3IGZB

Crystal structures of leishmania mexicana phosphoglycerate mutase at low cobalt concentration
Total Genus 207
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
207
Knots found
sequence length
549
structure length
549
Chain Sequence
LLLKPHKDLPRRTVLIVVMDGLGIGPEDDYDAVHMASTPFMDAHRRDNRHFRCVRAHGTAVGLPTDADMGNSEVGHNALGAGRVALQGASLVDDAIKSGEIYTGEGYRYLHGAFSKEGSTLHLIGLLSDGGVHSRDNQIYSIIEHAVKDGAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRMFVTMDRYDADWSIVERGWRAQVLGDARHFHSAKEAITTFREEDPKVTDQYYPPFIVVDEQDKPLGTIEDGDAVLCVNFRGDRVIEMTRAFEDEDFNKFDRVRVPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLNIFACSETQKFGHVTYFWNGNRSGKIDEKHETFKEVPSDRVQFNEKPRMQSAAITEAAIEALKSGMYNVVRINFPNGDMVGHTGDLKATITGVEAVDESLAKLKDAVDSVNGVYIVTADHGNSDDMAQRDKKGKPMKDGNGNVLPLTSHTLSPVPVFIGGAGLDPRVAMRTDLPAAGLANVTATFINLLGFEAPEDYEPSLIYVE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords Cofactor-independent phosphoglycerate mutase
publication title Crystal structures of Leishmania mexicana phosphoglycerate mutase suggest a one-metal mechanism and a new enzyme subclass
pubmed doi rcsb
source organism Leishmania mexicana
total genus 207
structure length 549
sequence length 549
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2009-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01676 Metalloenzyme Metalloenzyme superfamily
B PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3igzB01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3igzB02
4NWXA 1ALJA 1URAA 5GOVA 3TWZA 4ZG9A 4LRBA 4KAVA 5L0EA 3M8YA 5GRRA 3BDHA 1KH4A 1ALKA 1URBA 4CYSA 3UN2A 2X98A 4UORA 4ZGAA 1ELZA 3OT9A 3UO0A 4CXSA 1ALHA 1EW8A 4MIVA 5HRTA 1HDHA 1N2KA 3E2DA 3M8WA 1AJCA 1N2LA 3SZZA 4GTXA 3MK1A 4LRDA 3NVLA 3WAYA 2IUCA 1SHNA 2IUCB 4CXKA 4UPLA 3BDFA 1AJDA 1E3CP 5L0KA 5DLTA 4N7TA 5LQQA 1ANIA 2W5XA 2GLQA 1EQJA 1SHQA 2D1GA 3UN3A 2QZUA 1ELXA 3DYCA 3Q3QA 4UOPA 3BDGA 3BDGB 3NKNA 1AUKA 3MK2A 4GTYA 3DPCA 5TJ3A 1ANJA 4LR8A 1EJJA 3TG0A 1ZEDA 4TN0A 4LREA 3WBHA 4YR1A 2IFYA 4LR9A 1ED9A 1O98A 1E1ZP 3NKQA 2GA3A 4UPKA 5K4PA 4CXUA 3T01A 5AJ9A 4MY4A 1P49A 1ALIA 5L0BA 4KJGA 1HQAA 3A52A 1O99A 1AJAA 1EW2A 3WAWA 1Y6VA 1KHNA 4LRFA 4MHXA 1FSUA 1ED8A 5IJQA 1K7HA 5EGEA 5IJSA 3ED4A 3CMRA 5DLVA 2W5TA 3NKRA 2W5SA 4KM4A 1KH5A 2ANHA 