3KATA

Crystal structure of the card domain of the human nlrp1 protein, northeast structural genomics consortium target hr3486e
Total Genus 21
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
84
structure length
84
Chain Sequence
LHFVDQYREQLIARVTSVEVVLDKLHGQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Apoptosis
molecule keywords NACHT, LRR and PYD domains-containing protein 1
publication title Northeast Structural Genomics Consortium Target HR3486E
rcsb
source organism Homo sapiens
total genus 21
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00619 CARD Caspase recruitment domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 3katA00
4RHWA 1A1WA 2MB9A 1E41A 4O9FA 4I16A 4ZBWA 2GF5A 3QF2A 4JQWA 4NQKA 4N1LA 2MPCA 1DGNA 4M9XA 2A5YB 4FH0A 2N83A 1PN5A 2NAQA 1WMGA 1DDFA 4N1KA 1WH4A 3YGSC 4IZ5E 4A2WA 2LS7A 4O6XA 2B1WA 4D8OA 2YVIA 3CRDA 1N3KA 2N7ZA 2OF5H 4P4HI 1ICHA 1FADA 4O7QA 3KATA 1NGRA 2O71A 2BBZA 3EZQA 3T6PA 2L6AA 2YU0A 2KM6A 2D96A 4F44A 4M9ZA 4EWIA 3MOPG 4O9LA 2LWEA 2M5VA 3LQRA 3MOPK 3CL3A 2N80A 4LWDA 4IZAB 4E9MA 1D2ZB 2N00A 2A9IA 2DBGA 2P1HA 4M9SA 3LQQA 4IZ7B 2N97A 2MS7A 3YGSP 1A1ZA 4F42A 1CY5A 1WXPA 2IB1A 2L9MA 2MS8A 1UCPA 2G7RA 2NZ7A 2OF5A 2BBRA 1Z6TA 4UZ0A 2MN4A 1E3YA 3J63A 2HM2Q 2NSNA 1D2ZA 2DO9A 4P4HA 1YGOA 4A2QA 4RHWE 3J6JA 2N1FA 1C15A 4JUPA 4DWNA 2LWDA 2DBHA 3MOPA 2YGSA 4QOBA 1CWWA 2KN6A 2VGQA 2F1SA 2YQFA 4N1JA 3EZQB 2DBDA 2DBFA
chains in the Genus database with same CATH superfamily
4RHWA 1A1WA 2MB9A 1E41A 4O9FA 4I16A 4ZBWA 2GF5A 3QF2A 4JQWA 4NQKA 4N1LA 2MPCA 1DGNA 4M9XA 2A5YB 4FH0A 2N83A 1PN5A 2NAQA 1WMGA 1DDFA 4N1KA 1WH4A 3YGSC 4IZ5E 4A2WA 2LS7A 4O6XA 2B1WA 4D8OA 2YVIA 3CRDA 1N3KA 2N7ZA 2OF5H 4P4HI 1ICHA 1FADA 4O7QA 3KATA 1NGRA 2O71A 2BBZA 3EZQA 3T6PA 2L6AA 2YU0A 2KM6A 2D96A 4F44A 4M9ZA 4EWIA 3MOPG 4O9LA 2LWEA 2M5VA 2XV9A 3LQRA 3MOPK 3CL3A 2N80A 4LWDA 4IZAB 4E9MA 1D2ZB 2N00A 2A9IA 2DBGA 2P1HA 4M9SA 3LQQA 4IZ7B 2N97A 2MS7A 3YGSP 1A1ZA 4F42A 1CY5A 1WXPA 2IB1A 2MJMA 2L9MA 2MS8A 1UCPA 2G7RA 2NZ7A 2OF5A 2BBRA 1Z6TA 4UZ0A 2MN4A 1E3YA 3J63A 2HM2Q 2NSNA 1D2ZA 2DO9A 4P4HA 1YGOA 4A2QA 4RHWE 3J6JA 2N1FA 1C15A 4JUPA 4DWNA 2LWDA 2DBHA 3MOPA 2YGSA 4QOBA 1CWWA 2KN6A 2VGQA 2F1SA 2YQFA 4N1JA 3EZQB 2DBDA 2DBFA
