3NDFA

Cleaved antitrypsin with p8-p6 asp
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
336
structure length
336
Chain Sequence
FNKITPNLAEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHAKKLSSWVLLMKYLGNATAIFFLPDEGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAPLKLSKAVHKAVLTIDEKGTEAAGADDDEAIPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase inhibitor
molecule keywords Alpha-1-antitrypsin
publication title Loop-sheet mechanism of serpin polymerization tested by reactive center loop mutations
pubmed doi rcsb
source organism Homo sapiens
total genus 89
structure length 336
sequence length 336
ec nomenclature
pdb deposition date 2010-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.39.10 Mainly Beta Roll Alpha-1-antitrypsin; domain 1 Alpha-1-antitrypsin, domain 1 3ndfA02
3.30.497.10 Alpha Beta 2-Layer Sandwich Antithrombin; Chain I, domain 2 Antithrombin, subunit I, domain 2 3ndfA01
4ROBA 1BR8I 4CAAA 4C41A 2B4XL 2WXYC 1DVMA 2WXWA 3DRMA 5IO1A 1XQJA 1E04I 1XQGA 1DZHI 2ANTI 3CAAA 2OL2A 3NDAA 4ZK0A 4RSQA 2H4PA 2PEEA 2XN5A 2QUGA 1JVQI 4AU4A 4BB2A 3UT3A 1LJ5A 1T1FA 3VVJA 3T1PA 4IC0A 1DB2A 1WZ9A 3F1SA 4RO9A 5CDXA 1SEKA 2HI9A 4AQHA 3EVJI 2RIWA 4C49A 4AU3B 1OPHA 2GD4C 5CE0A 2H4RA 2ARRA 1PSIA 4AJTA 1UHGA 2VDXA 2BEHI 1NQ9I 5HGCA 1DZGI 1K9OI 4P0FA 1DVNA 2WY0C 2V95A 5INWA 1B3KA 1SR5A 1EZXA 5C98A 4AFXA 3STOA 3B9FI 1OYHL 2HIJL 4IF8A 2B5TI 4AJUA 1JRRA 1M93B 4AU3A 3CWMA 1QMBA 3KCGI 4AU2A 3DLWA 4ZK3A 1HLEA 2H4QA 1OC0A 2B4XI 1JMJA 2ACHA 3CWLA 4EB1L 1JJOC 1HP7A 3DY0A 2WY1A 1E05I 1QLPA 3CVMA 1F0CA 4Y40A 3H5CA 1YXAA 1DZHL 3LW2A 1IMVA 2VDYA 1C5GA 4X30A 5EI0A 3PZFA 2XN3A 1OO8A 4ROAA 1OVAA 1A7CA 2HIJI 4Y3KA 1LQ8A 1ANTI 1TB6I 1OVAC 3R4LA 3FGQA 1QMNA 9PAIA 1BY7A 2R9YA 1OVAB 5CDZA 4PYWA 2WXXA 4YIAA 2XN7A 1C8OA 3PB1I 3Q02A 4EB1I 4DTEA 4G8RA 1AZXI 3NE4A 2ZNHA 4DY7C 3LE2A 4KDSA 2WXZA 1R1LI 4R9IA 1D5SA 2D26A 3OZQA 1MTPA 1SNGA 1JMOA 2WXZC 1XU8A 1ATTA 3EOXA 1AS4A 7APIA 2BEHL 2CEOA 3F5NA 8APIA 1IZ2A 4G8OA 2VH4A 3NDDA 1DZGL 3DRUA 1ATUA 1E03I 9APIA 1OYHI 1ATHA 2PEFA 4P0OA 2OAYA 3Q03A 3NDFA 1KCTA 2XN6A 2RIVA 5BRRI 4DY0A 2ARQA 2ZV6A 1LK6I 3ZHAA 1JTIA 3F02A 4GA7A 2DUTA
