3LMOA

Crystal structure of specialized acyl carrier protein (rpa2022) from rhodopseudomonas palustris, northeast structural genomics consortium target rpr324
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
94
structure length
94
Chain Sequence
TSTFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAARIDELVAAKGALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Specialized acyl carrier protein
publication title Structure of a specialized acyl carrier protein essential for lipid A biosynthesis with very long-chain fatty acids in open and closed conformations.
pubmed doi rcsb
source organism Rhodopseudomonas palustris
total genus 30
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2010-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00550 PP-binding Phosphopantetheine attachment site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.10 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A ACP-like 3lmoA00
2L4BA 2KOOA 2JU2A 2AVAA 2EHSA 4MRTC 2LTEA 2LL8A 2FVEA 3GZMA 2FACA 2FQ1A 2N98A 4BPFA 2N50A 2N5HA 2QNWA 2MVUA 2LOLA 4BPHA 2LMLA 2CNRA 5KP8B 2KOSA 2JU1A 2CG5B 2LPKA 2KOPA 2N6ZA 1T8KA 4H2XC 2N5IA 2FHSC 2KGCA 2MR7A 1HY8A 2KGAA 3NY7B 5EJDA 2GDYA 2GDWA 2FADA 4CA3A 2DNWA 2LIWA 3CE7A 4R0MA 1ACPA 2JGPA 1F80D 2FVFA 5HVCA 2FQ0A 2K94A 1L0IA 3RG2A 2MR8A 1AF8A 2GDXA 2KG8A 2K92A 4BPGA 1DNYA 2N6YA 3GZLA 5KP6B 2LIUA 1OR5A 2AFEA 3LMOA 2M5RA 2K0YA 2K93A 2L9FA 2KOQA 2JQ4A 2AFDA 2L0QA 2MF4A 2MVVA 4DG9A 4H2YC 5CZDB 2XZ1C 1L0HA 4HKGA 2MY5A 1HQBA 4PWVB 2KGDA 2PNGA 5HV8A 2K2QA 1KLPA 2L22A 2CGQA 2CQ8A 2LKIA 3EJEA 3EJBA 2KG9A 2KW2A 4H2WC 2FQ2A 4IZ6A 2X2BA 4NEOA 2AF8A 1DV5A 1VKUA 2KGEA 3EJDA 4PXHB 2KG6A 1NQ4A 2KORA 2KR5A 2ROQA 1X3OA 2VSQA 2EHTA 5KP7B 2FAEA 2KWLA 2MD9A 2XZ0D 2K0XA 2FVAA
chains in the Genus database with same CATH superfamily
2KOOA 2BUOA 3CC2P 2JU2A 2AVAA 1QVFO 5HGMA 3LRYA 3VRLC 2LTEA 1GXHA 1VQPP 2OTLP 2FVEA 2N50A 2M8NA 1VQ4P 4M0IA 1YJ9P 2KOSA 2M8LA 3NTEA 1NJIQ 2JU1A 3P05A 2KODA 1EIAA 2FHSC 3CC7P 2OTJP 4F37A 1Z6MA 2JO0A 1HY8A 3NY7B 2GYKA 2DNWA 1E0HA 2L6EA 2LIWA 3G6EP 3CCJP 3GKLC 1YITP 2DGYA 1L0IA 2GDXA 3CPWO 4QNBA 2AFEA 5I4TG 1YJNP 1JJ2O 3DS1A 