3LLLA

Crystal structure of mouse pacsin2 f-bar domain
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
287
structure length
287
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCGDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWIAVMSEAERVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKTIYRELEQSIKAADAVEDLRWFRANHGPGMAMNWPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
publication title A hinge in the distal end of the PACSIN 2 F-BAR domain may contribute to membrane-curvature sensing.
pubmed doi rcsb
source organism Mus musculus
total genus 105
structure length 287
sequence length 287
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3lllA01
2EFKA 1I49A 3LLLA 2EFLA 4NQIA 1Y2OA 1I4TA 2C08A 2ELBA 3Q84A 1X04A 3QE6A 1WDZA 2RAKA 3ACOA 2D4CA 2V0OA 2Z0VA 3QNIA 1X03A 1ZWWA 4H8SA 4ATMA 2Z0NA 4AVMA 2D1LA 1I4DA 2Z0OA 5C5BB 4BNEA 4WPEA 3I2WA 4DYLA 2RAIA 2RAJA 3G9GA 3OK8A 4DCNC 4I1QA 3SYVA 2X3WA 3SOGA 3PLTA 4FZSA 4WPCA 3ABHA 2X3VA 1URUA 2Q12A 2YKTA 3HAJA 1I4LA 3CAZA 3M3WA 3DYTA 2X3XA 3Q0KA 2FICA 3HAIA 3QWEA 5C5BA 3HAHA 2Q13A 4AKVA 4NSWA
chains in the Genus database with same CATH superfamily
3L3OM 1I4TA 2YL5A 1OA0A 3ACOA 4F01A 2Z0VA 2YI9A 3BUBA 4PO2A 4R5GA 3D52A 3D50A 3QNJA 4AZIA 1TQSA 4JWDA 2FICA 2YIBA 2MI7A 1TQWA 4IWPA 3O3NB 1SU7A 3O3MB 1X04A 2D4CA 4IM3A 4D8JA 1DKZA 3SYVA 2OW6A 4EZPA 3CKDA 3VEBA 2QFFA 2EFLA 2LM0A 1Y2OA 3T4AG 1X03A 1MJGA 4FM3A 1E1DA 2D1LA 2O0I1 2PY6A 2RAIA 4DCNC 3BVVA 2F7PA 1ZYLA 4EZVA 1U00A 4EZSA 4AKVA 4AZCA 4AZ6A 3VEAA 2EFKA 3CV5A 1HXKA 3KAWA 2C08A 4JLCA 2V0OA 3B53X 2QKWA 3A98A 4AVMA 2YI8A 2ND1A 5C5BB 1YWMA 3O3OB 2YLLA 4HYBA 3T47A 2KHOA 4IWOA 1GNTA 2GAFD 4JWIA 2PMRA 3BUDA 1JQKA 3OK8A 3B51X 3EJQA 2ZXQA 4WPCA 4AZHA 2JNKA 4H6IA 5C5BA 2ELBA 3OWGA 1ZWWA 3I01A 3D51A 4EZRA 4H6HA 3GI7A 4R5LA 3DPPA 2X3VA 4B9QA 3F7WA 2X3XA 4E81A 3D4ZA 1DKYA 3I04A 3CZNA 5E84A 4AZBA 4JNFA 3EJPA 4ATMA 2YL6A 3I39X 2ND0A 5TKYA 4AZCB 1OAOA 3SOGA 3UITA 3BVTA 2F7QA 4UDXX 3HAJA 1I4LA 1W9MA 3DX3A 2ALWA 1R34A 3HAIA 3BUIA 3KAVA 3DPQA 4G6QA 4NQIA 4H8SA 3BVXA 1R5EA 3D4YA 1I4DA 2Z8YA 3G9GA 2OZNB 3DDFA 4E3CA 4KIKA 4HY9A 4EZTA 4IM0A 4NPHA 2Q13A 3T46A 3RV1A 4JWEA 1E2UA 4R5KA 3DX2A 2Z0NA 1HWWA 1E9VA 3CVRA 2EX3B 2YKTA 3QWEA 3HAHA 3B52X 4IW0A 2YL9A 4EZQA 2NCZA 1WDZA 2X5CA 3QNIA 3EJUA 2Z0OA 4EZUA 3CAZA 3ERCC 3Q0KA 3RPMA 1PS3A 3LLLA 3QE6A 3L3PA 2RAKA 3BVUA 2F7OA 3ER9B 3C7NA 3OHXM 4BNEA 4FZOA 4F00A 1TQTA 4FZPA 4HR1A 1SU6A 5FIGA 3ABHA 2F18A 2WYHA 4JWCA 2WINM 2QXLA 2LXYA 4KIKB 1R33A 3BLBA 4R5JA 4AZ5A 2FYVA 4EZXA 3DX1A 3EJTA 2F7RA 4WPEA 3LVTA 3DDGA 3BUQA 2RT6A 4FZSA 4EZWA 3DX4A 1LQ7A 4JL9A 4M0MA 3D2FA 2GF4A 3T49A 5FLEX 2JNSA 