3OT2A

Crystal structure of a putative nuclease belonging to duf820 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
179
structure length
179
Chain Sequence
PITLDEFLKLPETEPASEYIEGKIIQKPMPQGKHSAIQSECVSVINSVVKPQRIARAFLELRCTFGDHSTVPDISVFIWSRIPREENGEIANIFLIAPDWTIEILSPDQSQTKVTKNILHCLKHGTQMGWLIDPDEQTVFVYRPQQETEVFDEPDALVPVPSFASELHLSIKDLFSWLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein
publication title Crystal structure of a putative nuclease belonging to DUF820 (Ava_3926) from Anabaena variabilis ATCC 29413 at 1.96 A resolution
rcsb
source organism Anabaena variabilis
total genus 50
structure length 179
sequence length 179
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05685 Uma2 Putative restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1570.10 Alpha Beta Alpha-Beta Complex tt1808, chain A tt1808, chain A 3ot2A00
1WDJA 3OT2A
chains in the Genus database with same CATH superfamily
1WDJA 3H1TA 4BECA 3OT2A 3ZEFB 3S1SA 2W00A 4XJXA 3IJMA 4BE7B 4I43B 4BEBA
chains in the Genus database with same CATH topology
1WDJA 3H1TA 4BECA 3OT2A 3ZEFB 3S1SA 2W00A 4XJXA 3IJMA 4BE7B 4I43B 4BEBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WDJ A;  3OT2 A; 
#chains in the Genus database with same CATH topology
 1WDJ A;  3H1T A;  4BEC A;  3OT2 A;  3ZEF B;  3S1S A;  2W00 A;  4XJX A;  3IJM A;  4BE7 B;  4I43 B;  4BEB A; 
#chains in the Genus database with same CATH homology
 1WDJ A;  3H1T A;  4BEC A;  3OT2 A;  3ZEF B;  3S1S A;  2W00 A;  4XJX A;  3IJM A;  4BE7 B;  4I43 B;  4BEB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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