1EI6A 1KH9A 4UOOA 3UN5A 1KHJA 2G9YA 2W5RA 3NKOA 4NWJA 4KAYA 2XR9A 2GSNA 5KXAA 3IDDA 3IGZB 3UNYA 3WAVA 4UPHA 5LIAA 1KHKA 2W5WA 3MK0A 3IGYB 4LR2A 4UPIA 3NKMA 1ZEFA 5LRMA 2W5QA 2W8SA 1B8JA 4ZG7A 4GTZA 4CYRA 3KD8A 2XRGA 3T02A 4ZG6A 1KHLA 4LR7A 4FDIA 4LRCA 4GTWA 5EGHA 2VQRA 3B5QA 3TX0A 5INHA 3WAXA 2GSOA 3M7VA 3M8ZA 2ZKTA 4FDJA 2W8DA 1E2SP 2RH6A 4KJDA 3SZYA 5C66A 1E33P 4LRAA 1Y7AA 1ELYA 1AJBA 1EW9A 1HJKA 2GSUA 3NKPA 4LQYA 4QAXA 3T00A 1ZEBA 5LRNA 3LXQA 4B56A 1KH7A 2W5VA 5DLWA
chains in the Genus database with same CATH superfamily
4NWXA 1ALJA 1URAA 5GOVA 3TWZA 4ZG9A 4LRBA 4KAVA 5L0EA 3M8YA 5GRRA 3BDHA 1KH4A 1ALKA 1URBA 4CYSA 3UN2A 2X98A 4UORA 4ZGAA 1ELZA 3OT9A 3UO0A 4CXSA 1ALHA 1EW8A 4MIVA 5HRTA 1HDHA 1N2KA 3E2DA 3M8WA 1AJCA 1N2LA 3SZZA 4GTXA 3MK1A 4LRDA 3NVLA 3WAYA 2IUCA 1SHNA 2IUCB 4CXKA 4UPLA 3BDFA 1AJDA 1E3CP 5L0KA 5DLTA 4N7TA 5LQQA 1ANIA 2W5XA 2GLQA 1EQJA 1SHQA 2D1GA 3UN3A 2QZUA 1ELXA 3DYCA 3Q3QA 4UOPA 3BDGA 3BDGB 3NKNA 1AUKA 3MK2A 4GTYA 3DPCA 5TJ3A 1ANJA 4LR8A 1EJJA 3TG0A 1ZEDA 4TN0A 4LREA 3WBHA 4YR1A 2IFYA 4LR9A 1ED9A 1O98A 1E1ZP 3NKQA 2GA3A 4UPKA 5K4PA 4CXUA 3T01A 5AJ9A 4MY4A 1P49A 1ALIA 5L0BA 4KJGA 1HQAA 3A52A 1O99A 1AJAA 1EW2A 3WAWA 1Y6VA 1KHNA 4LRFA 4MHXA 1FSUA 1ED8A 5IJQA 1K7HA 5EGEA 5IJSA 3ED4A 3CMRA 5DLVA 2W5TA 3NKRA 2W5SA 4KM4A 1KH5A 2ANHA 1EI6A 1KH9A 4UOOA 3UN5A 1KHJA 2G9YA 2W5RA 3NKOA 4NWJA 4KAYA 2XR9A 2GSNA 5KXAA 3IDDA 3IGZB 3UNYA 3WAVA 4UPHA 5LIAA 1KHKA 2W5WA 3MK0A 3IGYB 4LR2A 4UPIA 3NKMA 1ZEFA 5LRMA 2W5QA 2W8SA 1B8JA 4ZG7A 4GTZA 4CYRA 3KD8A 2XRGA 3T02A 4ZG6A 1KHLA 4LR7A 4FDIA 4LRCA 4GTWA 5EGHA 2VQRA 3B5QA 3TX0A 5INHA 3WAXA 2GSOA 3M7VA 3M8ZA 2ZKTA 4FDJA 2W8DA 1E2SP 2RH6A 4KJDA 3SZYA 5C66A 1E33P 4LRAA 1Y7AA 1ELYA 1AJBA 1EW9A 1HJKA 2GSUA 3NKPA 4LQYA 4QAXA 3T00A 1ZEBA 5LRNA 3LXQA 4B56A 1KH7A 2W5VA 5DLWA
chains in the Genus database with same CATH topology
4NWXA 1ALJA 1URAA 5GOVA 3TWZA 4ZG9A 4LRBA 4KAVA 5L0EA 3M8YA 5GRRA 3BDHA 1KH4A 1ALKA 1URBA 4CYSA 3UN2A 2X98A 4UORA 4ZGAA 1ELZA 3OT9A 3UO0A 4CXSA 1ALHA 1EW8A 4MIVA 5HRTA 1HDHA 1N2KA 3E2DA 3M8WA 1AJCA 1N2LA 3SZZA 4GTXA 3MK1A 4LRDA 3NVLA 3WAYA 2IUCA 1SHNA 2IUCB 4CXKA 4UPLA 3BDFA 1AJDA 1E3CP 5L0KA 5DLTA 4N7TA 5LQQA 1ANIA 2W5XA 2GLQA 1EQJA 1SHQA 2D1GA 3UN3A 2QZUA 1ELXA 3DYCA 3Q3QA 4UOPA 