3NVLA

Crystal structure of phosphoglycerate mutase from trypanosoma brucei
Total Genus 199
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
199
Knots found
sequence length
549
structure length
549
Chain Sequence
LTLAAHKTLPRRKLVLVVLDGVGIGPRDEYDAVHVAKTPLMDALFNDPKHFRSICAHGTAVGLPTDADMGNSEVGHNALGAGRVVLQGASLVDDALESGEIFTSEGYRYLHGAFSQPGRTLHLIGLLSDGGVHSRDNQVYQILKHAGANGAKRIRVHALYDGRDVPDKTSFKFTDELEEVLAKLREGGCDARIASGGGRMFVTMDRYEADWSIVERGWRAQVLGEGRAFKSAREALTKFREEDANISDQYYPPFVIAGDDGRPIGTIEDGDAVLCFNFRGDRVIEMSRAFEEEEFDKFNRVRLPKVRYAGMMRYDGDLGIPNNFLVPPPKLTRTSEEYLIGSGCNIFALSETQKFGHVTYFWNGNRSGKLSEERETFCEIPSDRVQFNQKPLMKSKEITDAAVDAIKSGKYDMIRINYPNGDMVGHTGDLKATITSLEAVDQSLQRLKEAVDSVNGVFLITADHGNSDDMVQRDKKGKPVRDAEGNLMPLTSHTLAPVPVFIGGAGLDPRVQMRTDLPRAGLANVTATFINLMGFEAPSDYEPSLIEVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
publication title Crystal structure of phosphoglycerate mutase from Trypanosoma brucei.
pubmed doi rcsb
source organism Trypanosoma brucei
total genus 199
structure length 549
sequence length 549
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 5.4.2.1: Transferred entry: 5.4.2.11 and 5.4.2.12.
pdb deposition date 2010-07-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
A PF06415 iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3nvlA01
3.40.1450.10 Alpha Beta 3-Layer(aba) Sandwich 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain BPG-independent phosphoglycerate mutase, domain B 3nvlA02
3MK2A 1KHNA 4LRCA 3UO0A 1URBA 5AJ9A 1KH7A 1KHLA 1B8JA 1E3CP 3IGZB 1KHJA 2W5XA 1AUKA 3NKQA 4LRBA 4TN0A 3TWZA 5L0EA 3MK0A 4ZGAA 3WAVA 3TX0A 3WAXA 2G9YA 5GOVA 3SZYA 4UPIA 5LQQA 1N2LA 1SHQA 3WAWA 1P49A 4UOPA 2W8DA 3T02A 3NKNA 3DYCA 4LR9A 5L0KA 3M7VA 5C66A 1AJCA 3BDFA 3BDGB 5DLWA 1ANIA 2GSUA 1Y7AA 2W5QA 3ED4A 2W5TA 1K7HA 2VQRA 4CXSA 1E33P 3M8WA 1ZEDA 4GTYA 2W5SA 5LRMA 5L0BA 4LREA 1ZEFA 2IUCB 2W5VA 2IFYA 1HDHA 4LR7A 4UPHA 3OT9A 1EW8A 1URAA 5GRRA 4LR8A 1O98A 4N7TA 4MHXA 4NWXA 5IJQA 1FSUA 4CYRA 1AJDA 1HJKA 4KM4A 4NWJA 4UORA 5LRNA 5EGEA 2ANHA 5DLTA 2W8SA 3KD8A 2W5RA 1E1ZP 1HQAA 2QZUA 3LXQA 5INHA 4KJGA 3T00A 1EJJA 4UPKA 1ELXA 4CXKA 1ELZA 1ALIA 4LQYA 3IGYB 4QAXA 1KHKA 3BDGA 4LR2A 5K4PA 4CYSA 4UOOA 1ED9A 3SZZA 1ELYA 2XR9A 1SHNA 4ZG6A 3BDHA 3UN2A 