2OW7A 1QWUA 1SUFA 4AZGA 2F1AA 3PLTA 4AZ7A 5KBPA 3DPOA 4R5IA 3VKHA 2YLAA 3BUPA 2OBMA 4NSWA 1I49A 1OA1A 3ZEDA 3I2WA 4JN4A 1QWNA 3EJSA 4EZZA 2YL8A 1DKXA 1SU8A 2Q12A 1UPXA 3FD9A 3M3WA 3DYTA 2OO2A 4HR1B 2WYIA 1GNLA 3Q84A 2YIAA 2YIVX 4JNEA 3KDRA 3LMFA 4IM2A 2RAJA 3ER8C 2N3KA 2EWFA 3RV0A 4UDYX 1O7DC 4EZYA 3EJRA 4EZOA 2F1BA 1GN9A 3BVWA 1TQVA 1O7DB 3QA8A 3T48A 1QX1A 4DYLA 1TQUA 4I1QA 2X3WA 1HTYA 4EZNA 1URUA 3CZSA 4IWQA 2GA9D 3DX0A 3D2EA 2OBLA
chains in the Genus database with same CATH topology
2EFKA 1I49A 3LLLA 2EFLA 4NQIA 1Y2OA 1I4TA 2C08A 2ELBA 3Q84A 1X04A 3QE6A 1WDZA 2RAKA 3ACOA 2D4CA 2V0OA 2Z0VA 3QNIA 1X03A 1ZWWA 4H8SA 4ATMA 2Z0NA 4AVMA 2D1LA 1I4DA 2Z0OA 5C5BB 4BNEA 4WPEA 3I2WA 4DYLA 2RAIA 2RAJA 3G9GA 3OK8A 4DCNC 4I1QA 3SYVA 2X3WA 3SOGA 3PLTA 4FZSA 4WPCA 3ABHA 2X3VA 1URUA 2Q12A 2YKTA 3HAJA 1I4LA 3CAZA 3M3WA 3DYTA 2X3XA 3Q0KA 2FICA 3HAIA 3QWEA 5C5BA 3HAHA 2Q13A 4AKVA 4NSWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EFK A;  1I49 A;  3LLL A;  2EFL A;  4NQI A;  1Y2O A;  1I4T A;  2C08 A;  2ELB A;  3Q84 A;  1X04 A;  3QE6 A;  1WDZ A;  2RAK A;  3ACO A;  2D4C A;  2V0O A;  2Z0V A;  3QNI A;  1X03 A;  1ZWW A;  4H8S A;  4ATM A;  2Z0N A;  4AVM A;  2D1L A;  1I4D A;  2Z0O A;  5C5B B;  4BNE A;  4WPE A;  3I2W A;  4DYL A;  2RAI A;  2RAJ A;  3G9G A;  3OK8 A;  4DCN C;  4I1Q A;  3SYV A;  2X3W A;  3SOG A;  3PLT A;  4FZS A;  4WPC A;  3ABH A;  2X3V A;  1URU A;  2Q12 A;  2YKT A;  3HAJ A;  1I4L A;  3CAZ A;  3M3W A;  3DYT A;  2X3X A;  3Q0K A;  2FIC A;  3HAI A;  3QWE A;  5C5B A;  3HAH A;  2Q13 A;  4AKV A;  4NSW A; 
#chains in the Genus database with same CATH topology
 3L3O M;  1I4T A;  2YL5 A;  1OA0 A;  3ACO A;  4F01 A;  2Z0V A;  2YI9 A;  3BUB A;  4PO2 A;  4R5G A;  3D52 A;  3D50 A;  3QNJ A;  4AZI A;  1TQS A;  4JWD A;  2FIC A;  2YIB A;  2MI7 A;  1TQW A;  4IWP A;  3O3N B;  1SU7 A;  3O3M B;  1X04 A;  2D4C A;  4IM3 A;  4D8J A;  1DKZ A;  3SYV A;  2OW6 A;  4EZP A;  3CKD A;  3VEB A;  2QFF A;  2EFL A;  2LM0 A;  1Y2O A;  3T4A G;  1X03 A;  1MJG A;  4FM3 A;  1E1D A;  2D1L A;  2O0I 1;  2PY6 A;  2RAI A;  4DCN C;  3BVV A;  2F7P A;  1ZYL A;  4EZV A;  1U00 A;  4EZS A;  4AKV A;  4AZC A;  4AZ6 A;  3VEA A;  2EFK A;  3CV5 A;  1HXK A;  3KAW A;  2C08 A;  4JLC A;  2V0O A;  3B53 X;  2QKW A;  3A98 A;  4AVM A;  2YI8 A;  2ND1 A;  5C5B B;  1YWM A;  3O3O B;  2YLL A;  4HYB A;  3T47 A;  2KHO A;  4IWO A;  1GNT A;  2GAF D;  4JWI A;  2PMR A;  3BUD A;  1JQK A;  3OK8 A;  3B51 X;  3EJQ A;  2ZXQ A;  4WPC A;  4AZH A;  2JNK A;  4H6I A;  5C5B A;  2ELB A;  3OWG A;  1ZWW A;  3I01 A;  3D51 A;  4EZR A;  4H6H A;  3GI7 A;  4R5L A;  3DPP A;  2X3V A;  4B9Q A;  3F7W A;  2X3X A;  4E81 