3L50A

The crystal structure of human glia maturation factor, gamma (gmfg)
Total Genus 35
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
136
structure length
136
Chain Sequence
SMVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKMELPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTEAWLQEKLSF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hormone
molecule keywords Glia maturation factor gamma
publication title The crystal structure of human Glia Maturation Factor, Gamma (GMFG)
rcsb
source organism Homo sapiens
total genus 35
structure length 136
sequence length 136
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00241 Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.20.10 Alpha Beta 3-Layer(aba) Sandwich Severin Severin 3l50A00
2FH2A 1T3YA 3FFKA 1SVRA 2LXXA 4Z94G 1KCQA 1CFYA 4BEX1 1T2LA 3FG7A 4CBXG 2XFAA 3EG9B 1NM1G 5KYUA 4CBWG 1T3XA 1VFQA 2LJ8A 2NUPB 2HD7A 1WFSA 3EH2A 5IVUA 3L50A 1NLVG 1F7SA 4PKGG 4KEFA 5FAEA 2VACA 1NMDG 1SVQA 2XF1A 2D8BA 1UDMA 2FH1A 1JHWA 1AK7A 2VILA 1ESVS 2L72A 3A5LS 1C0GS 1NPHA 2KVKA 2NUTB 3Q2BA 1QPVA 1M2VB 3EH1A 5KYXB 5KYNA 1VKKA 3A5NS 4PKIG 3A5MS 4JD2H 1HQZ1 3EFOA 1P8XA 4CBUG 3CJBG 1TVJA 1PD0A 5KYWB 4KEEA 1WM4A 1C0FS 3EGXB 2QTVA 5FAFA 1T44G 1YVNG 1DEJS 4PKHB 3EGDB 3EG9A 1M2OA 3TU5B 2NUPA 5L6WC 5KYYB 1SVYA 1D0NA 1J72A 2FH4A 2MP4A 5A1MA 1EQYS 1WNJA 1COFA 1Q8XA 5HVKD 3A5OS 4KEDA 2MV2A 1PCXA 1Q8GA 5KYUB 1MDUA 3CI5G 3FG6A 2FGHA 1V6FA 3CJCG 2NUTA 1H1VG 1TMWA 1M4JA 5DD2A 1M2VA 5KYXA 1CNUA 2LLFA 2MOTA 2FF3A 2VIKA 1YAGG 1PD1A 5HVKB 2FF6G 1AHQA 1AK6A 4S10C 5KYWA 1D4XG 3FFNA 3EGXA 3CIPG 3EGDA 3EFOB 1RGIG 3DAWB 1P8ZG 1X67A 2W0IA 4LIZA 2FH3A 5KYYA 2I2QA
chains in the Genus database with same CATH superfamily
2FH2A 1T3YA 3FFKA 1SVRA 2LXXA 4Z94G 1KCQA 1CFYA 4BEX1 1T2LA 3FG7A 4CBXG 2XFAA 3EG9B 1NM1G 5KYUA 4CBWG 1T3XA 1VFQA 2LJ8A 2NUPB 2HD7A 1WFSA 3EH2A 5IVUA 3L50A 1NLVG 1F7SA 4PKGG 4KEFA 5FAEA 2VACA 1NMDG 1SVQA 2XF1A 2D8BA 1UDMA 2FH1A 1JHWA 1AK7A 2VILA 1ESVS 2L72A 3A5LS 3DA7A 1C0GS 1NPHA 2KVKA 2NUTB 3Q2BA 1QPVA 1M2VB 3EH1A 5KYXB 5KYNA 1VKKA 3A5NS 4PKIG 3A5MS 4JD2H 1HQZ1 3EFOA 1P8XA 4CBUG 3CJBG 1TVJA 1PD0A 5KYWB 4KEEA 1WM4A 1C0FS 3EGXB 2QTVA 5FAFA 1T44G 1YVNG 1DEJS 4PKHB 3EGDB 3EG9A 1M2OA 3TU5B 2NUPA 5L6WC 5KYYB 1SVYA 1D0NA 1J72A 2FH4A 2MP4A 5A1MA 1EQYS 1WNJA 1COFA 1Q8XA 5HVKD 3A5OS 4KEDA 2MV2A 1PCXA 1Q8GA 5KYUB 1MDUA 3CI5G 3FG6A 2FGHA 1V6FA 3CJCG 2NUTA 1H1VG 1TMWA 1M4JA 5DD2A 1M2VA 5KYXA 1CNUA 2LLFA 2MOTA 2FF3A 2VIKA 1YAGG 1PD1A 5HVKB 2FF6G 1AHQA 1AK6A 4S10C 5KYWA 1D4XG 3FFNA 3EGXA 3CIPG 3EGDA 3EFOB 1RGIG 3DAWB 1P8ZG 1X67A 2W0IA 4LIZA 2FH3A 5KYYA 2I2QA
