3NIPA

Crystal structure of pseudomonas aeruginosa guanidinopropionase complexed with 1,6-diaminohexane
Total Genus 114
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
Knots found
sequence length
316
structure length
316
Chain Sequence
NDHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Hydrolase
molecule keywords 3-guanidinopropionase
publication title Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 114
structure length 316
sequence length 316
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31 +31 +31
ec nomenclature ec 3.5.3.17: Guanidinopropionase.
pdb deposition date 2010-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.800.10 Alpha Beta 3-Layer(aba) Sandwich Arginase; Chain A Ureohydrolase domain 3nipA00
2RLAA 1HQHA 3THHA 3CEVA 2EIVA 1ZPGA 3E9BA 1T4TA 1WOGA 4IU4A 4Q3RA 4Q3PA 4HXQA 3SL1A 1XFKA 4IXUA 3DJ8A 2A0MA 1GQ7A 3E8ZA 3F80A 1T5FA 4MXRA 3NIQA 3MMRA 1P8PA 4IE1A 1HQFA 1GQ6A 1TA1A 3TH7A 1WOHA 4GSVA 1P8QA 4RLAA 5RLAA 4MYKA 3M1RA 1P8OA 4RHKA 4G3HA 4IU0A 3NIPA 3GN0A 4HWWA 4Q3SA 1T4RA 4MYNA 2CEVA 1TBHA 4IU5A 2PLLA 4IE2A 3MJLA 1R1OA 3LP4A 2PHAA 4Q40A 4FCIA 4Q41A 4IU1A 3NIOA 4GWCA 4CEVA 5CEVA 2AEBA 1HQXA 3LP7A 3MFVA 3MFWA 4Q3QA 4RHJA 3TF3A 1T4PA 4RHIA 3SL0A 3RLAA 4MYLA 3GMZA 4IE3A 2PHOA 4Q3UA 4GSZA 1P8MA 1RLAA 2ZAVA 1HQGA 1TBLA 2EF5A 4Q3TA 1T4SA 4ITYA 1ZPEA 4RHLA 3PZLA 4RHQA 4I06A 4Q3RC 3E6KA 1D3VA 4MYFA 3THJA 1PQ3A 4HZEA 3THEA 1WVBA 5HJ9A 1WVAA 4Q42A 3E8QA 4FCKA 1CEVA 3E6VA 3SJTA 3SKKA 4IXVA 1T5GA 4GWDA 1WOIA 1P8NA 2EF4A 3LHLA 1TBJA 1HQ5A 3KV2A 4Q3VA 5HJAA 1P8RA 4RHMA 4GSMA 4DZ4A 1P8SA
chains in the Genus database with same CATH superfamily
2RLAA 1ZZ0A 5G0GA 4QA7A 4ZUPA 1HQHA 3THHA 3CEVA 2EIVA 1ZPGA 3F0RA 3C10A 3E9BA 1T4TA 1WOGA 2VQOA 4IU4A 4Q3RA 4Q3PA 3ZNSA 4HXQA 3SL1A 5G12A 1XFKA 4IXUA 5JI5A 3DJ8A 2A0MA 1GQ7A 3E8ZA 1T67A 5G11A 3F80A 1T5FA 3MZ7A 3C0ZA 4MXRA 4ZURA 3NIQA 3MMRA 1P8PA 5FUEA 4IE1A 1HQFA 2V5XA 1GQ6A 1TA1A 3MZ3A 1WOHA 3TH7A 4GSVA 4RN1A 1P8QA 4RLAA 5G17A 5RLAA 4MYKA 4ZUNA 1VKGA 3M1RA 4ZUQA 1P8OA 4RHKA 4G3HA 4ZUMA 4IU0A 3NIPA 5G0JA 3GN0A 4HWWA 5DC8A 3ZNRA 4BZ7A 3Q9BA 4BZ5A 4Q3SA 3EZTA 1T64A 1T4RA 2V5WA 3EZPA 1W22A 4MYNA 4QA0A 2CEVA 1TBHA 4IU5A 1C3SA 5LI3A 2PLLA 4BKXB 5BWZA 4IE2A 3MZ6A 3MJLA 1R1OA 3LP4A 5THTA 5G1AA 4QA2A 2VQJA 5EFNA 1C3RA 