QA 2EFLA 4AKVA 3QNIA 3HAIA 3I2WA 2V0OA 1ZWWA 2X3XA 3HAJA 1I49A 2Q13A 2Z0OA 3QWEA 4WPEA 4BNEA 2Q12A 2X3VA 2ELBA 3CAZA 5C5BB
chains in the Genus database with same CATH superfamily
4AZHA 2D1LA 3DX3A 3EJTA 1OA1A 2PY6A 1URUA 2YIBA 2V0OA 1U00A 2N3KA 2F7PA 5E84A 2YIAA 2OO2A 4R5LA 3L3OM 4H8SA 3I01A 3D4ZA 2ND0A 4EZYA 3T46A 4H6HA 4EZOA 2X5CA 3I39X 3T48A 2F1BA 3D51A 4UDYX 3DPQA 3DX0A 3A98A 2YLLA 4HR1A 3D2FA 4AZCA 4D8JA 1ZYLA 2EX3B 3Q84A 4IWPA 3F7WA 3L3PA 2WYHA 2RAIA 3LLLA 3UITA 2GF4A 4WPCA 1SU7A 1PS3A 3BVWA 3I2WA 1ZWWA 4NPHA 3BLBA 4UDXX 4JL9A 5TKYA 2YL6A 1WDZA 2EFKA 4E81A 4EZZA 1GN9A 4JWDA 4IWQA 2D4CA 4JNEA 3DX4A 1TQUA 4EZSA 2QXLA 3LMFA 3C7NA 1I49A 3QWEA 4BNEA 3CAZA 1QWUA 2YL9A 3ZEDA 5FIGA 4IM2A 1R34A 4AZ6A 1E2UA 3D50A 4DCNC 2RAKA 3KAWA 3HAHA 3Q0KA 3QE6A 3DPPA 4R5IA 2JNKA 3OWGA 1SU6A 3DDGA 3OHXM 2RT6A 4JN4A 1E9VA 3O3MB 3T4AG 1I4TA 3ACOA 4AZIA 3G9GA 4JWCA 2F1AA 4AKVA 1JQKA 2O0I1 3EJUA 3CVRA 4AZ5A 2Q13A 2ND1A 2ELBA 4KIKB 3CV5A 5C5BB 3OK8A 3ERCC 4F00A 1QX1A 4AZGA 3RV1A 1GNTA 4EZWA 2YL8A 2OZNB 4IW0A 1SU8A 3DDFA 3BUQA 4EZXA 1I4LA 4H6IA 4ATMA 3EJSA 2ALWA 1HWWA 3DX2A 1TQSA 1MJGA 3T47A 2JNSA 4B9QA 3ER9B 3LVTA 1X03A 4JLCA 4F01A 2F7RA 1Y2OA 4R5JA 1DKXA 4JWIA 2YLAA 2Z0VA 2PMRA 3EJRA 3DX1A 3CZNA 2C08A 2F7QA 1LQ7A 3SYVA 1W9MA 3SOGA 4AVMA 2OBLA 3CZSA 5KBPA 3HAJA 2OW6A 3QNJA 1TQTA 3D4YA 4E3CA 3BUPA 3ABHA 2X3WA 3BUBA 4FZPA 3ER8C 4R5KA 1X04A 4EZPA 4NQIA 2ZXQA 2YIVX 2YL5A 3DYTA 1HXKA 1E1DA 3T49A 2OBMA 1DKYA 3HAIA 2EWFA 3O3NB 2Z0OA 3KDRA 2Q12A 3BVUA 3B51X 4NSWA 1R5EA 3DPOA 1TQVA 3RPMA 1R33A 4HR1B 4R5GA 4AZCB 2FYVA 3VKHA 1SUFA 3B52X 2WYIA 2LM0A 1DKZA 3EJQA 3FD9A 1O7DB 3BUDA 4AZ7A 3BVTA 2Z0NA 4FZSA 4KIKA 5C5BA 3CKDA 2F18A 1O7DC 2EFLA 1QWNA 4EZRA 2X3XA 1GNLA 4M0MA 4EZUA 4JWEA 2QKWA 2LXYA 4HY9A 3D52A 2KHOA 2RAJA 4FM3A 5FLEX 4PO2A 2FICA 3I04A 1TQWA 3RV0A 1OAOA 4EZVA 4IWOA 4WPEA 3VEAA 2WINM 1UPXA 3KAVA 2Z8YA 4JNFA 3GI7A 4EZNA 1I4DA 2MI7A 4G6QA 4IM3A 2QFFA 2YI9A 4I1QA 3QNIA 2F7OA 4EZQA 4IM0A 2GA9D 3QA8A 4EZTA 3B53X 4AZBA 2OW7A 1HTYA 3D2EA 3M3WA 3BUIA 3BVVA 4HYBA 1YWMA 2YKTA 2GAFD 1OA0A 4FZOA 3PLTA 3BVXA 4DYLA 2NCZA 2YI8A 3O3OB 2X3VA 3VEBA 3EJPA
chains in the Genus database with same CATH topology