chains in the Genus database with same CATH topology
4RHWA 1A1WA 2MB9A 1E41A 4O9FA 4I16A 4ZBWA 2GF5A 3QF2A 4JQWA 4NQKA 4N1LA 2MPCA 1DGNA 4M9XA 2A5YB 4FH0A 2N83A 1PN5A 2NAQA 1WMGA 1DDFA 4N1KA 1WH4A 3YGSC 4IZ5E 4A2WA 2LS7A 4O6XA 2B1WA 4D8OA 2YVIA 3CRDA 1N3KA 2N7ZA 2OF5H 4P4HI 1ICHA 1FADA 4O7QA 3KATA 1NGRA 2O71A 2BBZA 3EZQA 3T6PA 2L6AA 2YU0A 2KM6A 2D96A 4F44A 4M9ZA 4EWIA 3MOPG 4O9LA 2LWEA 2M5VA 2XV9A 3LQRA 3MOPK 3CL3A 2N80A 4LWDA 4IZAB 4E9MA 1D2ZB 2N00A 2A9IA 2DBGA 2P1HA 4M9SA 3LQQA 4IZ7B 2N97A 2MS7A 3YGSP 1A1ZA 4F42A 1CY5A 1WXPA 2IB1A 2MJMA 2L9MA 2MS8A 1UCPA 2G7RA 2NZ7A 2OF5A 2BBRA 1Z6TA 4UZ0A 2MN4A 1E3YA 3J63A 2HM2Q 2NSNA 1D2ZA 2DO9A 4P4HA 1YGOA 4A2QA 4RHWE 3J6JA 2N1FA 1C15A 4JUPA 4DWNA 2LWDA 2DBHA 3MOPA 2YGSA 4QOBA 1CWWA 2KN6A 2VGQA 2F1SA 2YQFA 4N1JA 3EZQB 2DBDA 2DBFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RHW A;  1A1W A;  2MB9 A;  1E41 A;  4O9F A;  4I16 A;  4ZBW A;  2GF5 A;  3QF2 A;  4JQW A;  4NQK A;  4N1L A;  2MPC A;  1DGN A;  4M9X A;  2A5Y B;  4FH0 A;  2N83 A;  1PN5 A;  2NAQ A;  1WMG A;  1DDF A;  4N1K A;  1WH4 A;  3YGS C;  4IZ5 E;  4A2W A;  2LS7 A;  4O6X A;  2B1W A;  4D8O A;  2YVI A;  3CRD A;  1N3K A;  2N7Z A;  2OF5 H;  4P4H I;  1ICH A;  1FAD A;  4O7Q A;  3KAT A;  1NGR A;  2O71 A;  2BBZ A;  3EZQ A;  3T6P A;  2L6A A;  2YU0 A;  2KM6 A;  2D96 A;  4F44 A;  4M9Z A;  4EWI A;  3MOP G;  4O9L A;  2LWE A;  2M5V A;  3LQR A;  3MOP K;  3CL3 A;  2N80 A;  4LWD A;  4IZA B;  4E9M A;  1D2Z B;  2N00 A;  2A9I A;  2DBG A;  2P1H A;  4M9S A;  3LQQ A;  4IZ7 B;  2N97 A;  2MS7 A;  3YGS P;  1A1Z A;  4F42 A;  1CY5 A;  1WXP A;  2IB1 A;  2L9M A;  2MS8 A;  1UCP A;  2G7R A;  2NZ7 A;  2OF5 A;  2BBR A;  1Z6T A;  4UZ0 A;  2MN4 A;  1E3Y A;  3J63 A;  2HM2 Q;  2NSN A;  1D2Z A;  2DO9 A;  4P4H A;  1YGO A;  4A2Q A;  4RHW E;  3J6J A;  2N1F A;  1C15 A;  4JUP A;  4DWN A;  2LWD A;  2DBH A;  3MOP A;  2YGS A;  4QOB A;  1CWW A;  2KN6 A;  2VGQ A;  2F1S A;  2YQF A;  4N1J A;  3EZQ B;  2DBD A;  2DBF A; 
#chains in the Genus database with same CATH topology