chains in the Genus database with same CATH superfamily
4ROBA 1BR8I 4CAAA 4C41A 2B4XL 2WXYC 1DVMA 2WXWA 3DRMA 5IO1A 1XQJA 1E04I 1XQGA 1DZHI 2ANTI 3CAAA 2OL2A 3NDAA 4ZK0A 4RSQA 2H4PA 2PEEA 2XN5A 2QUGA 1JVQI 4AU4A 4BB2A 3UT3A 1LJ5A 1T1FA 3VVJA 3T1PA 4IC0A 1DB2A 1WZ9A 3F1SA 4RO9A 5CDXA 1SEKA 2HI9A 4AQHA 3EVJI 2RIWA 4C49A 4AU3B 1OPHA 2GD4C 5CE0A 2H4RA 2ARRA 1PSIA 4AJTA 1UHGA 2VDXA 2BEHI 1NQ9I 5HGCA 1DZGI 1K9OI 4P0FA 1DVNA 2WY0C 2V95A 5INWA 1B3KA 1SR5A 1EZXA 5C98A 4AFXA 3STOA 3B9FI 1OYHL 2HIJL 4IF8A 2B5TI 4AJUA 1JRRA 1M93B 4AU3A 3CWMA 1QMBA 3KCGI 4AU2A 3DLWA 4ZK3A 1HLEA 2H4QA 1OC0A 2B4XI 1JMJA 2ACHA 3CWLA 4EB1L 1JJOC 1HP7A 3DY0A 2WY1A 1E05I 1QLPA 3CVMA 1F0CA 4Y40A 3H5CA 1YXAA 1DZHL 3LW2A 1IMVA 2VDYA 1C5GA 4X30A 5EI0A 3PZFA 2XN3A 1OO8A 4ROAA 1OVAA 1A7CA 2HIJI 4Y3KA 1LQ8A 1ANTI 1TB6I 1OVAC 3R4LA 3FGQA 1QMNA 9PAIA 1BY7A 2R9YA 1OVAB 5CDZA 4PYWA 2WXXA 4YIAA 2XN7A 1C8OA 3PB1I 3Q02A 4EB1I 4DTEA 4G8RA 1AZXI 3NE4A 2ZNHA 4DY7C 3LE2A 4KDSA 2WXZA 1R1LI 4R9IA 1D5SA 2D26A 3OZQA 1MTPA 1SNGA 1JMOA 2WXZC 1XU8A 1ATTA 3EOXA 1AS4A 7APIA 2BEHL 2CEOA 3F5NA 8APIA 1IZ2A 4G8OA 2VH4A 3NDDA 1DZGL 3DRUA 1ATUA 1E03I 9APIA 1OYHI 1ATHA 2PEFA 4P0OA 2OAYA 3Q03A 3NDFA 1KCTA 2XN6A 2RIVA 5BRRI 4DY0A 2ARQA 2ZV6A 1LK6I 3ZHAA 1JTIA 3F02A 4GA7A 2DUTA
chains in the Genus database with same CATH topology
4ROBA 1BR8I 4CAAA 4C41A 2B4XL 2WXYC 1DVMA 2WXWA 3DRMA 5IO1A 1XQJA 1E04I 1XQGA 1DZHI 2ANTI 3CAAA 2OL2A 3NDAA 4ZK0A 4RSQA 2H4PA 2PEEA 2XN5A 2QUGA 1JVQI 4AU4A 4BB2A 3UT3A 1LJ5A 1T1FA 3VVJA 3T1PA 4IC0A 1DB2A 1WZ9A 3F1SA 4RO9A 5CDXA 1SEKA 2HI9A 4AQHA 3EVJI 2RIWA 4C49A 4AU3B 1OPHA 2GD4C 5CE0A 2H4RA 2ARRA 1PSIA 4AJTA 1UHGA 2VDXA 2BEHI 1NQ9I 5HGCA 1DZGI 1K9OI 4P0FA 1DVNA 2WY0C 2V95A 5INWA 1B3KA 1SR5A 1EZXA 5C98A 4AFXA 3STOA 3B9FI 1OYHL 2HIJL 4IF8A 2B5TI 4AJUA 1JRRA 1M93B 4AU3A 3CWMA 1QMBA 3KCGI 4AU2A 3DLWA 4ZK3A 1HLEA 2H4QA 1OC0A 2B4XI 1JMJA 2ACHA 3CWLA 4EB1L 1JJOC 1HP7A 3DY0A 2WY1A 1E05I 1QLPA 3CVMA 1F0CA 4Y40A 3H5CA 1YXAA 1DZHL 3LW2A 1IMVA 2VDYA 1C5GA 