3I9V7

Crystal structure of the hydrophilic domain of respiratory complex i from thermus thermophilus, oxidized, 2 mol/asu
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
127
structure length
127
Chain Sequence
ASSERELYEAWVELLSWMREYAQAKGVRFEKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHIHLHAHYEPGKGLVTGKIPLTKERFFALADRAREALAFA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords NADH-quinone oxidoreductase subunit 1
publication title Structural basis for the mechanism of respiratory complex I
pubmed doi rcsb
total genus 34
structure length 127
sequence length 127
chains with identical sequence H
ec nomenclature ec 1.6.99.5: Transferred entry: 1.6.5.11.
pdb deposition date 2009-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
7 PF11497 NADH_Oxid_Nqo15 NADH-quinone oxidoreductase chain 15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.920.80 Alpha Beta 2-Layer Sandwich Metal Transport, Frataxin; Chain A Metal Transport, Frataxin; Chain A 3i9v700
3IAM7 3IAS7 3I9V7 2FUG7 4HEA7
chains in the Genus database with same CATH superfamily
3IAM7 3T3KA 2P1XA 3T3XA 3I9V7 3OERA 4LK8A 4JPDA 1D2MA 1EKGA 3S4MA 3S5EA 3S5FA 1SOYA 4P78C 4LP1A 3A5PA 1LY7A 2EFFA 3T3TA 3SSCA 2GA5A 1WHZA 3SSDA 3OEQA 4EC2A 3IMOA 2FQLA 4C26A 3T3JA 3GD9A 1EW4A 3IAS7 3T3LA 1V5RA 3GD0A 3SSEA 2FUG7 3S5DA 4HS5A 4HEA7
chains in the Genus database with same CATH topology
3IAM7 3IAS7 3A5PA 3IMOA 3I9V7 3GD0A 3SSCA 3SSEA 2FUG7 1D2MA 3GD9A 3SSDA 4HEA7
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IAM 7;  3IAS 7;  3I9V 7;  2FUG 7;  4HEA 7; 
#chains in the Genus database with same CATH topology
 3IAM 7;  3T3K A;  2P1X A;  3T3X A;  3I9V 7;  3OER A;  4LK8 A;  4JPD A;  1D2M A;  1EKG A;  3S4M A;  3S5E A;  3S5F A;  1SOY A;  4P78 C;  4LP1 A;  3A5P A;  1LY7 A;  2EFF A;  3T3T A;  3SSC A;  2GA5 A;  1WHZ A;  3SSD A;  3OEQ A;  4EC2 A;  3IMO A;  2FQL A;  4C26 A;  3T3J A;  3GD9 A;  1EW4 A;  3IAS 7;  3T3L A;  1V5R A;  3GD0 A;  3SSE A;  2FUG 7;  3S5D A;  4HS5 A;  4HEA 7; 
#chains in the Genus database with same CATH homology
 3IAM 7;  3IAS 7;  3A5P A;  3IMO A;  3I9V 7;  3GD0 A;  3SSC A;  3SSE A;  2FUG 7;  1D2M A;  3GD9 A;  3SSD A;  4HEA 7; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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