3BDGA 3BDGB 3NKNA 1AUKA 3MK2A 4GTYA 3DPCA 5TJ3A 1ANJA 4LR8A 1EJJA 3TG0A 1ZEDA 4TN0A 4LREA 3WBHA 4YR1A 2IFYA 4LR9A 1ED9A 1O98A 1E1ZP 3NKQA 2GA3A 4UPKA 5K4PA 4CXUA 3T01A 5AJ9A 4MY4A 1P49A 1ALIA 5L0BA 4KJGA 1HQAA 3A52A 1O99A 1AJAA 1EW2A 3WAWA 1Y6VA 1KHNA 4LRFA 4MHXA 1FSUA 1ED8A 5IJQA 1K7HA 5EGEA 5IJSA 3ED4A 3CMRA 5DLVA 2W5TA 3NKRA 2W5SA 4KM4A 1KH5A 2ANHA 1EI6A 1KH9A 4UOOA 3UN5A 1KHJA 2G9YA 2W5RA 3NKOA 4NWJA 4KAYA 2XR9A 2GSNA 5KXAA 3IDDA 3IGZB 3UNYA 3WAVA 4UPHA 5LIAA 1KHKA 2W5WA 3MK0A 3IGYB 4LR2A 4UPIA 3NKMA 1ZEFA 5LRMA 2W5QA 2W8SA 1B8JA 4ZG7A 4GTZA 4CYRA 3KD8A 2XRGA 3T02A 4ZG6A 1KHLA 4LR7A 4FDIA 4LRCA 4GTWA 5EGHA 2VQRA 3B5QA 3TX0A 5INHA 3WAXA 2GSOA 3M7VA 3M8ZA 2ZKTA 4FDJA 2W8DA 1E2SP 2RH6A 4KJDA 3SZYA 5C66A 1E33P 4LRAA 1Y7AA 1ELYA 1AJBA 1EW9A 1HJKA 2GSUA 3NKPA 4LQYA 4QAXA 3T00A 1ZEBA 5LRNA 3LXQA 4B56A 1KH7A 2W5VA 5DLWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NWX A;  1ALJ A;  1URA A;  5GOV A;  3TWZ A;  4ZG9 A;  4LRB A;  4KAV A;  5L0E A;  3M8Y A;  5GRR A;  3BDH A;  1KH4 A;  1ALK A;  1URB A;  4CYS A;  3UN2 A;  2X98 A;  4UOR A;  4ZGA A;  1ELZ A;  3OT9 A;  3UO0 A;  4CXS A;  1ALH A;  1EW8 A;  4MIV A;  5HRT A;  1HDH A;  1N2K A;  3E2D A;  3M8W A;  1AJC A;  1N2L A;  3SZZ A;  4GTX A;  3MK1 A;  4LRD A;  3NVL A;  3WAY A;  2IUC A;  1SHN A;  2IUC B;  4CXK A;  4UPL A;  3BDF A;  1AJD A;  1E3C P;  5L0K A;  5DLT A;  4N7T A;  5LQQ A;  1ANI A;  2W5X A;  2GLQ A;  1EQJ A;  1SHQ A;  2D1G A;  3UN3 A;  2QZU A;  1ELX A;  3DYC A;  3Q3Q A;  4UOP A;  3BDG A;  3BDG B;  3NKN A;  1AUK A;  3MK2 A;  4GTY A;  3DPC A;  5TJ3 A;  1ANJ A;  4LR8 A;  1EJJ A;  3TG0 A;  1ZED A;  4TN0 A;  4LRE A;  3WBH A;  4YR1 A;  2IFY A;  4LR9 A;  1ED9 A;  1O98 A;  1E1Z P;  3NKQ A;  2GA3 A;  4UPK A;  5K4P A;  4CXU A;  3T01 A;  5AJ9 A;  4MY4 A;  1P49 A;  1ALI A;  5L0B A;  4KJG A;  1HQA A;  3A52 A;  1O99 A;  1AJA A;  1EW2 A;  3WAW A;  1Y6V A;  1KHN A;  4LRF A;  4MHX A;  1FSU A;  1ED8 A;  5IJQ A;  1K7H A;  5EGE A;  5IJS A;  3ED4 A;  3CMR A;  5DLV A;  2W5T A;  3NKR A;  2W5S A;  4KM4 A;  1KH5 A;  2ANH A;  1EI6 A;  1KH9 A;  4UOO A;  3UN5 A;  1KHJ A;  2G9Y A;  2W5R A;  3NKO A;  4NWJ A;  4KAY A;  2XR9 A;  2GSN A;  5KXA A;  3IDD A;  3IGZ B;  3UNY A;  3WAV A;  4UPH A;  5LIA A;  1KHK A;  2W5W A;  3MK0 