2KOQA 2L0QA 2GZEA 4DG9A 2XZ1C 1VQ5P 1W2BO 4XRQA 2LKIA 1ZNVA 1Q81Q 2ERHA 4H2WC 1KD1Q 2AF8A 1VKUA 2KGEA 2JB0A 4U0FA 5KP7B 3G1GA 1VQLP 1AYIA 2L4BA 1M90Q 3U43A 1Q7YQ 1VQ6P 2PEMA 2LL8A 2GZIA 2VLQA 4BPFA 3CCQP 7CEIA 2CNRA 2Z44A 1RO0A 2K5XA 2P9XA 3CCVP 2KOPA 3CCMP 2VLNA 1MZ8A 3DS3A 2MR7A 1VQ7P 2KGAA 1EMVA 1A43A 2GZFA 2PENA 3DS4A 2EG5A 2LF4A 3G0VA 3I55P 2K94A 2PEIA 5HGLA 1A8OA 2JYLA 1ZMBA 2PEOA 1DNYA 2XXMA 3G4SP 2K0YA 2NO8A 5BS2A 1QVGO 3CCSP 3OW2O 5CZDB 3HYBA 1BXIA 1GPJA 3RG6C 4GR2A 2M8PA 4XFXA 1S72P 2PEJA 2PNGA 4U0AA 1VQKP 2K2QA 1YI2P 3EJBA 2KG9A 2Z46A 2KW2A 4IZ6A 2X2BA 3DTJA 4NEOA 1BAJA 1E6JP 3EJDA 2KORA 1X3OA 1KQSO 2FAEA 2KWLA 2XZ0D 2GZJA 2EHSA 1M74A 4U0EA 3E2DA 1GXGA 4COPA 2N98A 3G29A 2N5HA 3DS5A 2MVUA 4BPHA 1K30A 5HGOA 5KP8B 2Z45A 3I56P 3CCUP 1VHNA 1T8KA 1K8AQ 2WPTA 1YIJP 5EJDA 2GDYA 2GDWA 2FADA 3CC4P 4CA3A 5JPAA 2QA4P 1N8RQ 4U0CA 2ONTA 1VQMP 4R0MA 5DCKA 4WYMA 1F80D 2FQ0A 1D1DA 3RG2A 1VQOP 2KG8A 4BPGA 3MGEA 3GZLA 5KP6B 2LIUA 3G1IA 1CEIA 3LMOA 5F2NA 3HZQA 4GR6A 3H47A 3DS0A 2AFDA 3Q20A 3GJNA 4HKGA 3H0DA 2E1MA 5HV8A 3G26A 1KLPA 2PEKA 2CGQA 1FR2A 1UNKA 2PEQA 1IUQA 3B4QA 1Q86Q 1QRJA 1RNIA 4PH1A 2VLPA 1DV5A 2KG6A 2VLOA 2ROQA 2VSQA 1AUMA 1RO2A 2EHTA 4U0BA 4XFZA 2BHVA 1M6EX 1M6NA 2K0DX 1KC8Q 4MRTC 2OARA 1M1KQ 3G21A 3GZMA 2FACA 2FQ1A 1UJZA 2CWOA 2GZGA 1Q82Q 2QNWA 2LOLA 4U0DA 2LMLA 2XT1A 3CMAP 2CG5B 2LPKA 1IMQA 2N6ZA 4H2XC 2N5IA 2KGCA 3DS2A 3CCEP 3B5IA 5F2OA 1K73Q 1IMPA 2QEXP 3DPHA 3M1MA 3CCRP 3CXCO 3CE7A 1ACPA 2JGPA 1YJWP 2FVFA 3CMEP 4XFYA 5HVCA 5F2KA 3CCLP 4XROA 2MR8A 1AF8A 1EOQA 2K92A 2N6YA 5EW5E 4UHPB 1OR5A 3H4EA 3WBHA 2M5RA 2JBGA 2K93A 2L9FA 2JQ4A 2XV6A 2MF4A 2MVVA 1K9MQ 4H2YC 1VQ8P 5BS1A 3G71P 1L0HA 2EFJA 2MY5A 1HQBA 4IPYA 2JYGA 3G28A 4PWVB 2KGDA 4PH0A 3CD6P 2L22A 4COCA 2CQ8A 3EJEA 2FQ2A 1YHQP 5HGNA 2EIAA 4PXHB 4QKOA 1NQ4A 2KR5A 2JAZA 1VQNP 2PY8A 2MD9A 1VQ9P 2K0XA 2FVAA
chains in the Genus database with same CATH topology
