3OSSD

The crystal structure of enterotoxigenic escherichia coli gspc-gspd complex from the type ii secretion system
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
175
structure length
157
Chain Sequence
ATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIEGDELVLKVVKSAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords TYPE 2 SECRETION SYSTEM, GSPC
publication title Structural and functional studies on the interaction of GspC and GspD in the type II secretion system.
pubmed doi rcsb
source organism Escherichia coli
total genus 45
structure length 157
sequence length 175
ec nomenclature
pdb deposition date 2010-09-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.120 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 Ribosomal Protein S8; Chain: A, domain 1 3ossD00
4G08A 3EZJA 3OSSD 4EC5A 2Y3MA 4E9JA 3GR5A
chains in the Genus database with same CATH superfamily
1I94H 2JVZA 1F0XA 4LF5H 4JI4H 4E9JA 2VQFH 1J5KA 4GKKH 1EC6A 4OCHA 2CTFA 1WTJA 4EC5A 4KHPH 3I0PA 2VQEH 2YQRA 1XMQH 1N33H 2UUCH 1S20A 4K0KH 4LFBH 2M6QA 4JVHA 4WALA 1X9ZA 1TUAA 4DV6H 4DR2H 1XNRH 1HNXH 5K36G 3SB1A 2PT7G 2UXBH 1K1GA 2ZQEA 4BA2I 3V69A 4JYAH 2OPUA 1VBIA 2G8YA 5A2QW 4JI0H 3T1HH 2JA9A 4OX9H 2BA0A 1MSZA 4X66H 4JI7H 2JEAI 2BL5A 3GABA 4LIJA 2HH3A 4B8TA 2CTEA 3FAUA 4QMFB 4DV0H 4JI3H 4DV4H 2PQUA 4NZTM 1DT4A 4AIMA 2CPMA 2ANRA 5JEAG 2FMRA 4DV3H 1XRHA 1AN7A 3J81W 4H8AA 2UUBH 2CTMA 2Z0SA 3AEVB 4WANA 1ZZKA 2AXYA 4FJSA 1SEIA 1DTJA 2UU9H 3OETA 4JI8H 1UG8A 1FJGH 2ZM6H 4DV1H 1NXUA 5LMNH 4JI6H 4DR5H 4YHHH 2P2RA 1Z2IA 2NN6G 1ODHA 2CPQA 1V9NA 2D9IA 2O4CA 3KDKA 4JI5H 4GKJH 1WVNA 1I6UA 2E5LH 5LL6b 2FFMA 1ZZIA 3NCVA 4NBQA 2LRRA 4YY3H 2HH2A 1N32H 2CWFA 4X65H 1V8CA 2PY9A 4DR3H 5LMUH 4X62H 1J4WA 2F4VH 2UUAH 2M8WA 5DT9A 2MJHA 2CTKA 3OSSD 1XMOH 5C0XG 3J80W 4LF9H 4FJUA 2CTLA 1ZTGA 2K1HA 3U1KA 5FLXW 1HNWH 4DR4H 3OTOH 4LF4H 1XNQH 4X64H 4DUZH 3VKEA 2HHHH 4DR7H 1X0AA 3RF2A 3GR5A 3JAMW 4DUYH 4LF7H 4DR6H 4LF8H 1N34H 3UOEA 2LTMA 4BA1I 4JV5H 4JI2H 2CTJA 3GKUA 1J5EH 2A1SA 4OD6A 2LTLA 4DV2H 4OO1G 2OPVA 2JEBI 2CWHA 2QNDA 4IFDG 1N36H 4PDBA 1HR0H 1S03G 4LFCH 2Y3MA 2ANNA 4AQYH 2UXCH 2FPHX 2VKCA 4LF6H 1WE8A 3EZJA 1VIGA 1IBLH 1FKAH 1IBMH 3KDGA 4AM3A 1X4NA 4B3MH 3L7ZC 1X4MA 1PQXA 1ZZJA 4NZRM 4DR1H 2UXDH 4G08A 1VIHA 3J7AK 2DGRA 2X06A 1HNZH 4JVYA 1IBKH 4B3SH 4B8CD 2LF0A 4JI1H 4DV5H 2JE6I 4NXNH 2JZXA 1WHRA 5IT9W 4NXMH 2E3UA 3QD7X 3T1YH 4B3TH 4LFAH 5BR8H 1KHMA 4DV7H 4B3RH 5IWAH
