3IDDA

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Total Genus 112
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
112
Knots found
sequence length
395
structure length
364
Chain Sequence
KSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISPSDTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPSNYRGKIEKAVDLTSSHDFVLVNIKNYPLKRDVIEDIDRAMEPLKSIGDHAVICVTGDHSDPVPIVFYTDGVMNDGVHLFDELSSASGSLRITSYNVMDILMQLAG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Cofactor-Independent Phosphoglycerate Mutase from Thermoplasma acidophilum DSM 1728
rcsb
source organism Thermoplasma acidophilum
total genus 112
structure length 364
sequence length 395
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-07-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3iddA01
1EI6A 3BDHA 3Q3QA 2G9YA 1EW2A 2W8SA 5L0BA 4MY4A 4QAXA 3NKMA 3TWZA 2GSOA 1ELZA 4B56A 4ZGAA 1KHNA 5GRRA 5L0EA 3M7VA 1HQAA 3NKOA 4ZG6A 2W5TA 3WAVA 1P49A 2W5WA 1EJJA 1ALIA 4LRDA 2IFYA 3IDDA 3LXQA 1ELXA 3MK0A 3WBHA 3M8WA 4UORA 3NKRA 2W5QA 2RH6A 4KM4A 5EGEA 3BDFA 1ANIA 1ALKA 3WAWA 1ANJA 1SHQA 1N2KA 1ED8A 4LR2A 5KXAA 3B5QA 1EQJA 3M8YA 3UN2A 1KH9A 2W5RA 2D1GA 3BDGA 3T01A 2W5XA 2GLQA 3A52A 4UOOA 1N2LA 3T02A 1E3CP 3WAXA 4UPIA 4KAVA 5L0KA 4UOPA 3UN3A 5HRTA 1E1ZP 3KD8A 4YR1A 3DYCA 4FDJA 4LQYA 1KHLA 1URBA 4GTXA 5C66A 3OT9A 3WAYA 1AJBA 1AJDA 1ELYA 3BDGB 4KJGA 2ZKTA 4FDIA 5LRMA 1K7HA 3MK1A 3CMRA 3SZYA 1SHNA 1E2SP 1ED9A 4GTZA 1AJCA 4CXUA 1KH7A 4KAYA 4GTWA 4LR8A 5K4PA 3TG0A 1EW8A 3IGZB 4UPKA 3TX0A 5TJ3A 1AUKA 4ZG9A 3IGYB 1KHKA 4GTYA 1ZEDA 2GA3A 3UO0A 4LRBA 4KJDA 1AJAA 4UPHA 3NKNA 4LRFA 3SZZA 3DPCA 4NWJA 3UNYA 5DLTA 3ED4A 4CYSA 1B8JA 5IJSA 3NKQA 1HDHA 3MK2A 3UN5A 2GSUA 2GSNA 5GOVA 1Y7AA 4LRCA 1Y6VA 1HJKA 4N7TA 1EW9A 4CXSA 2VQRA 1ALJA 5INHA 1O99A 2X98A 2ANHA 1FSUA 1ALHA 1KH5A 3NVLA 2W5VA 1ZEFA 2XRGA 3NKPA 4CXKA 5DLWA 2XR9A 5LQQA 1KH4A 5LRNA 3T00A 5DLVA 1ZEBA 1O98A 2IUCB 2QZUA 1E33P 4ZG7A 4LRAA 4CYRA 4MHXA 1URAA 1KHJA 4NWXA 4MIVA 5AJ9A 5EGHA 4TN0A 3M8ZA 2W8DA 5LIAA 3E2DA 4LREA 2IUCA 4LR9A 4UPLA 4LR7A 5IJQA 2W5SA
chains in the Genus database with same CATH superfamily