2L4BA 2KOOA 2JU2A 2AVAA 2EHSA 4MRTC 2LTEA 2LL8A 2FVEA 3GZMA 2FACA 2FQ1A 2N98A 4BPFA 2N50A 2N5HA 2QNWA 2MVUA 2LOLA 4BPHA 2LMLA 2CNRA 5KP8B 2KOSA 2JU1A 2CG5B 2LPKA 2KOPA 2N6ZA 1T8KA 4H2XC 2N5IA 2FHSC 2KGCA 2MR7A 1HY8A 2KGAA 3NY7B 5EJDA 2GDYA 2GDWA 2FADA 4CA3A 2DNWA 2LIWA 3CE7A 4R0MA 1ACPA 2JGPA 1F80D 2FVFA 5HVCA 2FQ0A 2K94A 1L0IA 3RG2A 2MR8A 1AF8A 2GDXA 2KG8A 2K92A 4BPGA 1DNYA 2N6YA 3GZLA 5KP6B 2LIUA 1OR5A 2AFEA 3LMOA 2M5RA 2K0YA 2K93A 2L9FA 2KOQA 2JQ4A 2AFDA 2L0QA 2MF4A 2MVVA 4DG9A 4H2YC 5CZDB 2XZ1C 1L0HA 4HKGA 2MY5A 1HQBA 4PWVB 2KGDA 2PNGA 5HV8A 2K2QA 1KLPA 2L22A 2CGQA 2CQ8A 2LKIA 3EJEA 3EJBA 2KG9A 2KW2A 4H2WC 2FQ2A 4IZ6A 2X2BA 4NEOA 2AF8A 1DV5A 1VKUA 2KGEA 3EJDA 4PXHB 2KG6A 1NQ4A 2KORA 2KR5A 2ROQA 1X3OA 2VSQA 2EHTA 5KP7B 2FAEA 2KWLA 2MD9A 2XZ0D 2K0XA 2FVAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L4B A;  2KOO A;  2JU2 A;  2AVA A;  2EHS A;  4MRT C;  2LTE A;  2LL8 A;  2FVE A;  3GZM A;  2FAC A;  2FQ1 A;  2N98 A;  4BPF A;  2N50 A;  2N5H A;  2QNW A;  2MVU A;  2LOL A;  4BPH A;  2LML A;  2CNR A;  5KP8 B;  2KOS A;  2JU1 A;  2CG5 B;  2LPK A;  2KOP A;  2N6Z A;  1T8K A;  4H2X C;  2N5I A;  2FHS C;  2KGC A;  2MR7 A;  1HY8 A;  2KGA A;  3NY7 B;  5EJD A;  2GDY A;  2GDW A;  2FAD A;  4CA3 A;  2DNW A;  2LIW A;  3CE7 A;  4R0M A;  1ACP A;  2JGP A;  1F80 D;  2FVF A;  5HVC A;  2FQ0 A;  2K94 A;  1L0I A;  3RG2 A;  2MR8 A;  1AF8 A;  2GDX A;  2KG8 A;  2K92 A;  4BPG A;  1DNY A;  2N6Y A;  3GZL A;  5KP6 B;  2LIU A;  1OR5 A;  2AFE A;  3LMO A;  2M5R A;  2K0Y A;  2K93 A;  2L9F A;  2KOQ A;  2JQ4 A;  2AFD A;  2L0Q A;  2MF4 A;  2MVV A;  4DG9 A;  4H2Y C;  5CZD B;  2XZ1 C;  1L0H A;  4HKG A;  2MY5 A;  1HQB A;  4PWV B;  2KGD A;  2PNG A;  5HV8 A;  2K2Q A;  1KLP A;  2L22 A;  2CGQ A;  2CQ8 A;  2LKI A;  3EJE A;  3EJB A;  2KG9 A;  2KW2 A;  4H2W C;  2FQ2 A;  4IZ6 A;  2X2B A;  4NEO A;  2AF8 A;  1DV5 A;  1VKU A;  2KGE A;  3EJD A;  4PXH B;  2KG6 A;  1NQ4 A;  2KOR A;  2KR5 A;  2ROQ A;  1X3O A;  2VSQ A;  2EHT A;  5KP7 B;  2FAE A;  2KWL A;  2MD9 A;  2XZ0 D;  2K0X A;  2FVA A; 
#chains in the Genus database with same CATH topology