1N2KA 4KJDA 4GTZA 3UN5A 4GTXA 2ZKTA 4KAVA 3T01A 3UN3A 3A52A 4FDJA 2IUCA 4ZG7A 5KXAA 4LRFA 3M8YA 2GSNA 1ALJA 1O99A 5TJ3A 3IDDA 3MK1A 3TG0A 2XRGA 1ANJA 3CMRA 1EW2A 1ALKA 2RH6A 3B5QA 2X98A 1E2SP 4FDIA 1ALHA 1ZEBA 4LRAA 4ZG9A 3NVLA 3M8ZA 5EGHA 2GSOA 4B56A 1EQJA 5IJSA 4UPLA 4CXUA 4MY4A 3NKPA 4KAYA 1EI6A 3DPCA 2GA3A 3E2DA 2D1GA 1AJBA 3Q3QA 4MIVA 4LRDA 2W5WA 5HRTA 1Y6VA 2GLQA 4GTWA 3WBHA 3WAYA 1AJAA 3NKOA 1KH4A 5DLVA 3NKRA 1KH9A 1KH5A 5LIAA 4YR1A 1EW9A 3NKMA 1ED8A 3UNYA
chains in the Genus database with same CATH superfamily
3MK2A 1KHNA 4LRCA 3UO0A 1URBA 5AJ9A 1KH7A 1KHLA 1B8JA 1E3CP 3IGZB 1KHJA 2W5XA 1AUKA 3NKQA 4LRBA 4TN0A 3TWZA 5L0EA 3MK0A 4ZGAA 3WAVA 3TX0A 3WAXA 2G9YA 5GOVA 3SZYA 4UPIA 5LQQA 1N2LA 1SHQA 3WAWA 1P49A 4UOPA 2W8DA 3T02A 3NKNA 3DYCA 4LR9A 5L0KA 3M7VA 5C66A 1AJCA 3BDFA 3BDGB 5DLWA 1ANIA 2GSUA 1Y7AA 2W5QA 3ED4A 2W5TA 1K7HA 2VQRA 4CXSA 1E33P 3M8WA 1ZEDA 4GTYA 2W5SA 5LRMA 5L0BA 4LREA 1ZEFA 2IUCB 2W5VA 2IFYA 1HDHA 4LR7A 4UPHA 3OT9A 1EW8A 1URAA 5GRRA 4LR8A 1O98A 4N7TA 4MHXA 4NWXA 5IJQA 1FSUA 4CYRA 1AJDA 1HJKA 4KM4A 4NWJA 4UORA 5LRNA 5EGEA 2ANHA 5DLTA 2W8SA 3KD8A 2W5RA 1E1ZP 1HQAA 2QZUA 3LXQA 5INHA 4KJGA 3T00A 1EJJA 4UPKA 1ELXA 4CXKA 1ELZA 1ALIA 4LQYA 3IGYB 4QAXA 1KHKA 3BDGA 4LR2A 5K4PA 4CYSA 4UOOA 1ED9A 3SZZA 1ELYA 2XR9A 1SHNA 4ZG6A 3BDHA 3UN2A 1N2KA 4KJDA 4GTZA 3UN5A 4GTXA 2ZKTA 4KAVA 3T01A 3UN3A 3A52A 4FDJA 2IUCA 4ZG7A 5KXAA 4LRFA 3M8YA 2GSNA 1ALJA 1O99A 5TJ3A 3IDDA 3MK1A 3TG0A 2XRGA 1ANJA 3CMRA 1EW2A 1ALKA 2RH6A 3B5QA 2X98A 1E2SP 4FDIA 1ALHA 1ZEBA 4LRAA 4ZG9A 3NVLA 3M8ZA 5EGHA 2GSOA 4B56A 1EQJA 5IJSA 4UPLA 4CXUA 4MY4A 3NKPA 4KAYA 1EI6A 3DPCA 2GA3A 3E2DA 2D1GA 1AJBA 3Q3QA 4MIVA 4LRDA 2W5WA 5HRTA 1Y6VA 2GLQA 4GTWA 3WBHA 3WAYA 1AJAA 3NKOA 1KH4A 5DLVA 3NKRA 1KH9A 1KH5A 5LIAA 4YR1A 1EW9A 3NKMA 1ED8A 3UNYA
chains in the Genus database with same CATH topology
3MK2A 1KHNA 4LRCA 3UO0A 1URBA 5AJ9A 1KH7A 1KHLA 1B8JA 1E3CP 3IGZB 1KHJA 2W5XA 1AUKA 3NKQA 4LRBA 4TN0A 3TWZA 5L0EA 3MK0A 4ZGAA 3WAVA 3TX0A 3WAXA 2G9YA 5GOVA 3SZYA 4UPIA 5LQQA 1N2LA 1SHQA 3WAWA 1P49A 4UOPA 2W8DA 3T02A 3NKNA 3DYCA 4LR9A 5L0KA 3M7VA 5C66A 1AJCA 3BDFA 3BDGB 5DLWA 1ANIA 2GSUA 1Y7AA 2W5QA 3ED4A 2W5TA 1K7HA 2VQRA 4CXSA 1E33P 3M8WA 1ZEDA 4GTYA 2W5SA 5LRMA 5L0BA 4LREA 1ZEFA 2IUCB 