3MAOA

Crystal structure of human methionine-r-sulfoxide reductase b1 (msrb1)
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
105
structure length
105
Chain Sequence
SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPKGKETSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Methionine-R-sulfoxide reductase B1
publication title Crystal Structure of Human Methionine-R-Sulfoxide Reductase B1 (MsrB1)
rcsb
source organism Homo sapiens
total genus 20
structure length 105
sequence length 105
ec nomenclature ec 1.8.4.12: Peptide-methionine (R)-S-oxide reductase.
pdb deposition date 2010-03-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.150.20 Mainly Beta Beta Complex Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A Peptide methionine sulfoxide reductase. 3maoA00
4TZ4C 2KZNA 3HCJA 4V30A 4CI1B 3HCIA 3E0OA 3HCHA 3CEZA 4V2ZA 4CI3B 4V31A 3CXKA 3MAOA 3HCGA 4V2YA 4CI2B 4TZUA 5AMHA 3E0MA 2KV1A 1L1DA 2K8DA 4TZCA 3WX1A 3WX2A
chains in the Genus database with same CATH superfamily
3GA3A 5E3HA 1H6QA 4A2XA 5F9FA 4TZ4C 2RMJA 2KZNA 3ZD6A 3HCJA 1YZ1A 2FU5A 4V30A 5F9HA 4CI1B 3EQTA 3NCUA 1HXRA 3HCIA 1FWQA 4AY2A 2W4RA 1H7YA 3E0OA 2QFDA 3CEZA 3HCHA 4V2ZA 3EBMA 3CXKA 1TXJA 3MAOA 4V31A 4CI3B 3HCGA 2KWBA 2HR9A 4V2YA 2LOYA 4A2VA 3P3KA 3OG8A 3FACA 4TZUA 4CI2B 3ZD7A 2RQBA 5AMHA 4BPBA 2RQAA 3E0MA 2LVLA 2QFBA 2KV1A 5F98A 1L1DA 2K8DA 2YKGA 4TZCA 3WX1A 3WX2A 3LRNA 3LRRA 3DJMA
chains in the Genus database with same CATH topology
4TZ4C 2KZNA 3HCJA 4V30A 4CI1B 3HCIA 3E0OA 3HCHA 3CEZA 4V2ZA 4CI3B 4V31A 3CXKA 3MAOA 3HCGA 4V2YA 4CI2B 4TZUA 5AMHA 3E0MA 2KV1A 1L1DA 2K8DA 4TZCA 3WX1A 3WX2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TZ4 C;  2KZN A;  3HCJ A;  4V30 A;  4CI1 B;  3HCI A;  3E0O A;  3HCH A;  3CEZ A;  4V2Z A;  4CI3 B;  4V31 A;  3CXK A;  3MAO A;  3HCG A;  4V2Y A;  4CI2 B;  4TZU A;  5AMH A;  3E0M A;  2KV1 A;  1L1D A;  2K8D A;  4TZC A;  3WX1 A;  3WX2 A; 
#chains in the Genus database with same CATH topology
 3GA3 A;  5E3H A;  1H6Q A;  4A2X A;  5F9F A;  4TZ4 C;  2RMJ A;  2KZN A;  3ZD6 A;  3HCJ A;  1YZ1 A;  2FU5 A;  4V30 A;  5F9H A;  4CI1 B;  3EQT A;  3NCU A;  1HXR A;  3HCI A;  1FWQ A;  4AY2 A;  2W4R A;  1H7Y A;  3E0O A;  2QFD A;  3CEZ A;  3HCH A;  4V2Z A;  3EBM A;  3CXK A;  1TXJ A;  3MAO A;  4V31 A;  4CI3 B;  3HCG A;  2KWB A;  2HR9 A;  4V2Y A;  2LOY A;  4A2V A;  3P3K A;  3OG8 A;  3FAC A;  4TZU A;  4CI2 B;  3ZD7 A;  2RQB A;  5AMH A;  4BPB A;  2RQA A;  3E0M A;  2LVL A;  2QFB A;  2KV1 A;  5F98 A;  1L1D A;  2K8D A;  2YKG A;  4TZC A;  3WX1 A;  3WX2 A;  3LRN A;  3LRR A;  3DJM A; 
#chains in the Genus database with same CATH homology
 4TZ4 C;  2KZN A;  3HCJ A;  4V30 A;  4CI1 B;  3HCI A;  3E0O A;  3HCH A;  3CEZ A;  4V2Z A;  4CI3 B;  4V31 A;  3CXK A;  3MAO A;  3HCG A;  4V2Y A;  4CI2 B;  4TZU A;  5AMH A;  3E0M A;  2KV1 A;  1L1D A;  2K8D A;  4TZC A;  3WX1 A;  3WX2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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