3MEJA

Crystal structure of putative transcriptional regulator ywtf from bacillus subtilis, northeast structural genomics consortium target sr736
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
273
structure length
251
Chain Sequence
HVSLARGEQSVKRIKEFDPGKDSFSVLLLGIDQARSDANVLVTFNRKEKTAKMLSIPRDAYVNIPGHGYDKFTHAHAYGGVDLTVKTVEEMLDIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTRKSDLLRGQRQMEVLSAIIDKSKSLDTMGQNLKMNLSLKDAIGLFPFITSLKSVESIQLTGYDYEPAGVYYFKLNQQKLQEVKKELQNDLGVL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcriptional regulator
molecule keywords transcriptional regulator ywtF
publication title Northeast Structural Genomics Consortium Target SR736
rcsb
source organism Bacillus subtilis
total genus 73
structure length 251
sequence length 273
ec nomenclature
pdb deposition date 2010-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03816 LytR_cpsA_psr Cell envelope-related transcriptional attenuator domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.260.150 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3mejA02
1.10.260.190 Mainly Alpha Orthogonal Bundle 434 Repressor (Amino-terminal Domain) 434 Repressor (Amino-terminal Domain) 3mejA01
3MEJA 2XXQA 3NROA 3TEPA 3OKZA 4DE8A 4OBMA 3NXHA 4DE9A 3QFIA 3TELA 2XXPA 3PE5A 3OWQA 3TFLA
chains in the Genus database with same CATH superfamily
2AUWA 5K98B 2CSFA 4Z5HA 1ZUGA 3QOXA 2IUOA 4DE8A 1OCTC 3TRBA 4PU8A 3OP9A 1ADRA 3H5TA 2PXTA 3KL4A 4IVZA 3TELA 2PIJA 1NW3A 4MCXA 2OFYA 3O9XA 3FMYA 1CJGA 2PXPA 4X4DA 1E3OC 4ER5A 2L1PA 3R09A 4YG4A 3VK0A 4X4BA 3KZ3A 3JXCL 2JCGA 1LLIA 2V3CC 2HSGA 2WUSR 2BNNA 3F52A 2AXZA 3QOWA 3VWSA 3EUSA 1QPZA 3D1NI 1BDIA 3CROL 2O38A 4MCTA 2H8RA 1RZRD 3DM5A 1ZVVA 3SR4A 5GAGi 2XIUA 1HF0A 1JWLA 2VEOA 3QYXA 3QWGA 4I6UA 2PXEA 1B0NA 4X4EA 2O49A 4JQDA 2XCJA 4EKIA 5DRTA 4J1XA 2XXQA 5DTQA 4X4HA 1IC8A 2PXVA 2MQKA 3A9ZA 2MEZA 4I8TA 1QQAA 4Q2JA 3GUUA 4EZIA 1QP0A 2LNMA 4YG7B 1QP4A 2YBDA 4IWRA 2IVBA 4X4GA 1QP7A 3M9LA 3QFIA 2M4HA 3L1PA 1Y7YA 3KJXA 3ZHMA 1XWRA 3OMTA 3OQOA 2PUBA 1L1MA 5GAHi 2LYQA 1X2LA 3GN5A 2ODRD 4WVLA 1PERL 1ZZ8A 