2W5VA 2IFYA 1HDHA 4LR7A 4UPHA 3OT9A 1EW8A 1URAA 5GRRA 4LR8A 1O98A 4N7TA 4MHXA 4NWXA 5IJQA 1FSUA 4CYRA 1AJDA 1HJKA 4KM4A 4NWJA 4UORA 5LRNA 5EGEA 2ANHA 5DLTA 2W8SA 3KD8A 2W5RA 1E1ZP 1HQAA 2QZUA 3LXQA 5INHA 4KJGA 3T00A 1EJJA 4UPKA 1ELXA 4CXKA 1ELZA 1ALIA 4LQYA 3IGYB 4QAXA 1KHKA 3BDGA 4LR2A 5K4PA 4CYSA 4UOOA 1ED9A 3SZZA 1ELYA 2XR9A 1SHNA 4ZG6A 3BDHA 3UN2A 1N2KA 4KJDA 4GTZA 3UN5A 4GTXA 2ZKTA 4KAVA 3T01A 3UN3A 3A52A 4FDJA 2IUCA 4ZG7A 5KXAA 4LRFA 3M8YA 2GSNA 1ALJA 1O99A 5TJ3A 3IDDA 3MK1A 3TG0A 2XRGA 1ANJA 3CMRA 1EW2A 1ALKA 2RH6A 3B5QA 2X98A 1E2SP 4FDIA 1ALHA 1ZEBA 4LRAA 4ZG9A 3NVLA 3M8ZA 5EGHA 2GSOA 4B56A 1EQJA 5IJSA 4UPLA 4CXUA 4MY4A 3NKPA 4KAYA 1EI6A 3DPCA 2GA3A 3E2DA 2D1GA 1AJBA 3Q3QA 4MIVA 4LRDA 2W5WA 5HRTA 1Y6VA 2GLQA 4GTWA 3WBHA 3WAYA 1AJAA 3NKOA 1KH4A 5DLVA 3NKRA 1KH9A 1KH5A 5LIAA 4YR1A 1EW9A 3NKMA 1ED8A 3UNYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MK2 A;  1KHN A;  4LRC A;  3UO0 A;  1URB A;  5AJ9 A;  1KH7 A;  1KHL A;  1B8J A;  1E3C P;  3IGZ B;  1KHJ A;  2W5X A;  1AUK A;  3NKQ A;  4LRB A;  4TN0 A;  3TWZ A;  5L0E A;  3MK0 A;  4ZGA A;  3WAV A;  3TX0 A;  3WAX A;  2G9Y A;  5GOV A;  3SZY A;  4UPI A;  5LQQ A;  1N2L A;  1SHQ A;  3WAW A;  1P49 A;  4UOP A;  2W8D A;  3T02 A;  3NKN A;  3DYC A;  4LR9 A;  5L0K A;  3M7V A;  5C66 A;  1AJC A;  3BDF A;  3BDG B;  5DLW A;  1ANI A;  2GSU A;  1Y7A A;  2W5Q A;  3ED4 A;  2W5T A;  1K7H A;  2VQR A;  4CXS A;  1E33 P;  3M8W A;  1ZED A;  4GTY A;  2W5S A;  5LRM A;  5L0B A;  4LRE A;  1ZEF A;  2IUC B;  2W5V A;  2IFY A;  1HDH A;  4LR7 A;  4UPH A;  3OT9 A;  1EW8 A;  1URA A;  5GRR A;  4LR8 A;  1O98 A;  4N7T A;  4MHX A;  4NWX A;  5IJQ A;  1FSU A;  4CYR A;  1AJD A;  1HJK A;  4KM4 A;  4NWJ A;  4UOR A;  5LRN A;  5EGE A;  2ANH A;  5DLT A;  2W8S A;  3KD8 A;  2W5R A;  1E1Z P;  1HQA A;  2QZU A;  3LXQ A;  5INH A;  4KJG A;  3T00 A;  1EJJ A;  4UPK A;  1ELX A;  4CXK A;  1ELZ A;  1ALI A;  4LQY A;  3IGY B;  4QAX A;  1KHK A;  3BDG A;  4LR2 A;  5K4P A;  4CYS A;  4UOO A;  1ED9 A;  3SZZ A;  1ELY A;  2XR9 A;  1SHN A;  4ZG6 A;  3BDH A;  3UN2 A;  1N2K A;  4KJD A;  4GTZ A;  3UN5 A;  4GTX A;  2ZKT A;  4KAV A;  3T01 A;  3UN3 A;  3A52 A;  4FDJ A;  2IUC A;  4ZG7 A;  5KXA A;  4LRF A;  3M8Y A;  2GSN A;  1ALJ A;  1O99 A;  5TJ3 A;  3IDD A;  