5IX0A 2PHAA 5EFJD 4Q40A 4ZUOA 4QA3A 4FCIA 5EENA 5D1BA 4Q41A 5G10A 4IU1A 5G0HA 3NIOA 4GWCA 4CEVA 5A2SA 4RN2A 5CEVA 2AEBA 1HQXA 3LP7A 2VQWG 4CQFA 3MFVA 3MFWA 4Q3QA 4RHJA 5THUA 3TF3A 1T4PA 4RHIA 3SL0A 5EEKA 3RLAA 5G0XA 4MYLA 5G0YA 5ICNB 1T69A 3GMZA 4IE3A 3F06A 5IWGA 2PHOA 2VCGA 3MENA 4Q3UA 5DC6A 4GSZA 1P8MA 1RLAA 2ZAVA 5EFBD 2VQVA 1HQGA 1TBLA 2EF5A 2VQMA 5DC7A 4Q3TA 1T4SA 3EW8A 3MAXA 2VQQA 4BZ9A 4CBTA 4ITYA 4LY1A 1ZPEA 4RHLA 5EFHA 3SFHA 5G3WA 3PZLA 4RHQA 5DC5A 5D1CA 4I06A 5G1CA 3MZ4A 4Q3RC 3E6KA 1D3VA 3EWFA 3C0YA 4MYFA 4QA6A 3THJA 1PQ3A 4HZEA 5EEIA 5EFGA 1WVBA 1ZZ1A 3Q9FA 4LXZA 5EEMA 5EEFA 5HJ9A 3THEA 1WVAA 4Q42A 1C3PA 3E8QA 5THSA 3Q9EA 4BZ8A 3Q9CA 5EF7A 5G13A 3SFFA 1ZZ3A 5FCWA 4FCKA 1CEVA 3F07A 4RN0A 3RQDA 3E6VA 4A69A 3SJTA 4CBYA 5D1DA 5G1BA 4IXVA 3SKKA 4QA5A 1T5GA 4GWDA 1WOIA 1P8NA 2EF4A 1TBJA 1HQ5A 3LHLA 5EFKB 3KV2A 4Q3VA 5THVA 5HJAA 5G0IA 1P8RA 4QA1A 4RHMA 4QA4A 4BZ6A 4GSMA 4DZ4A 2GH6A 1P8SA 5EF8A
chains in the Genus database with same CATH topology
2RLAA 1HQHA 3THHA 3CEVA 2EIVA 1ZPGA 3E9BA 1T4TA 1WOGA 4IU4A 4Q3RA 4Q3PA 4HXQA 3SL1A 1XFKA 4IXUA 3DJ8A 2A0MA 1GQ7A 3E8ZA 3F80A 1T5FA 4MXRA 3NIQA 3MMRA 1P8PA 4IE1A 1HQFA 1GQ6A 1TA1A 3TH7A 1WOHA 4GSVA 1P8QA 4RLAA 5RLAA 4MYKA 3M1RA 1P8OA 4RHKA 4G3HA 4IU0A 3NIPA 3GN0A 4HWWA 4Q3SA 1T4RA 4MYNA 2CEVA 1TBHA 4IU5A 2PLLA 4IE2A 3MJLA 1R1OA 3LP4A 2PHAA 4Q40A 4FCIA 4Q41A 4IU1A 3NIOA 4GWCA 4CEVA 5CEVA 2AEBA 1HQXA 3LP7A 3MFVA 3MFWA 4Q3QA 4RHJA 3TF3A 1T4PA 4RHIA 3SL0A 3RLAA 4MYLA 3GMZA 4IE3A 2PHOA 4Q3UA 4GSZA 1P8MA 1RLAA 2ZAVA 1HQGA 1TBLA 2EF5A 4Q3TA 1T4SA 4ITYA 1ZPEA 4RHLA 3PZLA 4RHQA 4I06A 4Q3RC 3E6KA 1D3VA 4MYFA 3THJA 1PQ3A 4HZEA 3THEA 1WVBA 5HJ9A 1WVAA 4Q42A 3E8QA 4FCKA 1CEVA 3E6VA 3SJTA 3SKKA 4IXVA 1T5GA 4GWDA 1WOIA 1P8NA 2EF4A 3LHLA 1TBJA 1HQ5A 3KV2A 4Q3VA 5HJAA 1P8RA 4RHMA 4GSMA 4DZ4A 1P8SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RLA A;  1HQH A;  3THH A;  3CEV A;  2EIV A;  1ZPG A;  3E9B A;  1T4T A;  1WOG A;  4IU4 A;  4Q3R A;  4Q3P A;  4HXQ A;  3SL1 A;  1XFK A;  4IXU A;  3DJ8 A;  2A0M A;  1GQ7 A;  3E8Z A;  3F80 A;  1T5F A;  4MXR A;  3NIQ A;  3MMR A;  1P8P A;  4IE1 A;  1HQF A;  1GQ6 A;  1TA1 A;  3TH7 A;  1WOH A;  4GSV A;  1P8Q A;  4RLA A;  5RLA A;  4MYK A;  3M1R A;  1P8O A;  4RHK A;  4G3H A;  4IU0 A;  3NIP A;  3GN0 A;  4HWW A;  4Q3S