2J7UA 4ER6A 3OQMA 3RZZA 2PXFA 1BDHA 3GBFA 1CQTA 2EWTA 4X4FA 2JVLA 1WIZA 4I6RA 2BNOA 3NDBB 4Z5CA 2IV1A 3NZLA 4Y42A 1RIOA 2PUAA 1NERA 2L8NA 3S8QA 2JQEA 1SQ8A 2PXLA 1ZPQA 2LYSA 1PRAA 4YG1A 3LFPA 5JUWA 4X4CA 1MFQC 2PUCA 3BS3A 2HCNA 4PU4C 1ZZBA 4JCYA 4YBAA 3GZCA 3LQXA 1JH9A 1ZZ7A 2EBYA 2PUGA 2R1JL 2D5VA 1LQCA 1POUA 4ER3A 3MLFA 3A9YA 2PXDA 1JFTA 4I6TA 2LLWA 2HFZA 1QQBA 3UFDA 1PNRA 2XXPA 4JCXA 2PUDA 4HRAA 1GT0C 3PE5A 2PXQA 3U3WA 2KPJA 4Z59A 2LLVA 2BJCA 2B5AA 1WETA 3G7DA 4EKGA 2KEKA 3QF3A 4IA8A 3QQ6A 2WIUB 3ZKCA 4ER7A 3HZIB 3ME5A 3BD1A 1NEQA 2AXUA 1QZXA 4Z5DA 3G5GA 2AW6A 2PXUA 4PU3C 3KXAA 3BDNA 1ZZ9A 2EF8A 2KZ8A 2ICTA 1UXDA 1UXCA 1RZRA 4Z58A 1R63A 1VPWA 2PE5A 3SCHA 4NDWA 5A7LA 2GZUA 1EFAA 1YSEA 3CLCA 3IVPA 1RPEL 3B7HA 5DSXA 1LCDA 2XI8A 1WH8A 1JFSA 3JXDL 1QB2A 3OKZA 4DE9A 2L49A 2R63A 3FYAA 2HCSA 4OBMA 1ZZ6A 2BNMA 3SCFA 4F8DA 3TFLA 3MEJA 4YARA 1ZZCA 4EK9A 2A6CA 3TEPA 2IU7A 2KEJA 3FYMA 5DTRA 3SX0A 1AU7A 2PXBA 3SCGA 2LYRA 4FN3A 5DRYA 1LCCA 3ZHIA 3F51A 3G0TA 1U2ZA 4X4IA 3NROA 2LCVA 2FFHA 4OB4A 1UTXA 1ZAYA 3F6WA 2PUEA 2XXAA 5DTMA 2ICPA 3OQNA 1PRUA 1R69A 3JXBC 1ZS4A 1Y9QA 4ER0A 1WH6A 2LYPA 3DNVB 2AWIA 2PXKA 2IVQA 1X57A 3LISA 1DW9A 2FJRA 4PU7A 3A9XA 2AXVA 2OR1L 3GZDA 1OSLA 3GZDC 4GHJA 2GRMA 3UWPA 4EQZA 2CROA 2MXDA 2XSDC 1DWKA 1HQ1A 3CECA 1LMB3 2XJ3A 2LYKA 3R1FA 2O4AA 2PUFA 3OWQA 1O4XA 3NXHA 1DULA 3GN5B 3PXPA 1S7EA 4O8BA 2KEIA 2GRLA 1PRVA 2IVGA 2HINA 4J1WA 5DT2A 1RZSA 2LYLA 3ZPXA 2J7WA 2PPXA 4GQMA 2LYJA 4FBIA
chains in the Genus database with same CATH topology
4WVLA 3VWSA 3MEJA 4ER5A 3QOXA 2J7UA 3M9LA 2L1PA 4ER6A 2LLVA 3R09A 4EKIA 5DRTA 3QFIA 4ER3A 3UWPA 3G0TA 3TFLA 1U2ZA 2M4HA 4EK9A 4DE8A 4EQZA 5JUWA 3A9YA 2MXDA 2XXQA 3NROA 3TEPA 5DTQA 5DSXA 5DT2A 3SR4A 2LLWA 3A9ZA 2HFZA 4EKGA 5DTRA 2HCNA 3A9XA 3SX0A 3ZPXA 3OKZA 4DE9A 3TELA 2XXPA 3GZCA 1NW3A 3GZDA 3OWQA 3NZLA 2J7WA 2VEOA 4Q2JA 3GUUA 5DRYA 5DTMA 2ODRD 4EZIA 2HCSA 2LNMA 3NXHA 4HRAA 4OBMA 3PE5A 4ER7A 3QOWA 3GZDC 2YBDA 3ME5A 4ER0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MEJ A;  2XXQ A;  3NRO A;  3TEP A;  3OKZ A;  4DE8 A;  4OBM A;  3NXH A;  4DE9 A;  3QFI A;  3TEL A;  2XXP A;  3PE5 A;  3OWQ A;  3TFL A; 