A;  3IGY B;  4LR2 A;  4UPI A;  3NKM A;  1ZEF A;  5LRM A;  2W5Q A;  2W8S A;  1B8J A;  4ZG7 A;  4GTZ A;  4CYR A;  3KD8 A;  2XRG A;  3T02 A;  4ZG6 A;  1KHL A;  4LR7 A;  4FDI A;  4LRC A;  4GTW A;  5EGH A;  2VQR A;  3B5Q A;  3TX0 A;  5INH A;  3WAX A;  2GSO A;  3M7V A;  3M8Z A;  2ZKT A;  4FDJ A;  2W8D A;  1E2S P;  2RH6 A;  4KJD A;  3SZY A;  5C66 A;  1E33 P;  4LRA A;  1Y7A A;  1ELY A;  1AJB A;  1EW9 A;  1HJK A;  2GSU A;  3NKP A;  4LQY A;  4QAX A;  3T00 A;  1ZEB A;  5LRN A;  3LXQ A;  4B56 A;  1KH7 A;  2W5V A;  5DLW A; 
#chains in the Genus database with same CATH topology
 4NWX A;  1ALJ A;  1URA A;  5GOV A;  3TWZ A;  4ZG9 A;  4LRB A;  4KAV A;  5L0E A;  3M8Y A;  5GRR A;  3BDH A;  1KH4 A;  1ALK A;  1URB A;  4CYS A;  3UN2 A;  2X98 A;  4UOR A;  4ZGA A;  1ELZ A;  3OT9 A;  3UO0 A;  4CXS A;  1ALH A;  1EW8 A;  4MIV A;  5HRT A;  1HDH A;  1N2K A;  3E2D A;  3M8W A;  1AJC A;  1N2L A;  3SZZ A;  4GTX A;  3MK1 A;  4LRD A;  3NVL A;  3WAY A;  2IUC A;  1SHN A;  2IUC B;  4CXK A;  4UPL A;  3BDF A;  1AJD A;  1E3C P;  5L0K A;  5DLT A;  4N7T A;  5LQQ A;  1ANI A;  2W5X A;  2GLQ A;  1EQJ A;  1SHQ A;  2D1G A;  3UN3 A;  2QZU A;  1ELX A;  3DYC A;  3Q3Q A;  4UOP A;  3BDG A;  3BDG B;  3NKN A;  1AUK A;  3MK2 A;  4GTY A;  3DPC A;  5TJ3 A;  1ANJ A;  4LR8 A;  1EJJ A;  3TG0 A;  1ZED A;  4TN0 A;  4LRE A;  3WBH A;  4YR1 A;  2IFY A;  4LR9 A;  1ED9 A;  1O98 A;  1E1Z P;  3NKQ A;  2GA3 A;  4UPK A;  5K4P A;  4CXU A;  3T01 A;  5AJ9 A;  4MY4 A;  1P49 A;  1ALI A;  5L0B A;  4KJG A;  1HQA A;  3A52 A;  1O99 A;  1AJA A;  1EW2 A;  3WAW A;  1Y6V A;  1KHN A;  4LRF A;  4MHX A;  1FSU A;  1ED8 A;  5IJQ A;  1K7H A;  5EGE A;  5IJS A;  3ED4 A;  3CMR A;  5DLV A;  2W5T A;  3NKR A;  2W5S A;  4KM4 A;  1KH5 A;  2ANH A;  1EI6 A;  1KH9 A;  4UOO A;  3UN5 A;  1KHJ A;  2G9Y A;  2W5R A;  3NKO A;  4NWJ A;  4KAY A;  2XR9 A;  2GSN A;  5KXA A;  3IDD A;  3IGZ B;  3UNY A;  3WAV A;  4UPH A;  5LIA A;  1KHK A;  2W5W A;  3MK0 A;  3IGY B;  4LR2 A;  4UPI A;  3NKM A;  1ZEF A;  5LRM A;  2W5Q A;  2W8S A;  1B8J A;  4ZG7 A;  4GTZ A;  4CYR A;  3KD8 A;  2XRG A;  3T02 A;  4ZG6 A;  1KHL A;  4LR7 A;  4FDI A;  4LRC A;  4GTW A;  5EGH A;  2VQR A;  3B5Q A;  3TX0 A;  5INH A;  3WAX A;  2GSO A;  3M7V A;  3M8Z A;  2ZKT A;  4FDJ A;  2W8D A;  1E2S P;  2RH6 A;  4KJD A;  3SZY A;  5C66 A;  1E33 P;  4LRA A;  1Y7A A;  1ELY A;  1AJB A;  1EW9 A;  1HJK A;  2GSU A;  3NKP A;  4LQY A;  4QAX A;  3T00 A;  1ZEB A;  5LRN A;  3LXQ A;  4B56 A;  1KH7 A;  2W5V A;  5DLW A; 
