3IEFA

Crystal structure of trna guanine-n1-methyltransferase from bartonella henselae using mpcs.
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
Knots found
sequence length
229
structure length
224
Chain Sequence
KFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFASVDDTPAGGGAGMVMRADVLAAALDSCPNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFENGLLEHPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYALYNKNRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase, rna binding protein
molecule keywords tRNA (guanine-N(1)-)-methyltransferase
publication title Crystal structure of tRNA guanine-n1-methyltransferase from Bartonella henselae using MPCS.
rcsb
source organism Bartonella henselae
total genus 63
structure length 224
sequence length 229
chains with identical sequence B
other databases KnotProt 2.0: K +31
ec nomenclature ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date 2009-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.20 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A tRNA(m1g37)methyltransferase, domain 2 3iefA02
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 3iefA01
4H3YA 1ZJRA 2HA8A 2YY8A 4YQ7A 3IC6A 4YVHA 1V6ZA 1NS5A 3OIIA 3AIAA 4YQBA 4MCDA 4YQOA 1X7OA 1MXIA 1VH0A 4YQQA 4YQJA 1K3RA 3L8UA 1UAMA 4KDZA 4CNDA 4YQ1A 4YQ6A 3KY7A 4YQAA 5FAIA 4JAKA 1J85A 2Z0YA 4CNFA 4YQDA 4FAKA 3BBHA 4KGNA 4CNEA 3GYQA 5GMCA 4YQTA 3ILKA 4YQ2A 3AI9X 1GZ0A 2QMMA 3KW2A 3E5YA 3N4KA 3QUVA 1IPAA 4YQKA 2QWVA 1X7PA 2EGWA 4YQSA 4YPYA 1VHYA 4MCCA 4JALA 3OIJA 4YPWA 2I6DA 3KTYA 4YQ5A 4X3MA 4E8BA 1O6DA 1Z85A 4YVGA 4X3LA 1UAKA 4RG1A 4YQ9A 4YQGA 3BBEA 4YQIA 3ONPA 5GMBA 3DCMX 3IEFA 5D9FA 4XBOA 2EGVA 4YQ4A 4YVIA 4YQRA 1TO0A 4J3CA 4YQ0A 4YPXA 4YQLA 4YQ3A 5CO4A 1V2XA 3BBDA 4YQPA 1OY5A 4YQNA 3OINA 4YVJA 4CNGA 2V3KA 4YVKA 4L69A 4YQCA 3O7BA 2V3JA 4MCBA 1NXZA 2CX8A 3NK7A 3NK6A 3KNUA 3N4JA 1UAJA 4YQ8A 4YPZA 4PZKA 1P9PA 2O3AA 4H3ZA 1VHKA 5GM8A 3AXZA 4IG6A 1UALA
chains in the Genus database with same CATH superfamily
4H3YA 1ZJRA 3SSWN 2HA8A 2YY8A 4YQ7A 3IC6A 2OZ9R 4YVHA 1V6ZA 1NS5A 3FRWA 3OIIA 4JWGA 3AIAA 4YQBA 4MCDA 4YQOA 1X7OA 1MXIA 1VH0A 4YQQA 4YQJA 1K3RA 3L8UA 1UAMA 4KDZA 4CNDA 4YQ1A 4YQ6A 3KY7A 4YQAA 5FAIA 4JAKA 1J85A 2Z0YA 4CNFA 3KORA 4YQDA 4FAKA 1JHGA 3BBHA 4KGNA 4CNEA 3GYQA 5GMCA 4YQTA 3ILKA 4YQ2A 3AI9X 1GZ0A 4JWFA 2QMMA 1ZT9A 3KW2A 3E5YA 3N4KA 3QUVA 1WRTR 1IPAA 4YQKA 2QWVA 1X7PA 4YQSA 1VHYA 4YPYA 2EGWA 4MCCA 4JALA 3OIJA 4YPWA 2I6DA 3KTYA 4YQ5A 4JWJA 4X3MA 4E8BA 1WRSR 1O6DA 1Z85A 4YVGA 4X3LA 1UAKA 4FMWA 4RG1A 4YQ9A 1MI7R 4YQGA 3BBEA 4YQIA 3ONPA 5GMBA 3DCMX 3IEFA 5D9FA 4XBOA 2EGVA 4YQ4A 2XDIA 4YVIA 1TROA 4JWHA 4YQRA 1TO0A 4J3CA 4YQ0A 4YPXA 4YQLA 4YQ3A 5CO4A 1V2XA 3BBDA 1TRRA 4YQPA 1OY5A 4YQNA 3OINA 4YVJA 4CNGA 1WRPR 2V3KA 4YVKA 4L69A 3G1CA 1CO0A 4YQCA 3SSXN 3O7BA 2V3JA 4MCBA 1NXZA 2CX8A 3NK7A 3NK6A 3KNUA 3N4JA 1UAJA 4YQ8A 4YPZA 1RCSA 1P9PA 4PZKA 2O3AA 4H3ZA 1VHKA 3WRPA 5GM8A 3AXZA 4IG6A 1UALA