#chains in the Genus database with same CATH topology
 2AUW A;  5K98 B;  2CSF A;  4Z5H A;  1ZUG A;  3QOX A;  2IUO A;  4DE8 A;  1OCT C;  3TRB A;  4PU8 A;  3OP9 A;  1ADR A;  3H5T A;  2PXT A;  3KL4 A;  4IVZ A;  3TEL A;  2PIJ A;  1NW3 A;  4MCX A;  2OFY A;  3O9X A;  3FMY A;  1CJG A;  2PXP A;  4X4D A;  1E3O C;  4ER5 A;  2L1P A;  3R09 A;  4YG4 A;  3VK0 A;  4X4B A;  3KZ3 A;  3JXC L;  2JCG A;  1LLI A;  2V3C C;  2HSG A;  2WUS R;  2BNN A;  3F52 A;  2AXZ A;  3QOW A;  3VWS A;  3EUS A;  1QPZ A;  3D1N I;  1BDI A;  3CRO L;  2O38 A;  4MCT A;  2H8R A;  1RZR D;  3DM5 A;  1ZVV A;  3SR4 A;  5GAG i;  2XIU A;  1HF0 A;  1JWL A;  2VEO A;  3QYX A;  3QWG A;  4I6U A;  2PXE A;  1B0N A;  4X4E A;  2O49 A;  4JQD A;  2XCJ A;  4EKI A;  5DRT A;  4J1X A;  2XXQ A;  5DTQ A;  4X4H A;  1IC8 A;  2PXV A;  2MQK A;  3A9Z A;  2MEZ A;  4I8T A;  1QQA A;  4Q2J A;  3GUU A;  4EZI A;  1QP0 A;  2LNM A;  4YG7 B;  1QP4 A;  2YBD A;  4IWR A;  2IVB A;  4X4G A;  1QP7 A;  3M9L A;  3QFI A;  2M4H A;  3L1P A;  1Y7Y A;  3KJX A;  3ZHM A;  1XWR A;  3OMT A;  3OQO A;  2PUB A;  1L1M A;  5GAH i;  2LYQ A;  1X2L A;  3GN5 A;  2ODR D;  4WVL A;  1PER L;  1ZZ8 A;  2J7U A;  4ER6 A;  3OQM A;  3RZZ A;  2PXF A;  1BDH A;  3GBF A;  1CQT A;  2EWT A;  4X4F A;  2JVL A;  1WIZ A;  4I6R A;  2BNO A;  3NDB B;  4Z5C A;  2IV1 A;  3NZL A;  4Y42 A;  1RIO A;  2PUA A;  1NER A;  2L8N A;  3S8Q A;  2JQE A;  1SQ8 A;  2PXL A;  1ZPQ A;  2LYS A;  1PRA A;  4YG1 A;  3LFP A;  5JUW A;  4X4C A;  1MFQ C;  2PUC A;  3BS3 A;  2HCN A;  4PU4 C;  1ZZB A;  4JCY A;  4YBA A;  3GZC A;  3LQX A;  1JH9 A;  1ZZ7 A;  2EBY A;  2PUG A;  2R1J L;  2D5V A;  1LQC A;  1POU A;  4ER3 A;  3MLF A;  3A9Y A;  2PXD A;  1JFT A;  4I6T A;  2LLW A;  2HFZ A;  1QQB A;  3UFD A;  1PNR A;  2XXP A;  4JCX A;  2PUD A;  4HRA A;  1GT0 C;  3PE5 A;  2PXQ A;  3U3W A;  2KPJ A;  4Z59 A;  2LLV A;  2BJC A;  2B5A A;  1WET A;  3G7D A;  4EKG A;  2KEK A;  3QF3 A;  4IA8 A;  3QQ6 A;  2WIU B;  3ZKC A;  4ER7 A;  3HZI B;  3ME5 A;  3BD1 A;  1NEQ A;  2AXU A;  1QZX A;  4Z5D A;  3G5G A;  2AW6 A;  2PXU A;  4PU3 C;  3KXA A;  