1EI6A 3BDHA 3Q3QA 2G9YA 1EW2A 2W8SA 5L0BA 4MY4A 4QAXA 3NKMA 3TWZA 2GSOA 1ELZA 4B56A 4ZGAA 1KHNA 5GRRA 5L0EA 3M7VA 1HQAA 3NKOA 4ZG6A 2W5TA 3WAVA 1P49A 2W5WA 1EJJA 1ALIA 4LRDA 2IFYA 3IDDA 3LXQA 1ELXA 3MK0A 3WBHA 3M8WA 4UORA 3NKRA 2W5QA 2RH6A 4KM4A 5EGEA 3BDFA 1ANIA 1ALKA 3WAWA 1ANJA 1SHQA 1N2KA 1ED8A 4LR2A 5KXAA 3B5QA 1EQJA 3M8YA 3UN2A 1KH9A 2W5RA 2D1GA 3BDGA 3T01A 2W5XA 2GLQA 3A52A 4UOOA 1N2LA 3T02A 1E3CP 3WAXA 4UPIA 4KAVA 5L0KA 4UOPA 3UN3A 5HRTA 1E1ZP 3KD8A 4YR1A 3DYCA 4FDJA 4LQYA 1KHLA 1URBA 4GTXA 5C66A 3OT9A 3WAYA 1AJBA 1AJDA 1ELYA 3BDGB 4KJGA 2ZKTA 4FDIA 5LRMA 1K7HA 3MK1A 3CMRA 3SZYA 1SHNA 1E2SP 1ED9A 4GTZA 1AJCA 4CXUA 1KH7A 4KAYA 4GTWA 4LR8A 5K4PA 3TG0A 1EW8A 3IGZB 4UPKA 3TX0A 5TJ3A 1AUKA 4ZG9A 3IGYB 1KHKA 4GTYA 1ZEDA 2GA3A 3UO0A 4LRBA 4KJDA 1AJAA 4UPHA 3NKNA 4LRFA 3SZZA 3DPCA 4NWJA 3UNYA 5DLTA 3ED4A 4CYSA 1B8JA 5IJSA 3NKQA 1HDHA 3MK2A 3UN5A 2GSUA 2GSNA 5GOVA 1Y7AA 4LRCA 1Y6VA 1HJKA 4N7TA 1EW9A 4CXSA 2VQRA 1ALJA 5INHA 1O99A 2X98A 2ANHA 1FSUA 1ALHA 1KH5A 3NVLA 2W5VA 1ZEFA 2XRGA 3NKPA 4CXKA 5DLWA 2XR9A 5LQQA 1KH4A 5LRNA 3T00A 5DLVA 1ZEBA 1O98A 2IUCB 2QZUA 1E33P 4ZG7A 4LRAA 4CYRA 4MHXA 1URAA 1KHJA 4NWXA 4MIVA 5AJ9A 5EGHA 4TN0A 3M8ZA 2W8DA 5LIAA 3E2DA 4LREA 2IUCA 4LR9A 4UPLA 4LR7A 5IJQA 2W5SA
chains in the Genus database with same CATH topology
1EI6A 3BDHA 3Q3QA 2G9YA 1EW2A 2W8SA 5L0BA 4MY4A 4QAXA 3NKMA 3TWZA 2GSOA 1ELZA 4B56A 4ZGAA 1KHNA 5GRRA 5L0EA 3M7VA 1HQAA 3NKOA 4ZG6A 2W5TA 3WAVA 1P49A 2W5WA 1EJJA 1ALIA 4LRDA 2IFYA 3IDDA 3LXQA 1ELXA 3MK0A 3WBHA 3M8WA 4UORA 3NKRA 2W5QA 2RH6A 4KM4A 5EGEA 3BDFA 1ANIA 1ALKA 3WAWA 1ANJA 1SHQA 1N2KA 1ED8A 4LR2A 5KXAA 3B5QA 1EQJA 3M8YA 3UN2A 1KH9A 2W5RA 2D1GA 3BDGA 3T01A 2W5XA 2GLQA 3A52A 4UOOA 1N2LA 3T02A 1E3CP 3WAXA 4UPIA 4KAVA 5L0KA 4UOPA 3UN3A 5HRTA 1E1ZP 3KD8A 4YR1A 3DYCA 4FDJA 4LQYA 1KHLA 1URBA 4GTXA 5C66A 3OT9A 3WAYA 1AJBA 1AJDA 1ELYA 3BDGB 4KJGA 2ZKTA 4FDIA 5LRMA 1K7HA 3MK1A 3CMRA 3SZYA 1SHNA 1E2SP 1ED9A 4GTZA 1AJCA 4CXUA 1KH7A 4KAYA 4GTWA 4LR8A 5K4PA 3TG0A 1EW8A 3IGZB 4UPKA 3TX0A 5TJ3A 1AUKA 4ZG9A 3IGYB 1KHKA 4GTYA 1ZEDA 2GA3A 3UO0A 4LRBA 4KJDA 1AJAA 