4X30A 5EI0A 3PZFA 2XN3A 1OO8A 4ROAA 1OVAA 1A7CA 2HIJI 4Y3KA 1LQ8A 1ANTI 1TB6I 1OVAC 3R4LA 3FGQA 1QMNA 9PAIA 1BY7A 2R9YA 1OVAB 5CDZA 4PYWA 2WXXA 4YIAA 2XN7A 1C8OA 3PB1I 3Q02A 4EB1I 4DTEA 4G8RA 1AZXI 3NE4A 2ZNHA 4DY7C 3LE2A 4KDSA 2WXZA 1R1LI 4R9IA 1D5SA 2D26A 3OZQA 1MTPA 1SNGA 1JMOA 2WXZC 1XU8A 1ATTA 3EOXA 1AS4A 7APIA 2BEHL 2CEOA 3F5NA 8APIA 1IZ2A 4G8OA 2VH4A 3NDDA 1DZGL 3DRUA 1ATUA 1E03I 9APIA 1OYHI 1ATHA 2PEFA 4P0OA 2OAYA 3Q03A 3NDFA 1KCTA 2XN6A 2RIVA 5BRRI 4DY0A 2ARQA 2ZV6A 1LK6I 3ZHAA 1JTIA 3F02A 4GA7A 2DUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ROB A;  1BR8 I;  4CAA A;  4C41 A;  2B4X L;  2WXY C;  1DVM A;  2WXW A;  3DRM A;  5IO1 A;  1XQJ A;  1E04 I;  1XQG A;  1DZH I;  2ANT I;  3CAA A;  2OL2 A;  3NDA A;  4ZK0 A;  4RSQ A;  2H4P A;  2PEE A;  2XN5 A;  2QUG A;  1JVQ I;  4AU4 A;  4BB2 A;  3UT3 A;  1LJ5 A;  1T1F A;  3VVJ A;  3T1P A;  4IC0 A;  1DB2 A;  1WZ9 A;  3F1S A;  4RO9 A;  5CDX A;  1SEK A;  2HI9 A;  4AQH A;  3EVJ I;  2RIW A;  4C49 A;  4AU3 B;  1OPH A;  2GD4 C;  5CE0 A;  2H4R A;  2ARR A;  1PSI A;  4AJT A;  1UHG A;  2VDX A;  2BEH I;  1NQ9 I;  5HGC A;  1DZG I;  1K9O I;  4P0F A;  1DVN A;  2WY0 C;  2V95 A;  5INW A;  1B3K A;  1SR5 A;  1EZX A;  5C98 A;  4AFX A;  3STO A;  3B9F I;  1OYH L;  2HIJ L;  4IF8 A;  2B5T I;  4AJU A;  1JRR A;  1M93 B;  4AU3 A;  3CWM A;  1QMB A;  3KCG I;  4AU2 A;  3DLW A;  4ZK3 A;  1HLE A;  2H4Q A;  1OC0 A;  2B4X I;  1JMJ A;  2ACH A;  3CWL A;  4EB1 L;  1JJO C;  1HP7 A;  3DY0 A;  2WY1 A;  1E05 I;  1QLP A;  3CVM A;  1F0C A;  4Y40 A;  3H5C A;  1YXA A;  1DZH L;  3LW2 A;  1IMV A;  2VDY A;  1C5G A;  4X30 A;  5EI0 A;  3PZF A;  2XN3 A;  1OO8 A;  4ROA A;  1OVA A;  1A7C A;  2HIJ I;  4Y3K A;  1LQ8 A;  1ANT I;  1TB6 I;  1OVA C;  3R4L A;  3FGQ A;  1QMN A;  9PAI A;  1BY7 A;  2R9Y A;  1OVA B;  5CDZ A;  4PYW A;  2WXX A;  4YIA A;  2XN7 A;  1C8O A;  3PB1 I;  3Q02 A;  4EB1 I;  4DTE A;  4G8R A;  1AZX I;  3NE4 A;  2ZNH A;  4DY7 C;  3LE2 A;  4KDS A;  2WXZ A;  1R1L I;  4R9I A;  1D5S A;  2D26 A;  3OZQ A;  1MTP A;  1SNG A;  1JMO A;  2WXZ C;  1XU8 A;  1ATT A;  3EOX A;  1AS4 A;  