 4RHW A;  1A1W A;  2MB9 A;  1E41 A;  4O9F A;  4I16 A;  4ZBW A;  2GF5 A;  3QF2 A;  4JQW A;  4NQK A;  4N1L A;  2MPC A;  1DGN A;  4M9X A;  2A5Y B;  4FH0 A;  2N83 A;  1PN5 A;  2NAQ A;  1WMG A;  1DDF A;  4N1K A;  1WH4 A;  3YGS C;  4IZ5 E;  4A2W A;  2LS7 A;  4O6X A;  2B1W A;  4D8O A;  2YVI A;  3CRD A;  1N3K A;  2N7Z A;  2OF5 H;  4P4H I;  1ICH A;  1FAD A;  4O7Q A;  3KAT A;  1NGR A;  2O71 A;  2BBZ A;  3EZQ A;  3T6P A;  2L6A A;  2YU0 A;  2KM6 A;  2D96 A;  4F44 A;  4M9Z A;  4EWI A;  3MOP G;  4O9L A;  2LWE A;  2M5V A;  2XV9 A;  3LQR A;  3MOP K;  3CL3 A;  2N80 A;  4LWD A;  4IZA B;  4E9M A;  1D2Z B;  2N00 A;  2A9I A;  2DBG A;  2P1H A;  4M9S A;  3LQQ A;  4IZ7 B;  2N97 A;  2MS7 A;  3YGS P;  1A1Z A;  4F42 A;  1CY5 A;  1WXP A;  2IB1 A;  2MJM A;  2L9M A;  2MS8 A;  1UCP A;  2G7R A;  2NZ7 A;  2OF5 A;  2BBR A;  1Z6T A;  4UZ0 A;  2MN4 A;  1E3Y A;  3J63 A;  2HM2 Q;  2NSN A;  1D2Z A;  2DO9 A;  4P4H A;  1YGO A;  4A2Q A;  4RHW E;  3J6J A;  2N1F A;  1C15 A;  4JUP A;  4DWN A;  2LWD A;  2DBH A;  3MOP A;  2YGS A;  4QOB A;  1CWW A;  2KN6 A;  2VGQ A;  2F1S A;  2YQF A;  4N1J A;  3EZQ B;  2DBD A;  2DBF A; 
#chains in the Genus database with same CATH homology
 4RHW A;  1A1W A;  2MB9 A;  1E41 A;  4O9F A;  4I16 A;  4ZBW A;  2GF5 A;  3QF2 A;  4JQW A;  4NQK A;  4N1L A;  2MPC A;  1DGN A;  4M9X A;  2A5Y B;  4FH0 A;  2N83 A;  1PN5 A;  2NAQ A;  1WMG A;  1DDF A;  4N1K A;  1WH4 A;  3YGS C;  4IZ5 E;  4A2W A;  2LS7 A;  4O6X A;  2B1W A;  4D8O A;  2YVI A;  3CRD A;  1N3K A;  2N7Z A;  2OF5 H;  4P4H I;  1ICH A;  1FAD A;  4O7Q A;  3KAT A;  1NGR A;  2O71 A;  2BBZ A;  3EZQ A;  3T6P A;  2L6A A;  2YU0 A;  2KM6 A;  2D96 A;  4F44 A;  4M9Z A;  4EWI A;  3MOP G;  4O9L A;  2LWE A;  2M5V A;  2XV9 A;  3LQR A;  3MOP K;  3CL3 A;  2N80 A;  4LWD A;  4IZA B;  4E9M A;  1D2Z B;  2N00 A;  2A9I A;  2DBG A;  2P1H A;  4M9S A;  3LQQ A;  4IZ7 B;  2N97 A;  2MS7 A;  3YGS P;  1A1Z A;  4F42 A;  1CY5 A;  1WXP A;  2IB1 A;  2MJM A;  2L9M A;  2MS8 A;  1UCP A;  2G7R A;  2NZ7 A;  2OF5 A;  2BBR A;  1Z6T A;  4UZ0 A;  2MN4 A;  1E3Y A;  3J63 A;  2HM2 Q;  2NSN A;  1D2Z A;  2DO9 A;  4P4H A;  1YGO A;  4A2Q A;  4RHW E;  3J6J A;  2N1F A;  1C15 A;  4JUP A;  4DWN A;  2LWD A;  2DBH A;  3MOP A;  2YGS A;  4QOB A;  1CWW A;  2KN6 A;  2VGQ A;  2F1S A;  2YQF A;  4N1J A;  3EZQ B;  2DBD A;  2DBF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...