4UPHA 3NKNA 4LRFA 3SZZA 3DPCA 4NWJA 3UNYA 5DLTA 3ED4A 4CYSA 1B8JA 5IJSA 3NKQA 1HDHA 3MK2A 3UN5A 2GSUA 2GSNA 5GOVA 1Y7AA 4LRCA 1Y6VA 1HJKA 4N7TA 1EW9A 4CXSA 2VQRA 1ALJA 5INHA 1O99A 2X98A 2ANHA 1FSUA 1ALHA 1KH5A 3NVLA 2W5VA 1ZEFA 2XRGA 3NKPA 4CXKA 5DLWA 2XR9A 5LQQA 1KH4A 5LRNA 3T00A 5DLVA 1ZEBA 1O98A 2IUCB 2QZUA 1E33P 4ZG7A 4LRAA 4CYRA 4MHXA 1URAA 1KHJA 4NWXA 4MIVA 5AJ9A 5EGHA 4TN0A 3M8ZA 2W8DA 5LIAA 3E2DA 4LREA 2IUCA 4LR9A 4UPLA 4LR7A 5IJQA 2W5SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EI6 A;  3BDH A;  3Q3Q A;  2G9Y A;  1EW2 A;  2W8S A;  5L0B A;  4MY4 A;  4QAX A;  3NKM A;  3TWZ A;  2GSO A;  1ELZ A;  4B56 A;  4ZGA A;  1KHN A;  5GRR A;  5L0E A;  3M7V A;  1HQA A;  3NKO A;  4ZG6 A;  2W5T A;  3WAV A;  1P49 A;  2W5W A;  1EJJ A;  1ALI A;  4LRD A;  2IFY A;  3IDD A;  3LXQ A;  1ELX A;  3MK0 A;  3WBH A;  3M8W A;  4UOR A;  3NKR A;  2W5Q A;  2RH6 A;  4KM4 A;  5EGE A;  3BDF A;  1ANI A;  1ALK A;  3WAW A;  1ANJ A;  1SHQ A;  1N2K A;  1ED8 A;  4LR2 A;  5KXA A;  3B5Q A;  1EQJ A;  3M8Y A;  3UN2 A;  1KH9 A;  2W5R A;  2D1G A;  3BDG A;  3T01 A;  2W5X A;  2GLQ A;  3A52 A;  4UOO A;  1N2L A;  3T02 A;  1E3C P;  3WAX A;  4UPI A;  4KAV A;  5L0K A;  4UOP A;  3UN3 A;  5HRT A;  1E1Z P;  3KD8 A;  4YR1 A;  3DYC A;  4FDJ A;  4LQY A;  1KHL A;  1URB A;  4GTX A;  5C66 A;  3OT9 A;  3WAY A;  1AJB A;  1AJD A;  1ELY A;  3BDG B;  4KJG A;  2ZKT A;  4FDI A;  5LRM A;  1K7H A;  3MK1 A;  3CMR A;  3SZY A;  1SHN A;  1E2S P;  1ED9 A;  4GTZ A;  1AJC A;  4CXU A;  1KH7 A;  4KAY A;  4GTW A;  4LR8 A;  5K4P A;  3TG0 A;  1EW8 A;  3IGZ B;  4UPK A;  3TX0 A;  5TJ3 A;  1AUK A;  4ZG9 A;  3IGY B;  1KHK A;  4GTY A;  1ZED A;  2GA3 A;  3UO0 A;  4LRB A;  4KJD A;  1AJA A;  4UPH A;  3NKN A;  4LRF A;  3SZZ A;  3DPC A;  4NWJ A;  3UNY A;  5DLT A;  3ED4 A;  4CYS A;  1B8J A;  5IJS A;  3NKQ A;  1HDH A;  3MK2 A;  3UN5 A;  2GSU A;  2GSN A;  5GOV A;  1Y7A A;  4LRC A;  1Y6V A;  1HJK A;  4N7T A;  1EW9 A;  4CXS A;  2VQR A;  1ALJ A;  5INH A;  1O99 A;  2X98 A;  2ANH A;  1FSU A;  1ALH A;  1KH5 A;  3NVL A;  2W5V A;  1ZEF A;  2XRG A;  3NKP A;  4CXK A;  5DLW A;  2XR9 A;  5LQQ A;  1KH4 A;  5LRN A;  3T00 A;  5DLV A;  1ZEB A;  1O98 A;  2IUC B;  2QZU A;  1E33 P;  4ZG7 A;  4LRA A;  4CYR A;  4MHX A;  1URA A;  1KHJ A;  4NWX A;  4MIV A;  5AJ9 A;  5EGH A;  4TN0 A;  3M8Z A;  2W8D A;  5LIA A;  3E2D A;  4LRE A;  2IUC A;  4LR9 A;  4UPL A;  4LR7 A;  5IJQ A;  2W5S A; 