chains in the Genus database with same CATH topology
2FH2A 1T3YA 3FFKA 1SVRA 2LXXA 4Z94G 1KCQA 1CFYA 4BEX1 1T2LA 3FG7A 4CBXG 2XFAA 3EG9B 1NM1G 5KYUA 4CBWG 1T3XA 1VFQA 2LJ8A 2NUPB 2HD7A 1WFSA 3EH2A 5IVUA 3L50A 1NLVG 1F7SA 4PKGG 4KEFA 5FAEA 2VACA 1NMDG 1SVQA 2XF1A 2D8BA 1UDMA 2FH1A 1JHWA 1AK7A 2VILA 1ESVS 2L72A 3A5LS 3DA7A 1C0GS 1NPHA 2KVKA 2NUTB 3Q2BA 1QPVA 1M2VB 3EH1A 5KYXB 5KYNA 1VKKA 3A5NS 4PKIG 3A5MS 4JD2H 1HQZ1 3EFOA 1P8XA 4CBUG 3CJBG 1TVJA 1PD0A 5KYWB 4KEEA 1WM4A 1C0FS 3EGXB 2QTVA 5FAFA 1T44G 1YVNG 1DEJS 4PKHB 3EGDB 3EG9A 1M2OA 3TU5B 2NUPA 5L6WC 5KYYB 1SVYA 1D0NA 1J72A 2FH4A 2MP4A 5A1MA 1EQYS 1WNJA 1COFA 1Q8XA 5HVKD 3A5OS 4KEDA 2MV2A 1PCXA 1Q8GA 5KYUB 1MDUA 3CI5G 3FG6A 2FGHA 1V6FA 3CJCG 2NUTA 1H1VG 1TMWA 1M4JA 5DD2A 1M2VA 5KYXA 1CNUA 2LLFA 2MOTA 2FF3A 2VIKA 1YAGG 1PD1A 5HVKB 2FF6G 1AHQA 1AK6A 4S10C 5KYWA 1D4XG 3FFNA 3EGXA 3CIPG 3EGDA 3EFOB 1RGIG 3DAWB 1P8ZG 1X67A 2W0IA 4LIZA 2FH3A 5KYYA 2I2QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FH2 A;  1T3Y A;  3FFK A;  1SVR A;  2LXX A;  4Z94 G;  1KCQ A;  1CFY A;  4BEX 1;  1T2L A;  3FG7 A;  4CBX G;  2XFA A;  3EG9 B;  1NM1 G;  5KYU A;  4CBW G;  1T3X A;  1VFQ A;  2LJ8 A;  2NUP B;  2HD7 A;  1WFS A;  3EH2 A;  5IVU A;  3L50 A;  1NLV G;  1F7S A;  4PKG G;  4KEF A;  5FAE A;  2VAC A;  1NMD G;  1SVQ A;  2XF1 A;  2D8B A;  1UDM A;  2FH1 A;  1JHW A;  1AK7 A;  2VIL A;  1ESV S;  2L72 A;  3A5L S;  1C0G S;  1NPH A;  2KVK A;  2NUT B;  3Q2B A;  1QPV A;  1M2V B;  3EH1 A;  5KYX B;  5KYN A;  1VKK A;  3A5N S;  4PKI G;  3A5M S;  4JD2 H;  1HQZ 1;  3EFO A;  1P8X A;  4CBU G;  3CJB G;  1TVJ A;  1PD0 A;  5KYW B;  4KEE A;  1WM4 A;  1C0F S;  3EGX B;  2QTV A;  5FAF A;  1T44 G;  1YVN G;  1DEJ S;  4PKH B;  3EGD B;  3EG9 A;  1M2O A;  3TU5 B;  2NUP A;  5L6W C;  5KYY B;  1SVY A;  1D0N A;  1J72 A;  2FH4 A;  2MP4 A;  5A1M A;  1EQY S;  1WNJ A;  1COF A;  1Q8X A;  5HVK D;  3A5O S;  4KED A;  2MV2 A;  1PCX A;  1Q8G A;  5KYU B;  1MDU A;  3CI5 G;  3FG6 A;  2FGH A;  1V6F A;  3CJC G;  2NUT A;  1H1V G;  1TMW A;  1M4J A;  5DD2 A;  1M2V A;  5KYX A;  1CNU A;  2LLF A;  2MOT A;  2FF3 A;  2VIK A;  1YAG G;  1PD1 A;  5HVK B;  2FF6 G;  1AHQ A;  1AK6 A;  4S10 C;  5KYW A;  1D4X G;  3FFN A;  3EGX A;  3CIP G;  3EGD A;  3EFO B;  1RGI G;  3DAW B;  1P8Z G;  1X67 A;  2W0I A;  4LIZ A;  2FH3 A;  5KYY A;  2I2Q A; 
#chains in the Genus database with same CATH topology