chains in the Genus database with same CATH topology
4H3YA 1ZJRA 2HA8A 2YY8A 4YQ7A 3IC6A 4YVHA 1V6ZA 1NS5A 3OIIA 4JWGA 3AIAA 4YQBA 4MCDA 4YQOA 1X7OA 1MXIA 1VH0A 4YQQA 4YQJA 1K3RA 3L8UA 1UAMA 4KDZA 4CNDA 4YQ1A 4YQ6A 3KY7A 4YQAA 5FAIA 4JAKA 1J85A 2Z0YA 4CNFA 4YQDA 4FAKA 3BBHA 4KGNA 4CNEA 3GYQA 5GMCA 4YQTA 3ILKA 4YQ2A 3AI9X 1GZ0A 4JWFA 2QMMA 3KW2A 3E5YA 3N4KA 3QUVA 1IPAA 4YQKA 2QWVA 1X7PA 2EGWA 4YQSA 4YPYA 1VHYA 4MCCA 4JALA 3OIJA 4YPWA 2I6DA 3KTYA 4YQ5A 4JWJA 4X3MA 4E8BA 1O6DA 1Z85A 4YVGA 4X3LA 1UAKA 4FMWA 4RG1A 4YQ9A 4YQGA 3BBEA 4YQIA 3ONPA 5GMBA 3DCMX 3IEFA 5D9FA 4XBOA 2EGVA 4YQ4A 4YVIA 4JWHA 4YQRA 1TO0A 4J3CA 4YQ0A 4YPXA 4YQLA 4YQ3A 5CO4A 1V2XA 3BBDA 4YQPA 1OY5A 4YQNA 3OINA 4YVJA 4CNGA 2V3KA 4YVKA 4L69A 4YQCA 3O7BA 2V3JA 4MCBA 1NXZA 2CX8A 3NK7A 3NK6A 3KNUA 3N4JA 1UAJA 4YQ8A 4YPZA 4PZKA 1P9PA 2O3AA 4H3ZA 1VHKA 5GM8A 3AXZA 4IG6A 1UALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3Y A;  1ZJR A;  2HA8 A;  2YY8 A;  4YQ7 A;  3IC6 A;  4YVH A;  1V6Z A;  1NS5 A;  3OII A;  3AIA A;  4YQB A;  4MCD A;  4YQO A;  1X7O A;  1MXI A;  1VH0 A;  4YQQ A;  4YQJ A;  1K3R A;  3L8U A;  1UAM A;  4KDZ A;  4CND A;  4YQ1 A;  4YQ6 A;  3KY7 A;  4YQA A;  5FAI A;  4JAK A;  1J85 A;  2Z0Y A;  4CNF A;  4YQD A;  4FAK A;  3BBH A;  4KGN A;  4CNE A;  3GYQ A;  5GMC A;  4YQT A;  3ILK A;  4YQ2 A;  3AI9 X;  1GZ0 A;  2QMM A;  3KW2 A;  3E5Y A;  3N4K A;  3QUV A;  1IPA A;  4YQK A;  2QWV A;  1X7P A;  2EGW A;  4YQS A;  4YPY A;  1VHY A;  4MCC A;  4JAL A;  3OIJ A;  4YPW A;  2I6D A;  3KTY A;  4YQ5 A;  4X3M A;  4E8B A;  1O6D A;  1Z85 A;  4YVG A;  4X3L A;  1UAK A;  4RG1 A;  4YQ9 A;  4YQG A;  3BBE A;  4YQI A;  3ONP A;  5GMB A;  3DCM X;  3IEF A;  5D9F A;  4XBO A;  2EGV A;  4YQ4 A;  4YVI A;  4YQR A;  1TO0 A;  4J3C A;  4YQ0 A;  4YPX A;  4YQL A;  4YQ3 A;  5CO4 A;  1V2X A;  3BBD A;  4YQP A;  1OY5 A;  4YQN A;  3OIN A;  4YVJ A;  4CNG A;  2V3K A;  4YVK A;  4L69 A;  4YQC A;  3O7B A;  2V3J A;  4MCB A;  1NXZ A;  2CX8 A;  3NK7 A;  3NK6 A;  3KNU A;  3N4J A;  1UAJ A;  4YQ8 A;  4YPZ A;  4PZK A;  1P9P A;  2O3A A;  4H3Z A;  1VHK A;  5GM8 A;  3AXZ A;  4IG6 A;  1UAL A; 
#chains in the Genus database with same CATH topology