#chains in the Genus database with same CATH topology
 1EI6 A;  3BDH A;  3Q3Q A;  2G9Y A;  1EW2 A;  2W8S A;  5L0B A;  4MY4 A;  4QAX A;  3NKM A;  3TWZ A;  2GSO A;  1ELZ A;  4B56 A;  4ZGA A;  1KHN A;  5GRR A;  5L0E A;  3M7V A;  1HQA A;  3NKO A;  4ZG6 A;  2W5T A;  3WAV A;  1P49 A;  2W5W A;  1EJJ A;  1ALI A;  4LRD A;  2IFY A;  3IDD A;  3LXQ A;  1ELX A;  3MK0 A;  3WBH A;  3M8W A;  4UOR A;  3NKR A;  2W5Q A;  2RH6 A;  4KM4 A;  5EGE A;  3BDF A;  1ANI A;  1ALK A;  3WAW A;  1ANJ A;  1SHQ A;  1N2K A;  1ED8 A;  4LR2 A;  5KXA A;  3B5Q A;  1EQJ A;  3M8Y A;  3UN2 A;  1KH9 A;  2W5R A;  2D1G A;  3BDG A;  3T01 A;  2W5X A;  2GLQ A;  3A52 A;  4UOO A;  1N2L A;  3T02 A;  1E3C P;  3WAX A;  4UPI A;  4KAV A;  5L0K A;  4UOP A;  3UN3 A;  5HRT A;  1E1Z P;  3KD8 A;  4YR1 A;  3DYC A;  4FDJ A;  4LQY A;  1KHL A;  1URB A;  4GTX A;  5C66 A;  3OT9 A;  3WAY A;  1AJB A;  1AJD A;  1ELY A;  3BDG B;  4KJG A;  2ZKT A;  4FDI A;  5LRM A;  1K7H A;  3MK1 A;  3CMR A;  3SZY A;  1SHN A;  1E2S P;  1ED9 A;  4GTZ A;  1AJC A;  4CXU A;  1KH7 A;  4KAY A;  4GTW A;  4LR8 A;  5K4P A;  3TG0 A;  1EW8 A;  3IGZ B;  4UPK A;  3TX0 A;  5TJ3 A;  1AUK A;  4ZG9 A;  3IGY B;  1KHK A;  4GTY A;  1ZED A;  2GA3 A;  3UO0 A;  4LRB A;  4KJD A;  1AJA A;  4UPH A;  3NKN A;  4LRF A;  3SZZ A;  3DPC A;  4NWJ A;  3UNY A;  5DLT A;  3ED4 A;  4CYS A;  1B8J A;  5IJS A;  3NKQ A;  1HDH A;  3MK2 A;  3UN5 A;  2GSU A;  2GSN A;  5GOV A;  1Y7A A;  4LRC A;  1Y6V A;  1HJK A;  4N7T A;  1EW9 A;  4CXS A;  2VQR A;  1ALJ A;  5INH A;  1O99 A;  2X98 A;  2ANH A;  1FSU A;  1ALH A;  1KH5 A;  3NVL A;  2W5V A;  1ZEF A;  2XRG A;  3NKP A;  4CXK A;  5DLW A;  2XR9 A;  5LQQ A;  1KH4 A;  5LRN A;  3T00 A;  5DLV A;  1ZEB A;  1O98 A;  2IUC B;  2QZU A;  1E33 P;  4ZG7 A;  4LRA A;  4CYR A;  4MHX A;  1URA A;  1KHJ A;  4NWX A;  4MIV A;  5AJ9 A;  5EGH A;  4TN0 A;  3M8Z A;  2W8D A;  5LIA A;  3E2D A;  4LRE A;  2IUC A;  4LR9 A;  4UPL A;  4LR7 A;  5IJQ A;  2W5S A; 
