3IEYA

Crystal structure of the functional nanoarchaeum equitans trna splicing endonuclease
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
153
structure length
147
Chain Sequence
IGYLFGNRVLVDELPLIEAYYLLDKGELEVYEDDKEEFLKKCLTYDERFLIRYKAYKELRDKGYTLGTALKFGADFRVYDIGVIPKKGKRSEREHSKWVLYPVSKDETFDFYEFASKNRVAHSTRKKMLMGIVSDKIEFIEVSWKKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/rna binding protein
molecule keywords tRNA-splicing endonuclease
publication title Crystal structure and assembly of the functional Nanoarchaeum equitans tRNA splicing endonuclease.
pubmed doi rcsb
source organism Nanoarchaeum equitans
total genus 37
structure length 147
sequence length 153
ec nomenclature ec 4.6.1.16: tRNA-intron lyase.
pdb deposition date 2009-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01974 tRNA_int_endo tRNA intron endonuclease, catalytic C-terminal domain
A PF02778 tRNA_int_endo_N tRNA intron endonuclease, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1170.20 Alpha Beta 3-Layer(aba) Sandwich MutS, DNA mismatch repair protein, domain I tRNA intron endonuclease, N-terminal domain 3ieyA01
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 3ieyA02
4TKKA 5FDKA 4QBLA 1XMXA 2OKFA 2WCWA 2ZYZA 1IPIA 2ZYZB 1RZNA 4QBNA 1GEFA 3DNXA 2GW6A 3FOVA 4TKDA 2WIZA 2CV8A 2OSTA 2WCZA 1OB9A 1R0VA 2EO0A 4QBOA 4FZ2A 1OB8A 3P1ZA 3P1ZB 1Y1OA 3IEYA 1Y88A 1ZP7A 2WIWA 2FCOA 1HH1A 2GJWA 1A79A 3AJVA 2INBA 3AJVB 2WJ0A 2VLDA 1RLVA 1T0FA 1R11A 3P1YA 1F1ZA
chains in the Genus database with same CATH superfamily
5FDKA 4QBLA 1XMXA 2WCWA 4DA2A 2ZYZB 2WIZA 1GEFA 2JJQA 3FOVA 4TKDA 3IF0X 2IXSA 4DAVA 2FKCA 1W7AA 2EO0A 4FZ2A 2O8CA 2O8CB 3THWA 1OB8A 1YNMA 3P1ZA 3P1ZB 1Y1OA 1WBBA 2O8FA 2FCOA 2O8FB 1HH1A 1A79A 3IEYB 2VLDA 1T0FA 1R11A 1NG9A 1OH7A 2FWRA 4G6UA 3BT7A 2O8DA 2O8DB 3ZLJA 1IPIA 2FKHB 1RZNA 4QBNA 2FLCA 2FL3A 3THXA 4E6ZA 1OB9A 2Z0RA 3THWB 2WIWA 2GJWA 2INBA 1F1ZA 4TKKA 1NNEA 1OH5A 2WTUA 3K0SA 2CV8A 1OH8A 4EV1A 2OSTA 3THXB 2WCZA 2W8MA 1FW6A 2O8EA 4QBOA 2DBSA 1ZP7A 2BH2A 1EWQA 1UWVA 2VS1A 4LQEA 1R0VA 2OKFA 2ZYZA 1OH6A 3DNXA 1WB9A 2GW6A 2O8BA 2O8BB 1E3MA 2CZRA 2O8EB 4G6VA 4ZQUA 1Y88A 3IEYA 4DAPA 3AJVA 3AJVB 2WJ0A 2FZ4A 1RLVA 1WBDA 3P1YA 3THYA 3THYB
chains in the Genus database with same CATH topology
