3IM2A

Structure of the c-terminal sec63 unit of yeast brr2, p41212 form
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
320
structure length
320
Chain Sequence
ISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLNATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLTIWCVCDSYLDADKELSFEINVK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords Pre-mRNA-splicing helicase BRR2
publication title Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
rcsb
source organism Saccharomyces cerevisiae
total genus 93
structure length 320
sequence length 320
ec nomenclature ec 3.6.4.13: RNA helicase.
pdb deposition date 2009-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02889 Sec63 Sec63 Brl domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3380.10 Mainly Alpha Orthogonal Bundle Sec63 N-terminal domain-like fold Sec63 N-terminal domain-like domain 3im2A01
2Q0ZX 4BGDA 4F92B 4KITB 4F91B 3IM2A 3HIBA 4F93B 3IM1A
chains in the Genus database with same CATH superfamily
2Q0ZX 2P6RA 4BGDA 2P6UA 4BUJA 4F92B 2ZJAA 2VA8A 4F93B 4KITB 4F91B 2ZJ8A 3IM2A 3HIBA 2XGJA 2ZJ5A 2ZJ2A 3IM1A
chains in the Genus database with same CATH topology
2Q0ZX 4BGDA 4F92B 4KITB 4F91B 3IM2A 3HIBA 4F93B 3IM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q0Z X;  4BGD A;  4F92 B;  4KIT B;  4F91 B;  3IM2 A;  3HIB A;  4F93 B;  3IM1 A; 
#chains in the Genus database with same CATH topology
 2Q0Z X;  2P6R A;  4BGD A;  2P6U A;  4BUJ A;  4F92 B;  2ZJA A;  2VA8 A;  4F93 B;  4KIT B;  4F91 B;  2ZJ8 A;  3IM2 A;  3HIB A;  2XGJ A;  2ZJ5 A;  2ZJ2 A;  3IM1 A; 
#chains in the Genus database with same CATH homology
 2Q0Z X;  4BGD A;  4F92 B;  4KIT B;  4F91 B;  3IM2 A;  3HIB A;  4F93 B;  3IM1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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