4NSWA 2C08A 3ABHA 1WDZA 2X3WA 2EFKA 3Q84A 3OK8A 2D1LA 3M3WA 4H8SA 3SYVA 1X04A 1I4LA 2RAJA 4NQIA 1X03A 3SOGA 2FICA 4AVMA 2D4CA 2Z0NA 4DCNC 1I4TA 2RAKA 2RAIA 1I4DA 3ACOA 2YKTA 4FZSA 1Y2OA 3LLLA 5C5BA 3G9GA 3DYTA 3PLTA 3HAHA 3Q0KA 3QE6A 4ATMA 4WPCA 1URUA 4DYLA 2Z0VA 4I1QA 2EFLA 4AKVA 3QNIA 3HAIA 3I2WA 2V0OA 1ZWWA 2X3XA 3HAJA 1I49A 2Q13A 2Z0OA 3QWEA 4WPEA 4BNEA 2Q12A 2X3VA 2ELBA 3CAZA 5C5BB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NSW A;  2C08 A;  3ABH A;  1WDZ A;  2X3W A;  2EFK A;  3Q84 A;  3OK8 A;  2D1L A;  3M3W A;  4H8S A;  3SYV A;  1X04 A;  1I4L A;  2RAJ A;  4NQI A;  1X03 A;  3SOG A;  2FIC A;  4AVM A;  2D4C A;  2Z0N A;  4DCN C;  1I4T A;  2RAK A;  2RAI A;  1I4D A;  3ACO A;  2YKT A;  4FZS A;  1Y2O A;  3LLL A;  5C5B A;  3G9G A;  3DYT A;  3PLT A;  3HAH A;  3Q0K A;  3QE6 A;  4ATM A;  4WPC A;  1URU A;  4DYL A;  2Z0V A;  4I1Q A;  2EFL A;  4AKV A;  3QNI A;  3HAI A;  3I2W A;  2V0O A;  1ZWW A;  2X3X A;  3HAJ A;  1I49 A;  2Q13 A;  2Z0O A;  3QWE A;  4WPE A;  4BNE A;  2Q12 A;  2X3V A;  2ELB A;  3CAZ A;  5C5B B; 
#chains in the Genus database with same CATH topology
 4AZH A;  2D1L A;  3DX3 A;  3EJT A;  1OA1 A;  2PY6 A;  1URU A;  2YIB A;  2V0O A;  1U00 A;  2N3K A;  2F7P A;  5E84 A;  2YIA A;  2OO2 A;  4R5L A;  3L3O M;  4H8S A;  3I01 A;  3D4Z A;  2ND0 A;  4EZY A;  3T46 A;  4H6H A;  4EZO A;  2X5C A;  3I39 X;  3T48 A;  2F1B A;  3D51 A;  4UDY X;  3DPQ A;  3DX0 A;  3A98 A;  2YLL A;  4HR1 A;  3D2F A;  4AZC A;  4D8J A;  1ZYL A;  2EX3 B;  3Q84 A;  4IWP A;  3F7W A;  3L3P A;  2WYH A;  2RAI A;  3LLL A;  3UIT A;  2GF4 A;  4WPC A;  1SU7 A;  1PS3 A;  3BVW A;  3I2W A;  1ZWW A;  4NPH A;  3BLB A;  4UDX X;  4JL9 A;  5TKY A;  2YL6 A;  1WDZ A;  2EFK A;  4E81 A;  4EZZ A;  1GN9 A;  4JWD A;  4IWQ A;  2D4C A;  4JNE A;  3DX4 A;  1TQU A;  4EZS A;  2QXL A;  3LMF A;  3C7N A;  1I49 A;  3QWE A;  4BNE A;  3CAZ A;  1QWU A;  2YL9 A;  3ZED A;  5FIG A;  4IM2 A;  1R34 A;  4AZ6 A;  1E2U A;  3D50 A;  4DCN C;  2RAK A;  3KAW A;  3HAH A;  3Q0K A;  3QE6 A;  3DPP A;  4R5I A;  2JNK A;  3OWG A;  1SU6 A;  3DDG A;  3OHX M;  2RT6 A;  4JN4 A;  1E9V A;  3O3M B;  3T4A G;  1I4T A;  3ACO A;  4AZI A;  3G9G A;  4JWC A;  2F1A A;  4AKV A;  1JQK A;  2O0I 1;  3EJU A;  3CVR A;  4AZ5 A;  2Q13 A;  2ND1 A;  2ELB A;  4KIK B;  3CV5 A;  5C5B B;  3OK8 A;  3ERC C;  4F00 A;  1QX1 A;  4AZG A;  3RV1 A;  1GNT A;  4EZW A;  2YL8 A;  2OZN B;  4IW0 A;  1SU8 A;  3DDF A;  3BUQ A;  4EZX A;  1I4L A;  4H6I A;  4ATM A;  3EJS