3MK1 A;  3TG0 A;  2XRG A;  1ANJ A;  3CMR A;  1EW2 A;  1ALK A;  2RH6 A;  3B5Q A;  2X98 A;  1E2S P;  4FDI A;  1ALH A;  1ZEB A;  4LRA A;  4ZG9 A;  3NVL A;  3M8Z A;  5EGH A;  2GSO A;  4B56 A;  1EQJ A;  5IJS A;  4UPL A;  4CXU A;  4MY4 A;  3NKP A;  4KAY A;  1EI6 A;  3DPC A;  2GA3 A;  3E2D A;  2D1G A;  1AJB A;  3Q3Q A;  4MIV A;  4LRD A;  2W5W A;  5HRT A;  1Y6V A;  2GLQ A;  4GTW A;  3WBH A;  3WAY A;  1AJA A;  3NKO A;  1KH4 A;  5DLV A;  3NKR A;  1KH9 A;  1KH5 A;  5LIA A;  4YR1 A;  1EW9 A;  3NKM A;  1ED8 A;  3UNY A; 
#chains in the Genus database with same CATH topology
 3MK2 A;  1KHN A;  4LRC A;  3UO0 A;  1URB A;  5AJ9 A;  1KH7 A;  1KHL A;  1B8J A;  1E3C P;  3IGZ B;  1KHJ A;  2W5X A;  1AUK A;  3NKQ A;  4LRB A;  4TN0 A;  3TWZ A;  5L0E A;  3MK0 A;  4ZGA A;  3WAV A;  3TX0 A;  3WAX A;  2G9Y A;  5GOV A;  3SZY A;  4UPI A;  5LQQ A;  1N2L A;  1SHQ A;  3WAW A;  1P49 A;  4UOP A;  2W8D A;  3T02 A;  3NKN A;  3DYC A;  4LR9 A;  5L0K A;  3M7V A;  5C66 A;  1AJC A;  3BDF A;  3BDG B;  5DLW A;  1ANI A;  2GSU A;  1Y7A A;  2W5Q A;  3ED4 A;  2W5T A;  1K7H A;  2VQR A;  4CXS A;  1E33 P;  3M8W A;  1ZED A;  4GTY A;  2W5S A;  5LRM A;  5L0B A;  4LRE A;  1ZEF A;  2IUC B;  2W5V A;  2IFY A;  1HDH A;  4LR7 A;  4UPH A;  3OT9 A;  1EW8 A;  1URA A;  5GRR A;  4LR8 A;  1O98 A;  4N7T A;  4MHX A;  4NWX A;  5IJQ A;  1FSU A;  4CYR A;  1AJD A;  1HJK A;  4KM4 A;  4NWJ A;  4UOR A;  5LRN A;  5EGE A;  2ANH A;  5DLT A;  2W8S A;  3KD8 A;  2W5R A;  1E1Z P;  1HQA A;  2QZU A;  3LXQ A;  5INH A;  4KJG A;  3T00 A;  1EJJ A;  4UPK A;  1ELX A;  4CXK A;  1ELZ A;  1ALI A;  4LQY A;  3IGY B;  4QAX A;  1KHK A;  3BDG A;  4LR2 A;  5K4P A;  4CYS A;  4UOO A;  1ED9 A;  3SZZ A;  1ELY A;  2XR9 A;  1SHN A;  4ZG6 A;  3BDH A;  3UN2 A;  1N2K A;  4KJD A;  4GTZ A;  3UN5 A;  4GTX A;  2ZKT A;  4KAV A;  3T01 A;  3UN3 A;  3A52 A;  4FDJ A;  2IUC A;  4ZG7 A;  5KXA A;  4LRF A;  3M8Y A;  2GSN A;  1ALJ A;  1O99 A;  5TJ3 A;  3IDD A;  3MK1 A;  3TG0 A;  2XRG A;  1ANJ A;  3CMR A;  1EW2 A;  1ALK A;  2RH6 A;  3B5Q A;  2X98 A;  1E2S P;  4FDI A;  1ALH A;  1ZEB A;  4LRA A;  4ZG9 A;  3NVL A;  3M8Z A;  5EGH A;  2GSO A;  4B56 A;  1EQJ A;  5IJS A;  4UPL A;  4CXU A;  4MY4 A;  3NKP A;  4KAY A;  1EI6 A;  3DPC A;  2GA3 A;  3E2D A;  2D1G A;  1AJB A;  3Q3Q A;  4MIV A;  4LRD A;  2W5W A;  5HRT A;  1Y6V A;  2GLQ A;  4GTW A;  3WBH A;  3WAY A;  1AJA A;  3NKO A;  1KH4 A;  5DLV A;  3NKR A;  1KH9 A;  1KH5 A;  5LIA A;  4YR1 A;  1EW9 A;  3NKM A;  1ED8 A;  3UNY A; 
