3K93A

Crystal structure of phage related exonuclease (yp_719632.1) from haemophilus somnus 129pt at 2.15 a resolution
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
223
structure length
223
Chain Sequence
GMNNLYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYNAFEGNKYTQKGNELEEQAIKLSGVTRGLALKKNTERRENEFITGECDIYVPSRKLIIDTKCSWDIGSHPFFTDEAQEKAKKAGYDIQMQGYMWLWDCDQAQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQKYYDQLISEMS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords phage related exonuclease
publication title Crystal structure of phage related exonuclease (YP_719632.1) from HAEMOPHILUS SOMNUS 129PT at 2.15 A resolution
rcsb
source organism Haemophilus somnus 129pt
total genus 73
structure length 223
sequence length 223
ec nomenclature
pdb deposition date 2009-10-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.320.10 Alpha Beta Alpha-Beta Complex Lambda Exonuclease; Chain A Lambda Exonuclease; Chain A 3k93A00
4CEIA 3U4QA 4WUZA 3SLPA 3U44A 3SZ4A 4CEHA 3SYYA 1AVQA 3SZ5A 4R5QA 4IC1A 1W36B 3K70B 3K93A 4CEJA 3SM4A 3L0AA 3H4RA 5LD2B
chains in the Genus database with same CATH superfamily
1HBNC 1E6VC 5A8WC 3M30C 3M32C 4CEIA 3U4QA 4WUZA 3SLPA 3M2RC 3U44A 5A0YC 3SZ4A 1HBOC 3SQGC 5A8KC 4CEHA 3SYYA 1HBUC 1AVQA 1E6YC 1MROC 3M2UC 3M2VC 3SZ5A 4R5QA 5G0RC 5A8RC 4IC1A 1W36B 3K70B 3K93A 1HBMC 4CEJA 3M1VC 3L0AA 3POTC 3SM4A 3H4RA 5LD2B
chains in the Genus database with same CATH topology
4CEIA 3U4QA 4WUZA 3SLPA 3U44A 3SZ4A 4CEHA 3SYYA 1AVQA 3SZ5A 4R5QA 4IC1A 1W36B 3K70B 3K93A 4CEJA 3SM4A 3L0AA 3H4RA 5LD2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CEI A;  3U4Q A;  4WUZ A;  3SLP A;  3U44 A;  3SZ4 A;  4CEH A;  3SYY A;  1AVQ A;  3SZ5 A;  4R5Q A;  4IC1 A;  1W36 B;  3K70 B;  3K93 A;  4CEJ A;  3SM4 A;  3L0A A;  3H4R A;  5LD2 B; 
#chains in the Genus database with same CATH topology
 1HBN C;  1E6V C;  5A8W C;  3M30 C;  3M32 C;  4CEI A;  3U4Q A;  4WUZ A;  3SLP A;  3M2R C;  3U44 A;  5A0Y C;  3SZ4 A;  1HBO C;  3SQG C;  5A8K C;  4CEH A;  3SYY A;  1HBU C;  1AVQ A;  1E6Y C;  1MRO C;  3M2U C;  3M2V C;  3SZ5 A;  4R5Q A;  5G0R C;  5A8R C;  4IC1 A;  1W36 B;  3K70 B;  3K93 A;  1HBM C;  4CEJ A;  3M1V C;  3L0A A;  3POT C;  3SM4 A;  3H4R A;  5LD2 B; 
#chains in the Genus database with same CATH homology
 4CEI A;  3U4Q A;  4WUZ A;  3SLP A;  3U44 A;  3SZ4 A;  4CEH A;  3SYY A;  1AVQ A;  3SZ5 A;  4R5Q A;  4IC1 A;  1W36 B;  3K70 B;  3K93 A;  4CEJ A;  3SM4 A;  3L0A A;  3H4R A;  5LD2 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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