chains in the Genus database with same CATH topology
1I94H 1F0XA 4LF5H 4JI4H 5IWAH 4E9JA 2VQFH 4GKKH 4OCHA 4EC5A 4KHPH 2VQEH 1XMQH 1N33H 2UUCH 4K0KH 4LFBH 1X9ZA 4DV6H 4DR2H 1XNRH 1HNXH 3SB1A 2PT7G 2ZQEA 4JYAH 5A2QW 4JI0H 3T1HH 4OX9H 4X66H 4JI7H 3GABA 3FAUA 4DV0H 4JI3H 4DV4H 4NZTM 2UXBH 4DV3H 1AN7A 3J81W 2UUBH 1SEIA 2UU9H 3OETA 4JI8H 1FJGH 2ZM6H 4DV1H 4JI6H 5LMNH 4DR5H 4YHHH 1ODHA 2D9IA 2O4CA 3KDKA 4JI5H 4GKJH 1I6UA 2E5LH 5LL6b 3NCVA 4YY3H 1N32H 4X65H 4DR3H 5LMUH 4X62H 2F4VH 2UUAH 5DT9A 3OSSD 1XMOH 3J80W 4LF9H 5FLXW 4DR4H 1HNWH 3OTOH 4LF4H 1XNQH 4X64H 4DUZH 2HHHH 4DR7H 3RF2A 3GR5A 3JAMW 4DUYH 4LF7H 4DR6H 4LF8H 1N34H 4JV5H 4JI2H 1J5EH 4DV2H 4OD6A 1N36H 4PDBA 1HR0H 1S03G 4LFCH 2Y3MA 4AQYH 2UXCH 2FPHX 2VKCA 4LF6H 3EZJA 1IBLH 1FKAH 1IBMH 3KDGA 4B3MH 4NZRM 2UXDH 4G08A 3J7AK 1HNZH 1IBKH 4B3SH 4B8CD 2LF0A 4JI1H 4DV5H 4NXNH 5IT9W 4NXMH 3QD7X 3T1YH 4B3TH 4LFAH 5BR8H 4DV7H 4B3RH 4DR1H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G08 A;  3EZJ A;  3OSS D;  4EC5 A;  2Y3M A;  4E9J A;  3GR5 A; 
#chains in the Genus database with same CATH topology
 1I94 H;  2JVZ A;  1F0X A;  4LF5 H;  4JI4 H;  4E9J A;  2VQF H;  1J5K A;  4GKK H;  1EC6 A;  4OCH A;  2CTF A;  1WTJ A;  4EC5 A;  4KHP H;  3I0P A;  2VQE H;  2YQR A;  1XMQ H;  1N33 H;  2UUC H;  1S20 A;  4K0K H;  4LFB H;  2M6Q A;  4JVH A;  4WAL A;  1X9Z A;  1TUA A;  4DV6 H;  4DR2 H;  1XNR H;  1HNX H;  5K36 G;  3SB1 A;  2PT7 G;  2UXB H;  1K1G A;  2ZQE A;  4BA2 I;  3V69 A;  4JYA H;  2OPU A;  1VBI A;  2G8Y A;  5A2Q W;  4JI0 H;  3T1H H;  2JA9 A;  4OX9 H;  2BA0 A;  1MSZ A;  4X66 H;  4JI7 H;  2JEA I;  2BL5 A;  3GAB A;  4LIJ A;  2HH3 A;  4B8T A;  2CTE A;  3FAU A;  4QMF B;  4DV0 H;  4JI3 H;  4DV4 H;  2PQU A;  4NZT M;  1DT4 A;  4AIM A;  2CPM A;  2ANR A;  5JEA G;  2FMR A;  4DV3 H;  1XRH A;  1AN7 A;  3J81 W;  4H8A A;  2UUB H;  2CTM A;  2Z0S A;  3AEV B;  4WAN A;  1ZZK A;  2AXY A;  4FJS A;  1SEI A;  1DTJ A;  2UU9 H;  3OET A;  4JI8 H;  1UG8 A;  1FJG H;  2ZM6 H;  4DV1 H;  1NXU A;  5LMN H;  4JI6 H;  4DR5 H;  4YHH H;  2P2R A;  1Z2I A;  2NN6 G;  1ODH A;  2CPQ A;  1V9N A;  2D9I A;  2O4C A;  3KDK A;  4JI5 H;  4GKJ H;  1WVN A;  1I6U A;  2E5L H;  5LL6 b;  2FFM A;  1ZZI A;  3NCV A;  4NBQ A;  2LRR A;  4YY3 H;  2HH2 A;  1N32 H;  2CWF A;  4X65 H;  1V8C A;  2PY9 A;  4DR3 H;  5LMU H;  4X62 H;  1J4W A;  2F4V H;  2UUA H;  2M8W A;  5DT9 A;  2MJH A;  2CTK A;  3OSS D;  1XMO H;  5C0X