#chains in the Genus database with same CATH homology
 4NWX A;  1ALJ A;  1URA A;  5GOV A;  3TWZ A;  4ZG9 A;  4LRB A;  4KAV A;  5L0E A;  3M8Y A;  5GRR A;  3BDH A;  1KH4 A;  1ALK A;  1URB A;  4CYS A;  3UN2 A;  2X98 A;  4UOR A;  4ZGA A;  1ELZ A;  3OT9 A;  3UO0 A;  4CXS A;  1ALH A;  1EW8 A;  4MIV A;  5HRT A;  1HDH A;  1N2K A;  3E2D A;  3M8W A;  1AJC A;  1N2L A;  3SZZ A;  4GTX A;  3MK1 A;  4LRD A;  3NVL A;  3WAY A;  2IUC A;  1SHN A;  2IUC B;  4CXK A;  4UPL A;  3BDF A;  1AJD A;  1E3C P;  5L0K A;  5DLT A;  4N7T A;  5LQQ A;  1ANI A;  2W5X A;  2GLQ A;  1EQJ A;  1SHQ A;  2D1G A;  3UN3 A;  2QZU A;  1ELX A;  3DYC A;  3Q3Q A;  4UOP A;  3BDG A;  3BDG B;  3NKN A;  1AUK A;  3MK2 A;  4GTY A;  3DPC A;  5TJ3 A;  1ANJ A;  4LR8 A;  1EJJ A;  3TG0 A;  1ZED A;  4TN0 A;  4LRE A;  3WBH A;  4YR1 A;  2IFY A;  4LR9 A;  1ED9 A;  1O98 A;  1E1Z P;  3NKQ A;  2GA3 A;  4UPK A;  5K4P A;  4CXU A;  3T01 A;  5AJ9 A;  4MY4 A;  1P49 A;  1ALI A;  5L0B A;  4KJG A;  1HQA A;  3A52 A;  1O99 A;  1AJA A;  1EW2 A;  3WAW A;  1Y6V A;  1KHN A;  4LRF A;  4MHX A;  1FSU A;  1ED8 A;  5IJQ A;  1K7H A;  5EGE A;  5IJS A;  3ED4 A;  3CMR A;  5DLV A;  2W5T A;  3NKR A;  2W5S A;  4KM4 A;  1KH5 A;  2ANH A;  1EI6 A;  1KH9 A;  4UOO A;  3UN5 A;  1KHJ A;  2G9Y A;  2W5R A;  3NKO A;  4NWJ A;  4KAY A;  2XR9 A;  2GSN A;  5KXA A;  3IDD A;  3IGZ B;  3UNY A;  3WAV A;  4UPH A;  5LIA A;  1KHK A;  2W5W A;  3MK0 A;  3IGY B;  4LR2 A;  4UPI A;  3NKM A;  1ZEF A;  5LRM A;  2W5Q A;  2W8S A;  1B8J A;  4ZG7 A;  4GTZ A;  4CYR A;  3KD8 A;  2XRG A;  3T02 A;  4ZG6 A;  1KHL A;  4LR7 A;  4FDI A;  4LRC A;  4GTW A;  5EGH A;  2VQR A;  3B5Q A;  3TX0 A;  5INH A;  3WAX A;  2GSO A;  3M7V A;  3M8Z A;  2ZKT A;  4FDJ A;  2W8D A;  1E2S P;  2RH6 A;  4KJD A;  3SZY A;  5C66 A;  1E33 P;  4LRA A;  1Y7A A;  1ELY A;  1AJB A;  1EW9 A;  1HJK A;  2GSU A;  3NKP A;  4LQY A;  4QAX A;  3T00 A;  1ZEB A;  5LRN A;  3LXQ A;  4B56 A;  1KH7 A;  2W5V A;  5DLW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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