A;  3D4Z A;  1DKY A;  3I04 A;  3CZN A;  5E84 A;  4AZB A;  4JNF A;  3EJP A;  4ATM A;  2YL6 A;  3I39 X;  2ND0 A;  5TKY A;  4AZC B;  1OAO A;  3SOG A;  3UIT A;  3BVT A;  2F7Q A;  4UDX X;  3HAJ A;  1I4L A;  1W9M A;  3DX3 A;  2ALW A;  1R34 A;  3HAI A;  3BUI A;  3KAV A;  3DPQ A;  4G6Q A;  4NQI A;  4H8S A;  3BVX A;  1R5E A;  3D4Y A;  1I4D A;  2Z8Y A;  3G9G A;  2OZN B;  3DDF A;  4E3C A;  4KIK A;  4HY9 A;  4EZT A;  4IM0 A;  4NPH A;  2Q13 A;  3T46 A;  3RV1 A;  4JWE A;  1E2U A;  4R5K A;  3DX2 A;  2Z0N A;  1HWW A;  1E9V A;  3CVR A;  2EX3 B;  2YKT A;  3QWE A;  3HAH A;  3B52 X;  4IW0 A;  2YL9 A;  4EZQ A;  2NCZ A;  1WDZ A;  2X5C A;  3QNI A;  3EJU A;  2Z0O A;  4EZU A;  3CAZ A;  3ERC C;  3Q0K A;  3RPM A;  1PS3 A;  3LLL A;  3QE6 A;  3L3P A;  2RAK A;  3BVU A;  2F7O A;  3ER9 B;  3C7N A;  3OHX M;  4BNE A;  4FZO A;  4F00 A;  1TQT A;  4FZP A;  4HR1 A;  1SU6 A;  5FIG A;  3ABH A;  2F18 A;  2WYH A;  4JWC A;  2WIN M;  2QXL A;  2LXY A;  4KIK B;  1R33 A;  3BLB A;  4R5J A;  4AZ5 A;  2FYV A;  4EZX A;  3DX1 A;  3EJT A;  2F7R A;  4WPE A;  3LVT A;  3DDG A;  3BUQ A;  2RT6 A;  4FZS A;  4EZW A;  3DX4 A;  1LQ7 A;  4JL9 A;  4M0M A;  3D2F A;  2GF4 A;  3T49 A;  5FLE X;  2JNS A;  2OW7 A;  1QWU A;  1SUF A;  4AZG A;  2F1A A;  3PLT A;  4AZ7 A;  5KBP A;  3DPO A;  4R5I A;  3VKH A;  2YLA A;  3BUP A;  2OBM A;  4NSW A;  1I49 A;  1OA1 A;  3ZED A;  3I2W A;  4JN4 A;  1QWN A;  3EJS A;  4EZZ A;  2YL8 A;  1DKX A;  1SU8 A;  2Q12 A;  1UPX A;  3FD9 A;  3M3W A;  3DYT A;  2OO2 A;  4HR1 B;  2WYI A;  1GNL A;  3Q84 A;  2YIA A;  2YIV X;  4JNE A;  3KDR A;  3LMF A;  4IM2 A;  2RAJ A;  3ER8 C;  2N3K A;  2EWF A;  3RV0 A;  4UDY X;  1O7D C;  4EZY A;  3EJR A;  4EZO A;  2F1B A;  1GN9 A;  3BVW A;  1TQV A;  1O7D B;  3QA8 A;  3T48 A;  1QX1 A;  4DYL A;  1TQU A;  4I1Q A;  2X3W A;  1HTY A;  4EZN A;  1URU A;  3CZS A;  4IWQ A;  2GA9 D;  3DX0 A;  3D2E A;  2OBL A; 
#chains in the Genus database with same CATH homology
 2EFK A;  1I49 A;  3LLL A;  2EFL A;  4NQI A;  1Y2O A;  1I4T A;  2C08 A;  2ELB A;  3Q84 A;  1X04 A;  3QE6 A;  1WDZ A;  2RAK A;  3ACO A;  2D4C A;  2V0O A;  2Z0V A;  3QNI A;  1X03 A;  1ZWW A;  4H8S A;  4ATM A;  2Z0N A;  4AVM A;  2D1L A;  1I4D A;  2Z0O A;  5C5B B;  4BNE A;  4WPE A;  3I2W A;  4DYL A;  2RAI A;  2RAJ A;  3G9G A;  3OK8 A;  4DCN C;  4I1Q A;  3SYV A;  2X3W A;  3SOG A;  3PLT A;  4FZS A;  4WPC A;  3ABH A;  2X3V A;  1URU A;  2Q12 A;  2YKT A;  3HAJ A;  1I4L A;  3CAZ A;  3M3W A;  3DYT A;  2X3X A;  3Q0K A;  2FIC A;  3HAI A;  3QWE A;  5C5B A;  3HAH A;  2Q13 A;  4AKV A;  4NSW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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