3O0AA

Crystal structure of the wild type cp1 hydrolitic domain from aquifex aeolicus leucyl-trna
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
211
structure length
211
Chain Sequence
EGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKIPVWSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Leucyl-tRNA synthetase subunit alpha
publication title Crystal Structure of the Wild Type and Two Mutants of the Cp1 Hydrolytic Domain from Aquifex Aeolicus Leucyl-tRNA Synthetase
rcsb
source organism Aquifex aeolicus
total genus 63
structure length 211
sequence length 211
chains with identical sequence B
ec nomenclature ec 6.1.1.4: Leucine--tRNA ligase.
pdb deposition date 2010-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.740.10 Alpha Beta Alpha-Beta Complex Isoleucyl-tRNA Synthetase; domain 2 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 3o0aA00
2WFEA 2AJHA 5AGIA 2BYTA 1WNYA 3PZ5A 5AGHA 2AJIA 1WKBA 1UE0A 3PZ0A 2WFDA 3O0AA 1H3NA 1WKAA 3PZ6A 5AGTA 1WZ2A 1OBCA 5AGSA 2AJGA 3ZGZA 1FFYA 4CQNA 5AGJA 1IVSA 4ARCA 4K47A 3ZJVA 4K48A 1WK8A 1ILEA 4AS1A 3ZJUA 1QU3A 2WFGA 2V0GA 1UDZA 1WNZA 5AGRA 1WK9A 2V0CA 1GAXA 1JZSA 4AQ7A 3ZJTA 1OBHA 4ARIA 1QU2A 1JZQA 2BTEA
chains in the Genus database with same CATH superfamily
2WFEA 2AJHA 5AGIA 2BYTA 1WNYA 3PZ5A 5AGHA 2AJIA 1WKBA 1UE0A 3PZ0A 2WFDA 3O0AA 1H3NA 1WKAA 3PZ6A 5AGTA 1WZ2A 1OBCA 5AGSA 2AJGA 3ZGZA 1FFYA 4CQNA 5AGJA 1IVSA 4ARCA 4K47A 3ZJVA 4K48A 1WK8A 1ILEA 4AS1A 3ZJUA 1QU3A 2WFGA 2V0GA 1UDZA 1WNZA 5AGRA 1WK9A 2V0CA 1GAXA 1JZSA 4AQ7A 3ZJTA 1OBHA 4ARIA 1QU2A 1JZQA 2BTEA
chains in the Genus database with same CATH topology
2WFEA 2AJHA 5AGIA 2BYTA 1WNYA 3PZ5A 5AGHA 2AJIA 1WKBA 1UE0A 3PZ0A 2WFDA 3O0AA 1H3NA 1WKAA 3PZ6A 5AGTA 1WZ2A 1OBCA 5AGSA 2AJGA 3ZGZA 1FFYA 4CQNA 5AGJA 1IVSA 4ARCA 4K47A 3ZJVA 4K48A 1WK8A 1ILEA 4AS1A 3ZJUA 1QU3A 2WFGA 2V0GA 1UDZA 1WNZA 5AGRA 1WK9A 2V0CA 1GAXA 1JZSA 4AQ7A 3ZJTA 1OBHA 4ARIA 1QU2A 1JZQA 2BTEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WFE A;  2AJH A;  5AGI A;  2BYT A;  1WNY A;  3PZ5 A;  5AGH A;  2AJI A;  1WKB A;  1UE0 A;  3PZ0 A;  2WFD A;  3O0A A;  1H3N A;  1WKA A;  3PZ6 A;  5AGT A;  1WZ2 A;  1OBC A;  5AGS A;  2AJG A;  3ZGZ A;  1FFY A;  4CQN A;  5AGJ A;  1IVS A;  4ARC A;  4K47 A;  3ZJV A;  4K48 A;  1WK8 A;  1ILE A;  4AS1 A;  3ZJU A;  1QU3 A;  2WFG A;  2V0G A;  1UDZ A;  1WNZ A;  5AGR A;  1WK9 A;  2V0C A;  1GAX A;  1JZS A;  4AQ7 A;  3ZJT A;  1OBH A;  4ARI A;  1QU2 A;  1JZQ A;  2BTE A; 
#chains in the Genus database with same CATH topology
 2WFE A;  2AJH A;  5AGI A;  2BYT A;  1WNY A;  3PZ5 A;  5AGH A;  2AJI A;  1WKB A;  1UE0 A;  3PZ0 A;  2WFD A;  3O0A A;  1H3N A;  1WKA A;  3PZ6 A;  5AGT A;  1WZ2 A;  1OBC A;  5AGS A;  2AJG A;  3ZGZ A;  1FFY A;  4CQN A;  5AGJ A;  1IVS A;  4ARC A;  4K47 A;  3ZJV A;  4K48 A;  1WK8 A;  1ILE A;  4AS1 A;  3ZJU A;  1QU3 A;  2WFG A;  2V0G A;  1UDZ A;  1WNZ A;  5AGR A;  1WK9 A;  2V0C A;  1GAX A;  1JZS A;  4AQ7 A;  3ZJT A;  1OBH A;  4ARI A;  1QU2 A;  1JZQ A;  2BTE A; 
#chains in the Genus database with same CATH homology
 2WFE A;  2AJH A;  5AGI A;  2BYT A;  1WNY A;  3PZ5 A;  5AGH A;  2AJI A;  1WKB A;  1UE0 A;  3PZ0 A;  2WFD A;  3O0A A;  1H3N A;  1WKA A;  3PZ6 A;  5AGT A;  1WZ2 A;  1OBC A;  5AGS A;  2AJG A;  3ZGZ A;  1FFY A;  4CQN A;  5AGJ A;  1IVS A;  4ARC A;  4K47 A;  3ZJV A;  4K48 A;  1WK8 A;  1ILE A;  4AS1 A;  3ZJU A;  1QU3 A;  2WFG A;  2V0G A;  1UDZ A;  1WNZ A;  5AGR A;  1WK9 A;  2V0C A;  1GAX A;  1JZS A;  4AQ7 A;  3ZJT A;  1OBH A;  4ARI A;  1QU2 A;  1JZQ A;  2BTE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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