A;  2ALW A;  1HWW A;  3DX2 A;  1TQS A;  1MJG A;  3T47 A;  2JNS A;  4B9Q A;  3ER9 B;  3LVT A;  1X03 A;  4JLC A;  4F01 A;  2F7R A;  1Y2O A;  4R5J A;  1DKX A;  4JWI A;  2YLA A;  2Z0V A;  2PMR A;  3EJR A;  3DX1 A;  3CZN A;  2C08 A;  2F7Q A;  1LQ7 A;  3SYV A;  1W9M A;  3SOG A;  4AVM A;  2OBL A;  3CZS A;  5KBP A;  3HAJ A;  2OW6 A;  3QNJ A;  1TQT A;  3D4Y A;  4E3C A;  3BUP A;  3ABH A;  2X3W A;  3BUB A;  4FZP A;  3ER8 C;  4R5K A;  1X04 A;  4EZP A;  4NQI A;  2ZXQ A;  2YIV X;  2YL5 A;  3DYT A;  1HXK A;  1E1D A;  3T49 A;  2OBM A;  1DKY A;  3HAI A;  2EWF A;  3O3N B;  2Z0O A;  3KDR A;  2Q12 A;  3BVU A;  3B51 X;  4NSW A;  1R5E A;  3DPO A;  1TQV A;  3RPM A;  1R33 A;  4HR1 B;  4R5G A;  4AZC B;  2FYV A;  3VKH A;  1SUF A;  3B52 X;  2WYI A;  2LM0 A;  1DKZ A;  3EJQ A;  3FD9 A;  1O7D B;  3BUD A;  4AZ7 A;  3BVT A;  2Z0N A;  4FZS A;  4KIK A;  5C5B A;  3CKD A;  2F18 A;  1O7D C;  2EFL A;  1QWN A;  4EZR A;  2X3X A;  1GNL A;  4M0M A;  4EZU A;  4JWE A;  2QKW A;  2LXY A;  4HY9 A;  3D52 A;  2KHO A;  2RAJ A;  4FM3 A;  5FLE X;  4PO2 A;  2FIC A;  3I04 A;  1TQW A;  3RV0 A;  1OAO A;  4EZV A;  4IWO A;  4WPE A;  3VEA A;  2WIN M;  1UPX A;  3KAV A;  2Z8Y A;  4JNF A;  3GI7 A;  4EZN A;  1I4D A;  2MI7 A;  4G6Q A;  4IM3 A;  2QFF A;  2YI9 A;  4I1Q A;  3QNI A;  2F7O A;  4EZQ A;  4IM0 A;  2GA9 D;  3QA8 A;  4EZT A;  3B53 X;  4AZB A;  2OW7 A;  1HTY A;  3D2E A;  3M3W A;  3BUI A;  3BVV A;  4HYB A;  1YWM A;  2YKT A;  2GAF D;  1OA0 A;  4FZO A;  3PLT A;  3BVX A;  4DYL A;  2NCZ A;  2YI8 A;  3O3O B;  2X3V A;  3VEB A;  3EJP A; 
#chains in the Genus database with same CATH homology
 4NSW A;  2C08 A;  3ABH A;  1WDZ A;  2X3W A;  2EFK A;  3Q84 A;  3OK8 A;  2D1L A;  3M3W A;  4H8S A;  3SYV A;  1X04 A;  1I4L A;  2RAJ A;  4NQI A;  1X03 A;  3SOG A;  2FIC A;  4AVM A;  2D4C A;  2Z0N A;  4DCN C;  1I4T A;  2RAK A;  2RAI A;  1I4D A;  3ACO A;  2YKT A;  4FZS A;  1Y2O A;  3LLL A;  5C5B A;  3G9G A;  3DYT A;  3PLT A;  3HAH A;  3Q0K A;  3QE6 A;  4ATM A;  4WPC A;  1URU A;  4DYL A;  2Z0V A;  4I1Q A;  2EFL A;  4AKV A;  3QNI A;  3HAI A;  3I2W A;  2V0O A;  1ZWW A;  2X3X A;  3HAJ A;  1I49 A;  2Q13 A;  2Z0O A;  3QWE A;  4WPE A;  4BNE A;  2Q12 A;  2X3V A;  2ELB A;  3CAZ A;  5C5B B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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