A;  1T4R A;  4MYN A;  2CEV A;  1TBH A;  4IU5 A;  2PLL A;  4IE2 A;  3MJL A;  1R1O A;  3LP4 A;  2PHA A;  4Q40 A;  4FCI A;  4Q41 A;  4IU1 A;  3NIO A;  4GWC A;  4CEV A;  5CEV A;  2AEB A;  1HQX A;  3LP7 A;  3MFV A;  3MFW A;  4Q3Q A;  4RHJ A;  3TF3 A;  1T4P A;  4RHI A;  3SL0 A;  3RLA A;  4MYL A;  3GMZ A;  4IE3 A;  2PHO A;  4Q3U A;  4GSZ A;  1P8M A;  1RLA A;  2ZAV A;  1HQG A;  1TBL A;  2EF5 A;  4Q3T A;  1T4S A;  4ITY A;  1ZPE A;  4RHL A;  3PZL A;  4RHQ A;  4I06 A;  4Q3R C;  3E6K A;  1D3V A;  4MYF A;  3THJ A;  1PQ3 A;  4HZE A;  3THE A;  1WVB A;  5HJ9 A;  1WVA A;  4Q42 A;  3E8Q A;  4FCK A;  1CEV A;  3E6V A;  3SJT A;  3SKK A;  4IXV A;  1T5G A;  4GWD A;  1WOI A;  1P8N A;  2EF4 A;  3LHL A;  1TBJ A;  1HQ5 A;  3KV2 A;  4Q3V A;  5HJA A;  1P8R A;  4RHM A;  4GSM A;  4DZ4 A;  1P8S A; 
#chains in the Genus database with same CATH topology
 2RLA A;  1ZZ0 A;  5G0G A;  4QA7 A;  4ZUP A;  1HQH A;  3THH A;  3CEV A;  2EIV A;  1ZPG A;  3F0R A;  3C10 A;  3E9B A;  1T4T A;  1WOG A;  2VQO A;  4IU4 A;  4Q3R A;  4Q3P A;  3ZNS A;  4HXQ A;  3SL1 A;  5G12 A;  1XFK A;  4IXU A;  5JI5 A;  3DJ8 A;  2A0M A;  1GQ7 A;  3E8Z A;  1T67 A;  5G11 A;  3F80 A;  1T5F A;  3MZ7 A;  3C0Z A;  4MXR A;  4ZUR A;  3NIQ A;  3MMR A;  1P8P A;  5FUE A;  4IE1 A;  1HQF A;  2V5X A;  1GQ6 A;  1TA1 A;  3MZ3 A;  1WOH A;  3TH7 A;  4GSV A;  4RN1 A;  1P8Q A;  4RLA A;  5G17 A;  5RLA A;  4MYK A;  4ZUN A;  1VKG A;  3M1R A;  4ZUQ A;  1P8O A;  4RHK A;  4G3H A;  4ZUM A;  4IU0 A;  3NIP A;  5G0J A;  3GN0 A;  4HWW A;  5DC8 A;  3ZNR A;  4BZ7 A;  3Q9B A;  4BZ5 A;  4Q3S A;  3EZT A;  1T64 A;  1T4R A;  2V5W A;  3EZP A;  1W22 A;  4MYN A;  4QA0 A;  2CEV A;  1TBH A;  4IU5 A;  1C3S A;  5LI3 A;  2PLL A;  4BKX B;  5BWZ A;  4IE2 A;  3MZ6 A;  3MJL A;  1R1O A;  3LP4 A;  5THT A;  5G1A A;  4QA2 A;  2VQJ A;  5EFN A;  1C3R A;  5IX0 A;  2PHA A;  5EFJ D;  4Q40 A;  4ZUO A;  4QA3 A;  4FCI A;  5EEN A;  5D1B A;  4Q41 A;  5G10 A;  4IU1 A;  5G0H A;  3NIO A;  4GWC A;  4CEV A;  5A2S A;  4RN2 A;  5CEV A;  2AEB A;  1HQX A;  3LP7 A;  2VQW G;  4CQF A;  3MFV A;  3MFW A;  4Q3Q A;  4RHJ A;  5THU A;  3TF3 A;  1T4P A;  4RHI A;  3SL0 A;  5EEK A;  3RLA A;  5G0X A;  4MYL A;  5G0Y A;  5ICN B;  1T69 A;  3GMZ A;  4IE3 A;  3F06 A;  5IWG A;  2PHO A;  2VCG A;  3MEN A;  4Q3U A;  5DC6 A;  4GSZ A;  