#chains in the Genus database with same CATH homology
 1EI6 A;  3BDH A;  3Q3Q A;  2G9Y A;  1EW2 A;  2W8S A;  5L0B A;  4MY4 A;  4QAX A;  3NKM A;  3TWZ A;  2GSO A;  1ELZ A;  4B56 A;  4ZGA A;  1KHN A;  5GRR A;  5L0E A;  3M7V A;  1HQA A;  3NKO A;  4ZG6 A;  2W5T A;  3WAV A;  1P49 A;  2W5W A;  1EJJ A;  1ALI A;  4LRD A;  2IFY A;  3IDD A;  3LXQ A;  1ELX A;  3MK0 A;  3WBH A;  3M8W A;  4UOR A;  3NKR A;  2W5Q A;  2RH6 A;  4KM4 A;  5EGE A;  3BDF A;  1ANI A;  1ALK A;  3WAW A;  1ANJ A;  1SHQ A;  1N2K A;  1ED8 A;  4LR2 A;  5KXA A;  3B5Q A;  1EQJ A;  3M8Y A;  3UN2 A;  1KH9 A;  2W5R A;  2D1G A;  3BDG A;  3T01 A;  2W5X A;  2GLQ A;  3A52 A;  4UOO A;  1N2L A;  3T02 A;  1E3C P;  3WAX A;  4UPI A;  4KAV A;  5L0K A;  4UOP A;  3UN3 A;  5HRT A;  1E1Z P;  3KD8 A;  4YR1 A;  3DYC A;  4FDJ A;  4LQY A;  1KHL A;  1URB A;  4GTX A;  5C66 A;  3OT9 A;  3WAY A;  1AJB A;  1AJD A;  1ELY A;  3BDG B;  4KJG A;  2ZKT A;  4FDI A;  5LRM A;  1K7H A;  3MK1 A;  3CMR A;  3SZY A;  1SHN A;  1E2S P;  1ED9 A;  4GTZ A;  1AJC A;  4CXU A;  1KH7 A;  4KAY A;  4GTW A;  4LR8 A;  5K4P A;  3TG0 A;  1EW8 A;  3IGZ B;  4UPK A;  3TX0 A;  5TJ3 A;  1AUK A;  4ZG9 A;  3IGY B;  1KHK A;  4GTY A;  1ZED A;  2GA3 A;  3UO0 A;  4LRB A;  4KJD A;  1AJA A;  4UPH A;  3NKN A;  4LRF A;  3SZZ A;  3DPC A;  4NWJ A;  3UNY A;  5DLT A;  3ED4 A;  4CYS A;  1B8J A;  5IJS A;  3NKQ A;  1HDH A;  3MK2 A;  3UN5 A;  2GSU A;  2GSN A;  5GOV A;  1Y7A A;  4LRC A;  1Y6V A;  1HJK A;  4N7T A;  1EW9 A;  4CXS A;  2VQR A;  1ALJ A;  5INH A;  1O99 A;  2X98 A;  2ANH A;  1FSU A;  1ALH A;  1KH5 A;  3NVL A;  2W5V A;  1ZEF A;  2XRG A;  3NKP A;  4CXK A;  5DLW A;  2XR9 A;  5LQQ A;  1KH4 A;  5LRN A;  3T00 A;  5DLV A;  1ZEB A;  1O98 A;  2IUC B;  2QZU A;  1E33 P;  4ZG7 A;  4LRA A;  4CYR A;  4MHX A;  1URA A;  1KHJ A;  4NWX A;  4MIV A;  5AJ9 A;  5EGH A;  4TN0 A;  3M8Z A;  2W8D A;  5LIA A;  3E2D A;  4LRE A;  2IUC A;  4LR9 A;  4UPL A;  4LR7 A;  5IJQ A;  2W5S A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...