7API A;  2BEH L;  2CEO A;  3F5N A;  8API A;  1IZ2 A;  4G8O A;  2VH4 A;  3NDD A;  1DZG L;  3DRU A;  1ATU A;  1E03 I;  9API A;  1OYH I;  1ATH A;  2PEF A;  4P0O A;  2OAY A;  3Q03 A;  3NDF A;  1KCT A;  2XN6 A;  2RIV A;  5BRR I;  4DY0 A;  2ARQ A;  2ZV6 A;  1LK6 I;  3ZHA A;  1JTI A;  3F02 A;  4GA7 A;  2DUT A; 
#chains in the Genus database with same CATH topology
 4ROB A;  1BR8 I;  4CAA A;  4C41 A;  2B4X L;  2WXY C;  1DVM A;  2WXW A;  3DRM A;  5IO1 A;  1XQJ A;  1E04 I;  1XQG A;  1DZH I;  2ANT I;  3CAA A;  2OL2 A;  3NDA A;  4ZK0 A;  4RSQ A;  2H4P A;  2PEE A;  2XN5 A;  2QUG A;  1JVQ I;  4AU4 A;  4BB2 A;  3UT3 A;  1LJ5 A;  1T1F A;  3VVJ A;  3T1P A;  4IC0 A;  1DB2 A;  1WZ9 A;  3F1S A;  4RO9 A;  5CDX A;  1SEK A;  2HI9 A;  4AQH A;  3EVJ I;  2RIW A;  4C49 A;  4AU3 B;  1OPH A;  2GD4 C;  5CE0 A;  2H4R A;  2ARR A;  1PSI A;  4AJT A;  1UHG A;  2VDX A;  2BEH I;  1NQ9 I;  5HGC A;  1DZG I;  1K9O I;  4P0F A;  1DVN A;  2WY0 C;  2V95 A;  5INW A;  1B3K A;  1SR5 A;  1EZX A;  5C98 A;  4AFX A;  3STO A;  3B9F I;  1OYH L;  2HIJ L;  4IF8 A;  2B5T I;  4AJU A;  1JRR A;  1M93 B;  4AU3 A;  3CWM A;  1QMB A;  3KCG I;  4AU2 A;  3DLW A;  4ZK3 A;  1HLE A;  2H4Q A;  1OC0 A;  2B4X I;  1JMJ A;  2ACH A;  3CWL A;  4EB1 L;  1JJO C;  1HP7 A;  3DY0 A;  2WY1 A;  1E05 I;  1QLP A;  3CVM A;  1F0C A;  4Y40 A;  3H5C A;  1YXA A;  1DZH L;  3LW2 A;  1IMV A;  2VDY A;  1C5G A;  4X30 A;  5EI0 A;  3PZF A;  2XN3 A;  1OO8 A;  4ROA A;  1OVA A;  1A7C A;  2HIJ I;  4Y3K A;  1LQ8 A;  1ANT I;  1TB6 I;  1OVA C;  3R4L A;  3FGQ A;  1QMN A;  9PAI A;  1BY7 A;  2R9Y A;  1OVA B;  5CDZ A;  4PYW A;  2WXX A;  4YIA A;  2XN7 A;  1C8O A;  3PB1 I;  3Q02 A;  4EB1 I;  4DTE A;  4G8R A;  1AZX I;  3NE4 A;  2ZNH A;  4DY7 C;  3LE2 A;  4KDS A;  2WXZ A;  1R1L I;  4R9I A;  1D5S A;  2D26 A;  3OZQ A;  1MTP A;  1SNG A;  1JMO A;  2WXZ C;  1XU8 A;  1ATT A;  3EOX A;  1AS4 A;  7API A;  2BEH L;  2CEO A;  3F5N A;  8API A;  1IZ2 A;  4G8O A;  2VH4 A;  3NDD A;  1DZG L;  3DRU A;  1ATU A;  1E03 I;  9API A;  1OYH I;  1ATH A;  2PEF A;  4P0O A;  2OAY A;  3Q03 A;  3NDF A;  1KCT A;  2XN6 A;  2RIV A;  5BRR I;  4DY0 A;  2ARQ A;  2ZV6 A;  1LK6 I;  3ZHA A;  1JTI A;  3F02 A;  4GA7 A;  2DUT A; 