 2KOO A;  2BUO A;  3CC2 P;  2JU2 A;  2AVA A;  1QVF O;  5HGM A;  3LRY A;  3VRL C;  2LTE A;  1GXH A;  1VQP P;  2OTL P;  2FVE A;  2N50 A;  2M8N A;  1VQ4 P;  4M0I A;  1YJ9 P;  2KOS A;  2M8L A;  3NTE A;  1NJI Q;  2JU1 A;  3P05 A;  2KOD A;  1EIA A;  2FHS C;  3CC7 P;  2OTJ P;  4F37 A;  1Z6M A;  2JO0 A;  1HY8 A;  3NY7 B;  2GYK A;  2DNW A;  1E0H A;  2L6E A;  2LIW A;  3G6E P;  3CCJ P;  3GKL C;  1YIT P;  2DGY A;  1L0I A;  2GDX A;  3CPW O;  4QNB A;  2AFE A;  5I4T G;  1YJN P;  1JJ2 O;  3DS1 A;  2KOQ A;  2L0Q A;  2GZE A;  4DG9 A;  2XZ1 C;  1VQ5 P;  1W2B O;  4XRQ A;  2LKI A;  1ZNV A;  1Q81 Q;  2ERH A;  4H2W C;  1KD1 Q;  2AF8 A;  1VKU A;  2KGE A;  2JB0 A;  4U0F A;  5KP7 B;  3G1G A;  1VQL P;  1AYI A;  2L4B A;  1M90 Q;  3U43 A;  1Q7Y Q;  1VQ6 P;  2PEM A;  2LL8 A;  2GZI A;  2VLQ A;  4BPF A;  3CCQ P;  7CEI A;  2CNR A;  2Z44 A;  1RO0 A;  2K5X A;  2P9X A;  3CCV P;  2KOP A;  3CCM P;  2VLN A;  1MZ8 A;  3DS3 A;  2MR7 A;  1VQ7 P;  2KGA A;  1EMV A;  1A43 A;  2GZF A;  2PEN A;  3DS4 A;  2EG5 A;  2LF4 A;  3G0V A;  3I55 P;  2K94 A;  2PEI A;  5HGL A;  1A8O A;  2JYL A;  1ZMB A;  2PEO A;  1DNY A;  2XXM A;  3G4S P;  2K0Y A;  2NO8 A;  5BS2 A;  1QVG O;  3CCS P;  3OW2 O;  5CZD B;  3HYB A;  1BXI A;  1GPJ A;  3RG6 C;  4GR2 A;  2M8P A;  4XFX A;  1S72 P;  2PEJ A;  2PNG A;  4U0A A;  1VQK P;  2K2Q A;  1YI2 P;  3EJB A;  2KG9 A;  2Z46 A;  2KW2 A;  4IZ6 A;  2X2B A;  3DTJ A;  4NEO A;  1BAJ A;  1E6J P;  3EJD A;  2KOR A;  1X3O A;  1KQS O;  2FAE A;  2KWL A;  2XZ0 D;  2GZJ A;  2EHS A;  1M74 A;  4U0E A;  3E2D A;  1GXG A;  4COP A;  2N98 A;  3G29 A;  2N5H A;  3DS5 A;  2MVU A;  4BPH A;  1K30 A;  5HGO A;  5KP8 B;  2Z45 A;  3I56 P;  3CCU P;  1VHN A;  1T8K A;  1K8A Q;  2WPT A;  1YIJ P;  5EJD A;  2GDY A;  2GDW A;  2FAD A;  3CC4 P;  4CA3 A;  5JPA A;  2QA4 P;  1N8R Q;  4U0C A;  2ONT A;  1VQM P;  4R0M A;  5DCK A;  4WYM A;  1F80 D;  2FQ0 A;  1D1D A;  3RG2 A;  1VQO P;  2KG8 A;  4BPG A;  3MGE A;  3GZL A;  5KP6 B;  2LIU A;  3G1I A;  1CEI A;  3LMO A;  5F2N A;  3HZQ A;  4GR6 A;  3H47 A;  3DS0 A;  2AFD A;  3Q20 A;  3GJN A;  4HKG A;  3H0D A;  2E1M A;  5HV8 A;  3G26 A;  1KLP A;  2PEK A;  2CGQ A;  1FR2 A;  1UNK A;  2PEQ A;  1IUQ A;  3B4Q A;  1Q86 Q;  1QRJ A;  1RNI A;  4PH1 A;  2VLP A;  1DV5 A;  2KG6 A;  2VLO A;  2ROQ A;  2VSQ A;  1AUM A;  1RO2 A;  2EHT A;  4U0B A;  4XFZ A;  2BHV A;  1M6E X;  1M6N A;  2K0D X;  1KC8 Q;  4MRT C;  2OAR A;  1M1K Q;  3G21 A;  3GZM A;  2FAC A;  2FQ1 A;  1UJZ A;  2CWO A;  2GZG A;  1Q82 Q;  2QNW A;  