1P8M A;  1RLA A;  2ZAV A;  5EFB D;  2VQV A;  1HQG A;  1TBL A;  2EF5 A;  2VQM A;  5DC7 A;  4Q3T A;  1T4S A;  3EW8 A;  3MAX A;  2VQQ A;  4BZ9 A;  4CBT A;  4ITY A;  4LY1 A;  1ZPE A;  4RHL A;  5EFH A;  3SFH A;  5G3W A;  3PZL A;  4RHQ A;  5DC5 A;  5D1C A;  4I06 A;  5G1C A;  3MZ4 A;  4Q3R C;  3E6K A;  1D3V A;  3EWF A;  3C0Y A;  4MYF A;  4QA6 A;  3THJ A;  1PQ3 A;  4HZE A;  5EEI A;  5EFG A;  1WVB A;  1ZZ1 A;  3Q9F A;  4LXZ A;  5EEM A;  5EEF A;  5HJ9 A;  3THE A;  1WVA A;  4Q42 A;  1C3P A;  3E8Q A;  5THS A;  3Q9E A;  4BZ8 A;  3Q9C A;  5EF7 A;  5G13 A;  3SFF A;  1ZZ3 A;  5FCW A;  4FCK A;  1CEV A;  3F07 A;  4RN0 A;  3RQD A;  3E6V A;  4A69 A;  3SJT A;  4CBY A;  5D1D A;  5G1B A;  4IXV A;  3SKK A;  4QA5 A;  1T5G A;  4GWD A;  1WOI A;  1P8N A;  2EF4 A;  1TBJ A;  1HQ5 A;  3LHL A;  5EFK B;  3KV2 A;  4Q3V A;  5THV A;  5HJA A;  5G0I A;  1P8R A;  4QA1 A;  4RHM A;  4QA4 A;  4BZ6 A;  4GSM A;  4DZ4 A;  2GH6 A;  1P8S A;  5EF8 A; 
#chains in the Genus database with same CATH homology
 2RLA A;  1HQH A;  3THH A;  3CEV A;  2EIV A;  1ZPG A;  3E9B A;  1T4T A;  1WOG A;  4IU4 A;  4Q3R A;  4Q3P A;  4HXQ A;  3SL1 A;  1XFK A;  4IXU A;  3DJ8 A;  2A0M A;  1GQ7 A;  3E8Z A;  3F80 A;  1T5F A;  4MXR A;  3NIQ A;  3MMR A;  1P8P A;  4IE1 A;  1HQF A;  1GQ6 A;  1TA1 A;  3TH7 A;  1WOH A;  4GSV A;  1P8Q A;  4RLA A;  5RLA A;  4MYK A;  3M1R A;  1P8O A;  4RHK A;  4G3H A;  4IU0 A;  3NIP A;  3GN0 A;  4HWW A;  4Q3S A;  1T4R A;  4MYN A;  2CEV A;  1TBH A;  4IU5 A;  2PLL A;  4IE2 A;  3MJL A;  1R1O A;  3LP4 A;  2PHA A;  4Q40 A;  4FCI A;  4Q41 A;  4IU1 A;  3NIO A;  4GWC A;  4CEV A;  5CEV A;  2AEB A;  1HQX A;  3LP7 A;  3MFV A;  3MFW A;  4Q3Q A;  4RHJ A;  3TF3 A;  1T4P A;  4RHI A;  3SL0 A;  3RLA A;  4MYL A;  3GMZ A;  4IE3 A;  2PHO A;  4Q3U A;  4GSZ A;  1P8M A;  1RLA A;  2ZAV A;  1HQG A;  1TBL A;  2EF5 A;  4Q3T A;  1T4S A;  4ITY A;  1ZPE A;  4RHL A;  3PZL A;  4RHQ A;  4I06 A;  4Q3R C;  3E6K A;  1D3V A;  4MYF A;  3THJ A;  1PQ3 A;  4HZE A;  3THE A;  1WVB A;  5HJ9 A;  1WVA A;  4Q42 A;  3E8Q A;  4FCK A;  1CEV A;  3E6V A;  3SJT A;  3SKK A;  4IXV A;  1T5G A;  4GWD A;  1WOI A;  1P8N A;  2EF4 A;  3LHL A;  1TBJ A;  1HQ5 A;  3KV2 A;  4Q3V A;  5HJA A;  1P8R A;  4RHM A;  4GSM A;  4DZ4 A;  1P8S A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...