#chains in the Genus database with same CATH homology
 4ROB A;  1BR8 I;  4CAA A;  4C41 A;  2B4X L;  2WXY C;  1DVM A;  2WXW A;  3DRM A;  5IO1 A;  1XQJ A;  1E04 I;  1XQG A;  1DZH I;  2ANT I;  3CAA A;  2OL2 A;  3NDA A;  4ZK0 A;  4RSQ A;  2H4P A;  2PEE A;  2XN5 A;  2QUG A;  1JVQ I;  4AU4 A;  4BB2 A;  3UT3 A;  1LJ5 A;  1T1F A;  3VVJ A;  3T1P A;  4IC0 A;  1DB2 A;  1WZ9 A;  3F1S A;  4RO9 A;  5CDX A;  1SEK A;  2HI9 A;  4AQH A;  3EVJ I;  2RIW A;  4C49 A;  4AU3 B;  1OPH A;  2GD4 C;  5CE0 A;  2H4R A;  2ARR A;  1PSI A;  4AJT A;  1UHG A;  2VDX A;  2BEH I;  1NQ9 I;  5HGC A;  1DZG I;  1K9O I;  4P0F A;  1DVN A;  2WY0 C;  2V95 A;  5INW A;  1B3K A;  1SR5 A;  1EZX A;  5C98 A;  4AFX A;  3STO A;  3B9F I;  1OYH L;  2HIJ L;  4IF8 A;  2B5T I;  4AJU A;  1JRR A;  1M93 B;  4AU3 A;  3CWM A;  1QMB A;  3KCG I;  4AU2 A;  3DLW A;  4ZK3 A;  1HLE A;  2H4Q A;  1OC0 A;  2B4X I;  1JMJ A;  2ACH A;  3CWL A;  4EB1 L;  1JJO C;  1HP7 A;  3DY0 A;  2WY1 A;  1E05 I;  1QLP A;  3CVM A;  1F0C A;  4Y40 A;  3H5C A;  1YXA A;  1DZH L;  3LW2 A;  1IMV A;  2VDY A;  1C5G A;  4X30 A;  5EI0 A;  3PZF A;  2XN3 A;  1OO8 A;  4ROA A;  1OVA A;  1A7C A;  2HIJ I;  4Y3K A;  1LQ8 A;  1ANT I;  1TB6 I;  1OVA C;  3R4L A;  3FGQ A;  1QMN A;  9PAI A;  1BY7 A;  2R9Y A;  1OVA B;  5CDZ A;  4PYW A;  2WXX A;  4YIA A;  2XN7 A;  1C8O A;  3PB1 I;  3Q02 A;  4EB1 I;  4DTE A;  4G8R A;  1AZX I;  3NE4 A;  2ZNH A;  4DY7 C;  3LE2 A;  4KDS A;  2WXZ A;  1R1L I;  4R9I A;  1D5S A;  2D26 A;  3OZQ A;  1MTP A;  1SNG A;  1JMO A;  2WXZ C;  1XU8 A;  1ATT A;  3EOX A;  1AS4 A;  7API A;  2BEH L;  2CEO A;  3F5N A;  8API A;  1IZ2 A;  4G8O A;  2VH4 A;  3NDD A;  1DZG L;  3DRU A;  1ATU A;  1E03 I;  9API A;  1OYH I;  1ATH A;  2PEF A;  4P0O A;  2OAY A;  3Q03 A;  3NDF A;  1KCT A;  2XN6 A;  2RIV A;  5BRR I;  4DY0 A;  2ARQ A;  2ZV6 A;  1LK6 I;  3ZHA A;  1JTI A;  3F02 A;  4GA7 A;  2DUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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