4G6UA 3BT7A 4TKKA 5FDKA 4QBLA 1XMXA 2OKFA 2WCWA 2ZYZA 4DA2A 2FKHB 1IPIA 2ZYZB 1RZNA 4QBNA 1GEFA 2JJQA 2GW6A 3DNXA 3FOVA 4TKDA 2WIZA 2FLCA 2FL3A 2CV8A 4EV1A 2OSTA 3IF0X 4E6ZA 2IXSA 2WCZA 4DAVA 2W8MA 2CZRA 2FKCA 1OB9A 1R0VA 2EO0A 2Z0RA 4FZ2A 4G6VA 4QBOA 4ZQUA 2DBSA 1OB8A 1YNMA 3P1ZA 3P1ZB 1Y1OA 3IEYA 1Y88A 1ZP7A 4DAPA 2WIWA 2FCOA 2BH2A 1HH1A 2GJWA 1A79A 1UWVA 3AJVA 2INBA 3AJVB 3IEYB 2WJ0A 2VS1A 4LQEA 2VLDA 1RLVA 1T0FA 1R11A 3P1YA 1F1ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TKK A;  5FDK A;  4QBL A;  1XMX A;  2OKF A;  2WCW A;  2ZYZ A;  1IPI A;  2ZYZ B;  1RZN A;  4QBN A;  1GEF A;  3DNX A;  2GW6 A;  3FOV A;  4TKD A;  2WIZ A;  2CV8 A;  2OST A;  2WCZ A;  1OB9 A;  1R0V A;  2EO0 A;  4QBO A;  4FZ2 A;  1OB8 A;  3P1Z A;  3P1Z B;  1Y1O A;  3IEY A;  1Y88 A;  1ZP7 A;  2WIW A;  2FCO A;  1HH1 A;  2GJW A;  1A79 A;  3AJV A;  2INB A;  3AJV B;  2WJ0 A;  2VLD A;  1RLV A;  1T0F A;  1R11 A;  3P1Y A;  1F1Z A; 
#chains in the Genus database with same CATH topology
 5FDK A;  4QBL A;  1XMX A;  2WCW A;  4DA2 A;  2ZYZ B;  2WIZ A;  1GEF A;  2JJQ A;  3FOV A;  4TKD A;  3IF0 X;  2IXS A;  4DAV A;  2FKC A;  1W7A A;  2EO0 A;  4FZ2 A;  2O8C A;  2O8C B;  3THW A;  1OB8 A;  1YNM A;  3P1Z A;  3P1Z B;  1Y1O A;  1WBB A;  2O8F A;  2FCO A;  2O8F B;  1HH1 A;  1A79 A;  3IEY B;  2VLD A;  1T0F A;  1R11 A;  1NG9 A;  1OH7 A;  2FWR A;  4G6U A;  3BT7 A;  2O8D A;  2O8D B;  3ZLJ A;  1IPI A;  2FKH B;  1RZN A;  4QBN A;  2FLC A;  2FL3 A;  3THX A;  4E6Z A;  1OB9 A;  2Z0R A;  3THW B;  2WIW A;  2GJW A;  2INB A;  1F1Z A;  4TKK A;  1NNE A;  1OH5 A;  2WTU A;  3K0S A;  2CV8 A;  1OH8 A;  4EV1 A;  2OST A;  3THX B;  2WCZ A;  2W8M A;  1FW6 A;  2O8E A;  4QBO A;  2DBS A;  1ZP7 A;  2BH2 A;  1EWQ A;  1UWV A;  2VS1 A;  4LQE A;  1R0V A;  2OKF A;  2ZYZ A;  1OH6 A;  3DNX A;  1WB9 A;  2GW6 A;  2O8B A;  2O8B B;  1E3M A;  2CZR A;  2O8E B;  4G6V A;  4ZQU A;  1Y88 A;  3IEY A;  4DAP A;  3AJV A;  3AJV B;  2WJ0 A;  2FZ4 A;  1RLV A;  1WBD A;  3P1Y A;  3THY A;  3THY B; 
#chains in the Genus database with same CATH homology
 4G6U A;  3BT7 A;  4TKK A;  5FDK A;  4QBL A;  1XMX A;  2OKF A;  2WCW A;  2ZYZ A;  4DA2 A;  2FKH B;  1IPI A;  2ZYZ B;  1RZN A;  4QBN A;  1GEF A;  2JJQ A;  2GW6 A;  3DNX A;  3FOV A;  4TKD A;  2WIZ A;  2FLC A;  2FL3 A;  2CV8 A;  4EV1 A;  2OST A;  3IF0 X;  4E6Z A;  2IXS A;  2WCZ A;  4DAV A;  2W8M A;  2CZR A;  2FKC A;  1OB9 A;  1R0V A;  2EO0 A;  2Z0R A;  4FZ2 A;  4G6V A;  4QBO A;  4ZQU A;  2DBS A;  1OB8 A;  1YNM A;  3P1Z A;  3P1Z B;  1Y1O A;  3IEY A;  1Y88 A;  1ZP7 A;  4DAP A;  2WIW A;  2FCO A;  2BH2 A;  1HH1 A;  2GJW A;  1A79 A;  1UWV A;  3AJV A;  2INB A;  3AJV B;  3IEY B;  2WJ0 A;  2VS1 A;  4LQE A;  2VLD A;  1RLV A;  1T0F A;  1R11 A;  3P1Y A;  1F1Z A; 
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similar chains in the pdb database (?% sequence similarity)

 
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