G;  3J80 W;  4LF9 H;  4FJU A;  2CTL A;  1ZTG A;  2K1H A;  3U1K A;  5FLX W;  1HNW H;  4DR4 H;  3OTO H;  4LF4 H;  1XNQ H;  4X64 H;  4DUZ H;  3VKE A;  2HHH H;  4DR7 H;  1X0A A;  3RF2 A;  3GR5 A;  3JAM W;  4DUY H;  4LF7 H;  4DR6 H;  4LF8 H;  1N34 H;  3UOE A;  2LTM A;  4BA1 I;  4JV5 H;  4JI2 H;  2CTJ A;  3GKU A;  1J5E H;  2A1S A;  4OD6 A;  2LTL A;  4DV2 H;  4OO1 G;  2OPV A;  2JEB I;  2CWH A;  2QND A;  4IFD G;  1N36 H;  4PDB A;  1HR0 H;  1S03 G;  4LFC H;  2Y3M A;  2ANN A;  4AQY H;  2UXC H;  2FPH X;  2VKC A;  4LF6 H;  1WE8 A;  3EZJ A;  1VIG A;  1IBL H;  1FKA H;  1IBM H;  3KDG A;  4AM3 A;  1X4N A;  4B3M H;  3L7Z C;  1X4M A;  1PQX A;  1ZZJ A;  4NZR M;  4DR1 H;  2UXD H;  4G08 A;  1VIH A;  3J7A K;  2DGR A;  2X06 A;  1HNZ H;  4JVY A;  1IBK H;  4B3S H;  4B8C D;  2LF0 A;  4JI1 H;  4DV5 H;  2JE6 I;  4NXN H;  2JZX A;  1WHR A;  5IT9 W;  4NXM H;  2E3U A;  3QD7 X;  3T1Y H;  4B3T H;  4LFA H;  5BR8 H;  1KHM A;  4DV7 H;  4B3R H;  5IWA H; 
#chains in the Genus database with same CATH homology
 1I94 H;  1F0X A;  4LF5 H;  4JI4 H;  5IWA H;  4E9J A;  2VQF H;  4GKK H;  4OCH A;  4EC5 A;  4KHP H;  2VQE H;  1XMQ H;  1N33 H;  2UUC H;  4K0K H;  4LFB H;  1X9Z A;  4DV6 H;  4DR2 H;  1XNR H;  1HNX H;  3SB1 A;  2PT7 G;  2ZQE A;  4JYA H;  5A2Q W;  4JI0 H;  3T1H H;  4OX9 H;  4X66 H;  4JI7 H;  3GAB A;  3FAU A;  4DV0 H;  4JI3 H;  4DV4 H;  4NZT M;  2UXB H;  4DV3 H;  1AN7 A;  3J81 W;  2UUB H;  1SEI A;  2UU9 H;  3OET A;  4JI8 H;  1FJG H;  2ZM6 H;  4DV1 H;  4JI6 H;  5LMN H;  4DR5 H;  4YHH H;  1ODH A;  2D9I A;  2O4C A;  3KDK A;  4JI5 H;  4GKJ H;  1I6U A;  2E5L H;  5LL6 b;  3NCV A;  4YY3 H;  1N32 H;  4X65 H;  4DR3 H;  5LMU H;  4X62 H;  2F4V H;  2UUA H;  5DT9 A;  3OSS D;  1XMO H;  3J80 W;  4LF9 H;  5FLX W;  4DR4 H;  1HNW H;  3OTO H;  4LF4 H;  1XNQ H;  4X64 H;  4DUZ H;  2HHH H;  4DR7 H;  3RF2 A;  3GR5 A;  3JAM W;  4DUY H;  4LF7 H;  4DR6 H;  4LF8 H;  1N34 H;  4JV5 H;  4JI2 H;  1J5E H;  4DV2 H;  4OD6 A;  1N36 H;  4PDB A;  1HR0 H;  1S03 G;  4LFC H;  2Y3M A;  4AQY H;  2UXC H;  2FPH X;  2VKC A;  4LF6 H;  3EZJ A;  1IBL H;  1FKA H;  1IBM H;  3KDG A;  4B3M H;  4NZR M;  2UXD H;  4G08 A;  3J7A K;  1HNZ H;  1IBK H;  4B3S H;  4B8C D;  2LF0 A;  4JI1 H;  4DV5 H;  4NXN H;  5IT9 W;  4NXM H;  3QD7 X;  3T1Y H;  4B3T H;  4LFA H;  5BR8 H;  4DV7 H;  4B3R H;  4DR1 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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