 2FH2 A;  1T3Y A;  3FFK A;  1SVR A;  2LXX A;  4Z94 G;  1KCQ A;  1CFY A;  4BEX 1;  1T2L A;  3FG7 A;  4CBX G;  2XFA A;  3EG9 B;  1NM1 G;  5KYU A;  4CBW G;  1T3X A;  1VFQ A;  2LJ8 A;  2NUP B;  2HD7 A;  1WFS A;  3EH2 A;  5IVU A;  3L50 A;  1NLV G;  1F7S A;  4PKG G;  4KEF A;  5FAE A;  2VAC A;  1NMD G;  1SVQ A;  2XF1 A;  2D8B A;  1UDM A;  2FH1 A;  1JHW A;  1AK7 A;  2VIL A;  1ESV S;  2L72 A;  3A5L S;  3DA7 A;  1C0G S;  1NPH A;  2KVK A;  2NUT B;  3Q2B A;  1QPV A;  1M2V B;  3EH1 A;  5KYX B;  5KYN A;  1VKK A;  3A5N S;  4PKI G;  3A5M S;  4JD2 H;  1HQZ 1;  3EFO A;  1P8X A;  4CBU G;  3CJB G;  1TVJ A;  1PD0 A;  5KYW B;  4KEE A;  1WM4 A;  1C0F S;  3EGX B;  2QTV A;  5FAF A;  1T44 G;  1YVN G;  1DEJ S;  4PKH B;  3EGD B;  3EG9 A;  1M2O A;  3TU5 B;  2NUP A;  5L6W C;  5KYY B;  1SVY A;  1D0N A;  1J72 A;  2FH4 A;  2MP4 A;  5A1M A;  1EQY S;  1WNJ A;  1COF A;  1Q8X A;  5HVK D;  3A5O S;  4KED A;  2MV2 A;  1PCX A;  1Q8G A;  5KYU B;  1MDU A;  3CI5 G;  3FG6 A;  2FGH A;  1V6F A;  3CJC G;  2NUT A;  1H1V G;  1TMW A;  1M4J A;  5DD2 A;  1M2V A;  5KYX A;  1CNU A;  2LLF A;  2MOT A;  2FF3 A;  2VIK A;  1YAG G;  1PD1 A;  5HVK B;  2FF6 G;  1AHQ A;  1AK6 A;  4S10 C;  5KYW A;  1D4X G;  3FFN A;  3EGX A;  3CIP G;  3EGD A;  3EFO B;  1RGI G;  3DAW B;  1P8Z G;  1X67 A;  2W0I A;  4LIZ A;  2FH3 A;  5KYY A;  2I2Q A; 
#chains in the Genus database with same CATH homology
 2FH2 A;  1T3Y A;  3FFK A;  1SVR A;  2LXX A;  4Z94 G;  1KCQ A;  1CFY A;  4BEX 1;  1T2L A;  3FG7 A;  4CBX G;  2XFA A;  3EG9 B;  1NM1 G;  5KYU A;  4CBW G;  1T3X A;  1VFQ A;  2LJ8 A;  2NUP B;  2HD7 A;  1WFS A;  3EH2 A;  5IVU A;  3L50 A;  1NLV G;  1F7S A;  4PKG G;  4KEF A;  5FAE A;  2VAC A;  1NMD G;  1SVQ A;  2XF1 A;  2D8B A;  1UDM A;  2FH1 A;  1JHW A;  1AK7 A;  2VIL A;  1ESV S;  2L72 A;  3A5L S;  3DA7 A;  1C0G S;  1NPH A;  2KVK A;  2NUT B;  3Q2B A;  1QPV A;  1M2V B;  3EH1 A;  5KYX B;  5KYN A;  1VKK A;  3A5N S;  4PKI G;  3A5M S;  4JD2 H;  1HQZ 1;  3EFO A;  1P8X A;  4CBU G;  3CJB G;  1TVJ A;  1PD0 A;  5KYW B;  4KEE A;  1WM4 A;  1C0F S;  3EGX B;  2QTV A;  5FAF A;  1T44 G;  1YVN G;  1DEJ S;  4PKH B;  3EGD B;  3EG9 A;  1M2O A;  3TU5 B;  2NUP A;  5L6W C;  5KYY B;  1SVY A;  1D0N A;  1J72 A;  2FH4 A;  2MP4 A;  5A1M A;  1EQY S;  1WNJ A;  1COF A;  1Q8X A;  5HVK D;  3A5O S;  4KED A;  2MV2 A;  1PCX A;  1Q8G A;  5KYU B;  1MDU A;  3CI5 G;  3FG6 A;  2FGH A;  1V6F A;  3CJC G;  2NUT A;  1H1V G;  1TMW A;  1M4J A;  5DD2 A;  1M2V A;  5KYX A;  1CNU A;  2LLF A;  2MOT A;  2FF3 A;  2VIK A;  1YAG G;  1PD1 A;  5HVK B;  2FF6 G;  1AHQ A;  1AK6 A;  4S10 C;  5KYW A;  1D4X G;  3FFN A;  3EGX A;  3CIP G;  3EGD A;  3EFO B;  1RGI G;  3DAW B;  1P8Z G;  1X67 A;  2W0I A;  4LIZ A;  2FH3 A;  5KYY A;  2I2Q A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...