 4H3Y A;  1ZJR A;  3SSW N;  2HA8 A;  2YY8 A;  4YQ7 A;  3IC6 A;  2OZ9 R;  4YVH A;  1V6Z A;  1NS5 A;  3FRW A;  3OII A;  4JWG A;  3AIA A;  4YQB A;  4MCD A;  4YQO A;  1X7O A;  1MXI A;  1VH0 A;  4YQQ A;  4YQJ A;  1K3R A;  3L8U A;  1UAM A;  4KDZ A;  4CND A;  4YQ1 A;  4YQ6 A;  3KY7 A;  4YQA A;  5FAI A;  4JAK A;  1J85 A;  2Z0Y A;  4CNF A;  3KOR A;  4YQD A;  4FAK A;  1JHG A;  3BBH A;  4KGN A;  4CNE A;  3GYQ A;  5GMC A;  4YQT A;  3ILK A;  4YQ2 A;  3AI9 X;  1GZ0 A;  4JWF A;  2QMM A;  1ZT9 A;  3KW2 A;  3E5Y A;  3N4K A;  3QUV A;  1WRT R;  1IPA A;  4YQK A;  2QWV A;  1X7P A;  4YQS A;  1VHY A;  4YPY A;  2EGW A;  4MCC A;  4JAL A;  3OIJ A;  4YPW A;  2I6D A;  3KTY A;  4YQ5 A;  4JWJ A;  4X3M A;  4E8B A;  1WRS R;  1O6D A;  1Z85 A;  4YVG A;  4X3L A;  1UAK A;  4FMW A;  4RG1 A;  4YQ9 A;  1MI7 R;  4YQG A;  3BBE A;  4YQI A;  3ONP A;  5GMB A;  3DCM X;  3IEF A;  5D9F A;  4XBO A;  2EGV A;  4YQ4 A;  2XDI A;  4YVI A;  1TRO A;  4JWH A;  4YQR A;  1TO0 A;  4J3C A;  4YQ0 A;  4YPX A;  4YQL A;  4YQ3 A;  5CO4 A;  1V2X A;  3BBD A;  1TRR A;  4YQP A;  1OY5 A;  4YQN A;  3OIN A;  4YVJ A;  4CNG A;  1WRP R;  2V3K A;  4YVK A;  4L69 A;  3G1C A;  1CO0 A;  4YQC A;  3SSX N;  3O7B A;  2V3J A;  4MCB A;  1NXZ A;  2CX8 A;  3NK7 A;  3NK6 A;  3KNU A;  3N4J A;  1UAJ A;  4YQ8 A;  4YPZ A;  1RCS A;  1P9P A;  4PZK A;  2O3A A;  4H3Z A;  1VHK A;  3WRP A;  5GM8 A;  3AXZ A;  4IG6 A;  1UAL A; 
#chains in the Genus database with same CATH homology
 4H3Y A;  1ZJR A;  2HA8 A;  2YY8 A;  4YQ7 A;  3IC6 A;  4YVH A;  1V6Z A;  1NS5 A;  3OII A;  4JWG A;  3AIA A;  4YQB A;  4MCD A;  4YQO A;  1X7O A;  1MXI A;  1VH0 A;  4YQQ A;  4YQJ A;  1K3R A;  3L8U A;  1UAM A;  4KDZ A;  4CND A;  4YQ1 A;  4YQ6 A;  3KY7 A;  4YQA A;  5FAI A;  4JAK A;  1J85 A;  2Z0Y A;  4CNF A;  4YQD A;  4FAK A;  3BBH A;  4KGN A;  4CNE A;  3GYQ A;  5GMC A;  4YQT A;  3ILK A;  4YQ2 A;  3AI9 X;  1GZ0 A;  4JWF A;  2QMM A;  3KW2 A;  3E5Y A;  3N4K A;  3QUV A;  1IPA A;  4YQK A;  2QWV A;  1X7P A;  2EGW A;  4YQS A;  4YPY A;  1VHY A;  4MCC A;  4JAL A;  3OIJ A;  4YPW A;  2I6D A;  3KTY A;  4YQ5 A;  4JWJ A;  4X3M A;  4E8B A;  1O6D A;  1Z85 A;  4YVG A;  4X3L A;  1UAK A;  4FMW A;  4RG1 A;  4YQ9 A;  4YQG A;  3BBE A;  4YQI A;  3ONP A;  5GMB A;  3DCM X;  3IEF A;  5D9F A;  4XBO A;  2EGV A;  4YQ4 A;  4YVI A;  4JWH A;  4YQR A;  1TO0 A;  4J3C A;  4YQ0 A;  4YPX A;  4YQL A;  4YQ3 A;  5CO4 A;  1V2X A;  3BBD A;  4YQP A;  1OY5 A;  4YQN A;  3OIN A;  4YVJ A;  4CNG A;  2V3K A;  4YVK A;  4L69 A;  4YQC A;  3O7B A;  2V3J A;  4MCB A;  1NXZ A;  2CX8 A;  3NK7 A;  3NK6 A;  3KNU A;  3N4J A;  1UAJ A;  4YQ8 A;  4YPZ A;  4PZK A;  1P9P A;  2O3A A;  4H3Z A;  1VHK A;  5GM8 A;  3AXZ A;  4IG6 A;  1UAL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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