#chains in the Genus database with same CATH homology
 3MK2 A;  1KHN A;  4LRC A;  3UO0 A;  1URB A;  5AJ9 A;  1KH7 A;  1KHL A;  1B8J A;  1E3C P;  3IGZ B;  1KHJ A;  2W5X A;  1AUK A;  3NKQ A;  4LRB A;  4TN0 A;  3TWZ A;  5L0E A;  3MK0 A;  4ZGA A;  3WAV A;  3TX0 A;  3WAX A;  2G9Y A;  5GOV A;  3SZY A;  4UPI A;  5LQQ A;  1N2L A;  1SHQ A;  3WAW A;  1P49 A;  4UOP A;  2W8D A;  3T02 A;  3NKN A;  3DYC A;  4LR9 A;  5L0K A;  3M7V A;  5C66 A;  1AJC A;  3BDF A;  3BDG B;  5DLW A;  1ANI A;  2GSU A;  1Y7A A;  2W5Q A;  3ED4 A;  2W5T A;  1K7H A;  2VQR A;  4CXS A;  1E33 P;  3M8W A;  1ZED A;  4GTY A;  2W5S A;  5LRM A;  5L0B A;  4LRE A;  1ZEF A;  2IUC B;  2W5V A;  2IFY A;  1HDH A;  4LR7 A;  4UPH A;  3OT9 A;  1EW8 A;  1URA A;  5GRR A;  4LR8 A;  1O98 A;  4N7T A;  4MHX A;  4NWX A;  5IJQ A;  1FSU A;  4CYR A;  1AJD A;  1HJK A;  4KM4 A;  4NWJ A;  4UOR A;  5LRN A;  5EGE A;  2ANH A;  5DLT A;  2W8S A;  3KD8 A;  2W5R A;  1E1Z P;  1HQA A;  2QZU A;  3LXQ A;  5INH A;  4KJG A;  3T00 A;  1EJJ A;  4UPK A;  1ELX A;  4CXK A;  1ELZ A;  1ALI A;  4LQY A;  3IGY B;  4QAX A;  1KHK A;  3BDG A;  4LR2 A;  5K4P A;  4CYS A;  4UOO A;  1ED9 A;  3SZZ A;  1ELY A;  2XR9 A;  1SHN A;  4ZG6 A;  3BDH A;  3UN2 A;  1N2K A;  4KJD A;  4GTZ A;  3UN5 A;  4GTX A;  2ZKT A;  4KAV A;  3T01 A;  3UN3 A;  3A52 A;  4FDJ A;  2IUC A;  4ZG7 A;  5KXA A;  4LRF A;  3M8Y A;  2GSN A;  1ALJ A;  1O99 A;  5TJ3 A;  3IDD A;  3MK1 A;  3TG0 A;  2XRG A;  1ANJ A;  3CMR A;  1EW2 A;  1ALK A;  2RH6 A;  3B5Q A;  2X98 A;  1E2S P;  4FDI A;  1ALH A;  1ZEB A;  4LRA A;  4ZG9 A;  3NVL A;  3M8Z A;  5EGH A;  2GSO A;  4B56 A;  1EQJ A;  5IJS A;  4UPL A;  4CXU A;  4MY4 A;  3NKP A;  4KAY A;  1EI6 A;  3DPC A;  2GA3 A;  3E2D A;  2D1G A;  1AJB A;  3Q3Q A;  4MIV A;  4LRD A;  2W5W A;  5HRT A;  1Y6V A;  2GLQ A;  4GTW A;  3WBH A;  3WAY A;  1AJA A;  3NKO A;  1KH4 A;  5DLV A;  3NKR A;  1KH9 A;  1KH5 A;  5LIA A;  4YR1 A;  1EW9 A;  3NKM A;  1ED8 A;  3UNY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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