2LOL A;  4U0D A;  2LML A;  2XT1 A;  3CMA P;  2CG5 B;  2LPK A;  1IMQ A;  2N6Z A;  4H2X C;  2N5I A;  2KGC A;  3DS2 A;  3CCE P;  3B5I A;  5F2O A;  1K73 Q;  1IMP A;  2QEX P;  3DPH A;  3M1M A;  3CCR P;  3CXC O;  3CE7 A;  1ACP A;  2JGP A;  1YJW P;  2FVF A;  3CME P;  4XFY A;  5HVC A;  5F2K A;  3CCL P;  4XRO A;  2MR8 A;  1AF8 A;  1EOQ A;  2K92 A;  2N6Y A;  5EW5 E;  4UHP B;  1OR5 A;  3H4E A;  3WBH A;  2M5R A;  2JBG A;  2K93 A;  2L9F A;  2JQ4 A;  2XV6 A;  2MF4 A;  2MVV A;  1K9M Q;  4H2Y C;  1VQ8 P;  5BS1 A;  3G71 P;  1L0H A;  2EFJ A;  2MY5 A;  1HQB A;  4IPY A;  2JYG A;  3G28 A;  4PWV B;  2KGD A;  4PH0 A;  3CD6 P;  2L22 A;  4COC A;  2CQ8 A;  3EJE A;  2FQ2 A;  1YHQ P;  5HGN A;  2EIA A;  4PXH B;  4QKO A;  1NQ4 A;  2KR5 A;  2JAZ A;  1VQN P;  2PY8 A;  2MD9 A;  1VQ9 P;  2K0X A;  2FVA A; 
#chains in the Genus database with same CATH homology
 2L4B A;  2KOO A;  2JU2 A;  2AVA A;  2EHS A;  4MRT C;  2LTE A;  2LL8 A;  2FVE A;  3GZM A;  2FAC A;  2FQ1 A;  2N98 A;  4BPF A;  2N50 A;  2N5H A;  2QNW A;  2MVU A;  2LOL A;  4BPH A;  2LML A;  2CNR A;  5KP8 B;  2KOS A;  2JU1 A;  2CG5 B;  2LPK A;  2KOP A;  2N6Z A;  1T8K A;  4H2X C;  2N5I A;  2FHS C;  2KGC A;  2MR7 A;  1HY8 A;  2KGA A;  3NY7 B;  5EJD A;  2GDY A;  2GDW A;  2FAD A;  4CA3 A;  2DNW A;  2LIW A;  3CE7 A;  4R0M A;  1ACP A;  2JGP A;  1F80 D;  2FVF A;  5HVC A;  2FQ0 A;  2K94 A;  1L0I A;  3RG2 A;  2MR8 A;  1AF8 A;  2GDX A;  2KG8 A;  2K92 A;  4BPG A;  1DNY A;  2N6Y A;  3GZL A;  5KP6 B;  2LIU A;  1OR5 A;  2AFE A;  3LMO A;  2M5R A;  2K0Y A;  2K93 A;  2L9F A;  2KOQ A;  2JQ4 A;  2AFD A;  2L0Q A;  2MF4 A;  2MVV A;  4DG9 A;  4H2Y C;  5CZD B;  2XZ1 C;  1L0H A;  4HKG A;  2MY5 A;  1HQB A;  4PWV B;  2KGD A;  2PNG A;  5HV8 A;  2K2Q A;  1KLP A;  2L22 A;  2CGQ A;  2CQ8 A;  2LKI A;  3EJE A;  3EJB A;  2KG9 A;  2KW2 A;  4H2W C;  2FQ2 A;  4IZ6 A;  2X2B A;  4NEO A;  2AF8 A;  1DV5 A;  1VKU A;  2KGE A;  3EJD A;  4PXH B;  2KG6 A;  1NQ4 A;  2KOR A;  2KR5 A;  2ROQ A;  1X3O A;  2VSQ A;  2EHT A;  5KP7 B;  2FAE A;  2KWL A;  2MD9 A;  2XZ0 D;  2K0X A;  2FVA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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