3BDN A;  1ZZ9 A;  2EF8 A;  2KZ8 A;  2ICT A;  1UXD A;  1UXC A;  1RZR A;  4Z58 A;  1R63 A;  1VPW A;  2PE5 A;  3SCH A;  4NDW A;  5A7L A;  2GZU A;  1EFA A;  1YSE A;  3CLC A;  3IVP A;  1RPE L;  3B7H A;  5DSX A;  1LCD A;  2XI8 A;  1WH8 A;  1JFS A;  3JXD L;  1QB2 A;  3OKZ A;  4DE9 A;  2L49 A;  2R63 A;  3FYA A;  2HCS A;  4OBM A;  1ZZ6 A;  2BNM A;  3SCF A;  4F8D A;  3TFL A;  3MEJ A;  4YAR A;  1ZZC A;  4EK9 A;  2A6C A;  3TEP A;  2IU7 A;  2KEJ A;  3FYM A;  5DTR A;  3SX0 A;  1AU7 A;  2PXB A;  3SCG A;  2LYR A;  4FN3 A;  5DRY A;  1LCC A;  3ZHI A;  3F51 A;  3G0T A;  1U2Z A;  4X4I A;  3NRO A;  2LCV A;  2FFH A;  4OB4 A;  1UTX A;  1ZAY A;  3F6W A;  2PUE A;  2XXA A;  5DTM A;  2ICP A;  3OQN A;  1PRU A;  1R69 A;  3JXB C;  1ZS4 A;  1Y9Q A;  4ER0 A;  1WH6 A;  2LYP A;  3DNV B;  2AWI A;  2PXK A;  2IVQ A;  1X57 A;  3LIS A;  1DW9 A;  2FJR A;  4PU7 A;  3A9X A;  2AXV A;  2OR1 L;  3GZD A;  1OSL A;  3GZD C;  4GHJ A;  2GRM A;  3UWP A;  4EQZ A;  2CRO A;  2MXD A;  2XSD C;  1DWK A;  1HQ1 A;  3CEC A;  1LMB 3;  2XJ3 A;  2LYK A;  3R1F A;  2O4A A;  2PUF A;  3OWQ A;  1O4X A;  3NXH A;  1DUL A;  3GN5 B;  3PXP A;  1S7E A;  4O8B A;  2KEI A;  2GRL A;  1PRV A;  2IVG A;  2HIN A;  4J1W A;  5DT2 A;  1RZS A;  2LYL A;  3ZPX A;  2J7W A;  2PPX A;  4GQM A;  2LYJ A;  4FBI A; 
#chains in the Genus database with same CATH homology
 4WVL A;  3VWS A;  3MEJ A;  4ER5 A;  3QOX A;  2J7U A;  3M9L A;  2L1P A;  4ER6 A;  2LLV A;  3R09 A;  4EKI A;  5DRT A;  3QFI A;  4ER3 A;  3UWP A;  3G0T A;  3TFL A;  1U2Z A;  2M4H A;  4EK9 A;  4DE8 A;  4EQZ A;  5JUW A;  3A9Y A;  2MXD A;  2XXQ A;  3NRO A;  3TEP A;  5DTQ A;  5DSX A;  5DT2 A;  3SR4 A;  2LLW A;  3A9Z A;  2HFZ A;  4EKG A;  5DTR A;  2HCN A;  3A9X A;  3SX0 A;  3ZPX A;  3OKZ A;  4DE9 A;  3TEL A;  2XXP A;  3GZC A;  1NW3 A;  3GZD A;  3OWQ A;  3NZL A;  2J7W A;  2VEO A;  4Q2J A;  3GUU A;  5DRY A;  5DTM A;  2ODR D;  4EZI A;  2HCS A;  2LNM A;  3NXH A;  4HRA A;  4OBM A;  3PE5 A;  4ER7 A;  3QOW A;  3GZD C;  2YBD A;  3ME5 A;  4ER0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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